Wall clock time and date at job start Mon Mar 30 2020 02:30:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.40086 * 126.11145 * 2 1 4 4 C 1.30894 * 108.42813 * 180.15800 * 3 2 1 5 5 C 1.39603 * 108.49134 * 359.61708 * 4 3 2 6 6 C 1.35955 * 126.11520 * 179.73478 * 2 1 3 7 7 N 1.39209 * 126.28109 * 359.96528 * 6 2 1 8 8 C 1.36286 * 125.42909 * 353.82251 * 7 6 2 9 9 C 1.34630 * 108.44948 * 180.02562 * 8 7 6 10 10 C 1.46409 * 107.15693 * 359.97438 * 9 8 7 11 11 C 1.41213 * 126.48784 * 180.02562 * 10 9 8 12 12 H 1.08000 * 120.00064 * 359.97438 * 11 10 9 13 13 C 1.39855 * 119.99591 * 180.02562 * 11 10 9 14 14 N 1.30890 * 120.00550 * 359.97438 * 13 11 10 15 15 Si 1.86805 * 119.99685 * 179.97438 * 13 11 10 16 16 H 1.48502 * 109.46817 * 59.99992 * 15 13 11 17 17 H 1.48494 * 109.46992 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.47091 * 300.00071 * 15 13 11 19 19 N 1.33040 * 107.02113 * 359.72589 * 10 9 8 20 20 H 1.09000 * 109.47017 * 263.53853 * 1 2 3 21 21 H 1.09004 * 109.47434 * 23.53637 * 1 2 3 22 22 H 1.08997 * 109.47222 * 143.53659 * 1 2 3 23 23 H 1.08000 * 125.75268 * 179.88623 * 4 3 2 24 24 H 1.08002 * 126.06316 * 180.27381 * 5 4 3 25 25 H 1.07999 * 125.77734 * 359.97438 * 8 7 6 26 26 H 1.08002 * 126.42762 * 180.02562 * 9 8 7 27 27 H 0.96994 * 120.00544 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2906 1.1317 0.0000 4 6 3.5377 0.7341 -0.0034 5 6 3.5574 -0.6618 0.0031 6 6 2.2663 -1.0983 0.0051 7 7 1.8453 -2.4252 0.0119 8 6 0.5541 -2.8437 0.1341 9 6 0.5373 -4.1894 0.0991 10 6 1.9232 -4.6347 -0.0571 11 6 2.3714 -5.9712 -0.1408 12 1 1.6612 -6.7832 -0.0891 13 6 3.7352 -6.2433 -0.2894 14 7 4.5960 -5.2593 -0.3514 15 14 4.3282 -8.0113 -0.3993 16 1 3.7007 -8.6719 -1.5719 17 1 5.8050 -8.0293 -0.5532 18 1 3.9502 -8.7381 0.8393 19 7 2.6796 -3.5417 -0.1120 20 1 -0.3633 -0.1156 1.0211 21 1 -0.3634 0.9422 -0.4104 22 1 -0.3633 -0.8265 -0.6107 23 1 4.4051 1.3775 -0.0061 24 1 4.4393 -1.2851 0.0065 25 1 -0.3095 -2.2041 0.2418 26 1 -0.3351 -4.8220 0.1717 27 1 5.5418 -5.4480 -0.4549 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074279364.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:08 Heat of formation + Delta-G solvation = 160.852658 kcal Electronic energy + Delta-G solvation = -14017.818481 eV Core-core repulsion = 11586.648601 eV Total energy + Delta-G solvation = -2431.169879 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.086 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.76361 -38.86808 -33.81628 -32.90954 -31.47571 -28.87136 -27.85791 -26.50651 -25.72062 -21.29661 -20.88553 -19.45036 -19.14598 -17.00820 -16.42823 -15.32366 -14.94137 -14.63809 -13.80946 -13.30328 -13.17390 -13.07470 -12.61197 -12.32053 -11.98596 -11.71891 -11.22344 -10.97219 -10.67782 -10.18995 -10.10587 -9.76754 -9.01127 -8.66675 -8.34855 -7.81943 -7.04343 -6.53805 -4.49951 2.04356 2.64303 3.06240 3.11723 3.14475 3.16450 3.80935 3.83930 4.03866 4.16840 4.79748 5.24142 5.38528 5.45136 5.46272 5.62586 5.80031 6.18678 6.45530 6.67016 6.81667 6.84646 7.16161 7.23349 7.28377 7.50988 8.08133 8.29563 8.47106 8.71833 8.95906 9.65855 10.42267 Molecular weight = 218.09amu Principal moments of inertia in cm(-1) A = 0.048993 B = 0.008008 C = 0.006915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 571.368211 B = 3495.747027 C = 4048.362818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.403 5.403 3 N -0.316 5.316 4 C 0.063 3.937 5 C -0.290 4.290 6 C 0.368 3.632 7 N -0.356 5.356 8 C -0.007 4.007 9 C -0.260 4.260 10 C 0.207 3.793 11 C -0.432 4.432 12 H 0.086 0.914 13 C 0.069 3.931 14 N -0.760 5.760 15 Si 0.914 3.086 16 H -0.266 1.266 17 H -0.279 1.279 18 H -0.266 1.266 19 N -0.307 5.307 20 H 0.069 0.931 21 H 0.089 0.911 22 H 0.085 0.915 23 H 0.181 0.819 24 H 0.154 0.846 25 H 0.150 0.850 26 H 0.133 0.867 27 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.636 4.875 0.441 6.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.193 5.193 3 N -0.138 5.138 4 C -0.122 4.122 5 C -0.322 4.322 6 C 0.147 3.853 7 N -0.134 5.134 8 C -0.141 4.141 9 C -0.291 4.291 10 C 0.053 3.947 11 C -0.472 4.472 12 H 0.104 0.896 13 C -0.153 4.153 14 N -0.386 5.386 15 Si 0.739 3.261 16 H -0.191 1.191 17 H -0.204 1.204 18 H -0.191 1.191 19 N -0.133 5.133 20 H 0.087 0.913 21 H 0.107 0.893 22 H 0.103 0.897 23 H 0.198 0.802 24 H 0.172 0.828 25 H 0.167 0.833 26 H 0.151 0.849 27 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -4.251 6.520 0.317 7.790 hybrid contribution -0.196 -1.800 0.050 1.811 sum -4.447 4.720 0.367 6.496 Atomic orbital electron populations 1.22003 0.75436 1.04322 1.02679 1.48487 1.05830 1.02440 1.62498 1.77312 1.01673 1.05660 1.29172 1.23525 0.95007 0.94771 0.98902 1.20819 0.95440 0.94275 1.21681 1.17584 0.90390 0.78889 0.98476 1.45732 1.05080 1.02428 1.60133 1.22463 0.88375 0.96399 1.06863 1.22770 0.98332 0.92995 1.15005 1.20880 0.87885 0.93750 0.92233 1.18615 0.92592 0.89457 1.46523 0.89572 1.25888 0.96809 0.98988 0.93574 1.69915 1.03158 1.32634 1.32936 0.86277 0.77891 0.82319 0.79619 1.19125 1.20449 1.19112 1.79275 1.08548 0.88110 1.37401 0.91273 0.89259 0.89684 0.80179 0.82789 0.83272 0.84928 0.91235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.35 9.90 59.85 0.59 1.94 15 2 N -0.40 -7.65 4.04 -67.03 -0.27 -7.92 15 3 N -0.32 -5.92 12.57 30.58 0.38 -5.53 15 4 C 0.06 1.12 12.00 -17.44 -0.21 0.91 15 5 C -0.29 -6.18 10.63 -39.77 -0.42 -6.60 15 6 C 0.37 8.19 7.74 -152.73 -1.18 7.01 15 7 N -0.36 -8.69 3.78 -12.13 -0.05 -8.73 15 8 C -0.01 -0.15 10.18 -16.85 -0.17 -0.32 15 9 C -0.26 -5.95 11.02 -37.57 -0.41 -6.37 15 10 C 0.21 5.66 6.92 -82.93 -0.57 5.09 15 11 C -0.43 -11.54 9.42 -37.85 -0.36 -11.89 15 12 H 0.09 2.11 7.84 -52.49 -0.41 1.70 15 13 C 0.07 1.79 5.49 -17.35 -0.10 1.69 15 14 N -0.76 -20.88 11.96 55.54 0.66 -20.21 15 15 Si 0.91 18.93 29.56 -169.99 -5.02 13.91 15 16 H -0.27 -5.40 7.11 56.52 0.40 -5.00 15 17 H -0.28 -5.70 7.11 56.52 0.40 -5.29 15 18 H -0.27 -5.40 7.11 56.52 0.40 -5.00 15 19 N -0.31 -8.64 10.63 33.26 0.35 -8.29 15 20 H 0.07 0.84 8.13 -51.93 -0.42 0.42 15 21 H 0.09 1.03 8.14 -51.93 -0.42 0.61 15 22 H 0.08 1.12 5.76 -51.93 -0.30 0.82 15 23 H 0.18 2.40 8.06 -52.49 -0.42 1.98 15 24 H 0.15 3.44 8.06 -52.49 -0.42 3.02 15 25 H 0.15 2.44 5.11 -52.49 -0.27 2.17 15 26 H 0.13 2.59 8.06 -52.49 -0.42 2.17 15 27 H 0.28 6.96 8.30 -40.82 -0.34 6.62 15 LS Contribution 244.62 15.07 3.69 3.69 Total: -1.00 -32.12 244.62 -5.31 -37.43 By element: Atomic # 1 Polarization: 6.45 SS G_CDS: -2.23 Total: 4.22 kcal Atomic # 6 Polarization: -5.71 SS G_CDS: -2.83 Total: -8.55 kcal Atomic # 7 Polarization: -51.78 SS G_CDS: 1.09 Total: -50.70 kcal Atomic # 14 Polarization: 18.93 SS G_CDS: -5.02 Total: 13.91 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -32.12 -5.31 -37.43 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074279364.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 198.284 kcal (2) G-P(sol) polarization free energy of solvation -32.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 166.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.431 kcal (6) G-S(sol) free energy of system = (1) + (5) 160.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds