Wall clock time and date at job start Mon Mar 30 2020 02:38:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99980 * 2 1 4 4 H 1.48495 * 109.47389 * 270.00043 * 3 2 1 5 5 H 1.48497 * 109.46972 * 30.00477 * 3 2 1 6 6 H 1.48503 * 109.46932 * 149.99725 * 3 2 1 7 7 C 1.37884 * 120.00164 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99746 * 0.02562 * 7 2 1 9 9 C 1.50700 * 120.00252 * 179.97438 * 7 2 1 10 10 C 1.50693 * 109.47224 * 179.97438 * 9 7 2 11 11 O 1.20762 * 119.99964 * 0.02562 * 10 9 7 12 12 C 1.50697 * 120.00097 * 180.02562 * 10 9 7 13 13 C 1.52995 * 109.47299 * 180.02562 * 12 10 9 14 14 C 1.50707 * 109.47301 * 179.97438 * 13 12 10 15 15 C 1.38238 * 119.99792 * 90.00016 * 14 13 12 16 16 C 1.38235 * 119.99712 * 179.97438 * 15 14 13 17 17 C 1.38234 * 120.00220 * 359.97124 * 16 15 14 18 18 C 1.38233 * 120.00037 * 0.28719 * 17 16 15 19 19 C 1.38234 * 120.00179 * 269.97953 * 14 13 12 20 20 H 0.96995 * 119.99968 * 359.97438 * 1 2 3 21 21 H 1.09003 * 109.46811 * 59.99920 * 9 7 2 22 22 H 1.08996 * 109.47124 * 300.00412 * 9 7 2 23 23 H 1.08995 * 109.47274 * 60.00342 * 12 10 9 24 24 H 1.09004 * 109.47166 * 300.00489 * 12 10 9 25 25 H 1.09005 * 109.47610 * 60.00298 * 13 12 10 26 26 H 1.09000 * 109.47256 * 299.99639 * 13 12 10 27 27 H 1.08005 * 120.00068 * 359.97438 * 15 14 13 28 28 H 1.07999 * 119.99770 * 179.97438 * 16 15 14 29 29 H 1.08002 * 119.99744 * 180.02562 * 17 16 15 30 30 H 1.07998 * 120.00395 * 179.72811 * 18 17 16 31 31 H 1.07999 * 119.99968 * 359.97438 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1941 0.0000 10 6 4.0139 -2.6149 0.0013 11 8 3.2292 -3.5327 0.0022 12 6 5.4955 -2.8902 0.0017 13 6 5.7333 -4.4016 0.0025 14 6 7.2150 -4.6770 0.0022 15 6 7.8949 -4.8026 1.1992 16 6 9.2539 -5.0557 1.1989 17 6 9.9329 -5.1839 0.0016 18 6 9.2540 -5.0530 -1.1954 19 6 7.8941 -4.8044 -1.1951 20 1 -0.4850 0.8400 0.0004 21 1 3.8752 -0.6797 0.8895 22 1 3.8746 -0.6808 -0.8904 23 1 5.9466 -2.4507 0.8912 24 1 5.9467 -2.4522 -0.8887 25 1 5.2824 -4.8410 -0.8874 26 1 5.2822 -4.8399 0.8927 27 1 7.3644 -4.7029 2.1347 28 1 9.7852 -5.1534 2.1341 29 1 10.9945 -5.3821 0.0015 30 1 9.7852 -5.1487 -2.1308 31 1 7.3628 -4.7071 -2.1303 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075577834.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:22 Heat of formation + Delta-G solvation = -30.546876 kcal Electronic energy + Delta-G solvation = -13508.905388 eV Core-core repulsion = 11140.683394 eV Total energy + Delta-G solvation = -2368.221994 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.45170 -38.40400 -33.83603 -32.85331 -30.94276 -30.31880 -29.09828 -25.04877 -22.61766 -22.59589 -20.78612 -18.55156 -16.89198 -16.76975 -15.52320 -15.39017 -14.59689 -14.52681 -14.48855 -13.61850 -13.47215 -12.93899 -12.74034 -12.70431 -12.26604 -11.60219 -11.48750 -11.19336 -11.07210 -10.80885 -10.68529 -10.55861 -9.92885 -9.28505 -8.98493 -8.88385 -8.58610 -8.36600 -6.04482 -4.04444 1.30641 1.33744 2.94037 3.27038 3.34327 3.35225 3.72476 4.40731 4.64993 4.81020 4.91149 5.03639 5.21367 5.25904 5.30743 5.36673 5.48697 5.54175 5.79205 5.92102 6.00279 6.12068 6.32429 6.41038 6.43669 6.53604 6.66418 6.71164 6.95399 6.95911 7.62468 8.43885 8.63111 9.11622 9.54541 11.08714 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.053833 B = 0.005192 C = 0.005002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 519.998564 B = 5391.760947 C = 5596.667293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.068 3.932 3 Si 0.875 3.125 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.266 1.266 7 C -0.521 4.521 8 H 0.089 0.911 9 C -0.064 4.064 10 C 0.360 3.640 11 O -0.453 6.453 12 C -0.169 4.169 13 C -0.075 4.075 14 C -0.073 4.073 15 C -0.119 4.119 16 C -0.120 4.120 17 C -0.132 4.132 18 C -0.120 4.120 19 C -0.119 4.119 20 H 0.264 0.736 21 H 0.050 0.950 22 H 0.046 0.954 23 H 0.091 0.909 24 H 0.091 0.909 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.122 0.878 28 H 0.119 0.881 29 H 0.118 0.882 30 H 0.119 0.881 31 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.681 -7.187 0.021 20.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.133 4.133 3 Si 0.702 3.298 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.190 1.190 7 C -0.558 4.558 8 H 0.107 0.893 9 C -0.101 4.101 10 C 0.235 3.765 11 O -0.326 6.326 12 C -0.207 4.207 13 C -0.112 4.112 14 C -0.073 4.073 15 C -0.137 4.137 16 C -0.138 4.138 17 C -0.150 4.150 18 C -0.138 4.138 19 C -0.137 4.137 20 H 0.074 0.926 21 H 0.068 0.932 22 H 0.064 0.936 23 H 0.109 0.891 24 H 0.109 0.891 25 H 0.096 0.904 26 H 0.096 0.904 27 H 0.140 0.860 28 H 0.137 0.863 29 H 0.136 0.864 30 H 0.137 0.863 31 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 19.089 -7.560 0.024 20.532 hybrid contribution 0.539 1.109 -0.018 1.233 sum 19.628 -6.451 0.005 20.661 Atomic orbital electron populations 1.69904 1.06247 1.26853 1.50720 1.25009 0.94778 0.98869 0.94661 0.86864 0.80352 0.83945 0.78597 1.20139 1.21164 1.19026 1.21059 0.88283 0.95540 1.50952 0.89334 1.20059 0.99537 0.91845 0.98660 1.24747 0.88934 0.92700 0.70096 1.90277 1.59154 1.47841 1.35306 1.22219 0.97996 0.96262 1.04214 1.20461 0.90511 0.96083 1.04167 1.20063 0.96211 0.97891 0.93128 1.21123 0.94419 1.00274 0.97851 1.21133 0.94540 1.00127 0.97984 1.21104 0.99701 1.01441 0.92727 1.21134 0.94529 1.00134 0.97986 1.21122 0.94411 1.00292 0.97845 0.92623 0.93222 0.93650 0.89074 0.89077 0.90424 0.90419 0.85993 0.86278 0.86438 0.86277 0.85994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.04 13.96 55.43 0.77 -27.27 16 2 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 3 Si 0.88 21.07 27.47 -169.99 -4.67 16.41 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.27 -5.97 6.54 56.52 0.37 -5.60 16 7 C -0.52 -15.21 9.48 -34.44 -0.33 -15.54 16 8 H 0.09 2.91 7.00 -52.49 -0.37 2.54 16 9 C -0.06 -1.49 4.46 -29.04 -0.13 -1.62 16 10 C 0.36 7.48 7.15 -29.04 -0.21 7.27 16 11 O -0.45 -10.96 15.08 6.00 0.09 -10.87 16 12 C -0.17 -2.56 5.62 -27.89 -0.16 -2.71 16 13 C -0.07 -1.06 4.63 -27.88 -0.13 -1.19 16 14 C -0.07 -0.91 5.13 -104.62 -0.54 -1.45 16 15 C -0.12 -1.37 9.70 -39.58 -0.38 -1.76 16 16 C -0.12 -1.23 10.05 -39.58 -0.40 -1.62 16 17 C -0.13 -1.29 10.05 -39.58 -0.40 -1.69 16 18 C -0.12 -1.23 10.05 -39.58 -0.40 -1.62 16 19 C -0.12 -1.37 9.70 -39.58 -0.38 -1.76 16 20 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 21 H 0.05 1.11 7.20 -51.93 -0.37 0.73 16 22 H 0.05 1.00 7.57 -51.93 -0.39 0.60 16 23 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 24 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 25 H 0.08 1.14 8.04 -51.93 -0.42 0.72 16 26 H 0.08 1.14 8.04 -51.93 -0.42 0.72 16 27 H 0.12 1.28 8.06 -52.48 -0.42 0.85 16 28 H 0.12 0.96 8.06 -52.49 -0.42 0.53 16 29 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 30 H 0.12 0.96 8.06 -52.49 -0.42 0.53 16 31 H 0.12 1.28 8.06 -52.49 -0.42 0.85 16 LS Contribution 271.49 15.07 4.09 4.09 Total: -1.00 -32.75 271.49 -7.36 -40.10 By element: Atomic # 1 Polarization: 3.43 SS G_CDS: -4.10 Total: -0.66 kcal Atomic # 6 Polarization: -18.25 SS G_CDS: -3.55 Total: -21.79 kcal Atomic # 7 Polarization: -28.04 SS G_CDS: 0.77 Total: -27.27 kcal Atomic # 8 Polarization: -10.96 SS G_CDS: 0.09 Total: -10.87 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -4.67 Total: 16.41 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -32.75 -7.36 -40.10 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075577834.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.554 kcal (2) G-P(sol) polarization free energy of solvation -32.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds