Wall clock time and date at job start Mon Mar 30 2020 02:38:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99980 * 2 1 4 4 H 1.48495 * 109.47389 * 270.00043 * 3 2 1 5 5 H 1.48497 * 109.46972 * 30.00477 * 3 2 1 6 6 H 1.48503 * 109.46932 * 149.99725 * 3 2 1 7 7 C 1.37884 * 120.00164 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99746 * 0.02562 * 7 2 1 9 9 C 1.50700 * 120.00252 * 179.97438 * 7 2 1 10 10 C 1.50693 * 109.47224 * 179.97438 * 9 7 2 11 11 O 1.20762 * 119.99964 * 0.02562 * 10 9 7 12 12 C 1.50697 * 120.00097 * 180.02562 * 10 9 7 13 13 C 1.52995 * 109.47299 * 180.02562 * 12 10 9 14 14 C 1.50707 * 109.47301 * 179.97438 * 13 12 10 15 15 C 1.38238 * 119.99792 * 90.00016 * 14 13 12 16 16 C 1.38235 * 119.99712 * 179.97438 * 15 14 13 17 17 C 1.38234 * 120.00220 * 359.97124 * 16 15 14 18 18 C 1.38233 * 120.00037 * 0.28719 * 17 16 15 19 19 C 1.38234 * 120.00179 * 269.97953 * 14 13 12 20 20 H 0.96995 * 119.99968 * 359.97438 * 1 2 3 21 21 H 1.09003 * 109.46811 * 59.99920 * 9 7 2 22 22 H 1.08996 * 109.47124 * 300.00412 * 9 7 2 23 23 H 1.08995 * 109.47274 * 60.00342 * 12 10 9 24 24 H 1.09004 * 109.47166 * 300.00489 * 12 10 9 25 25 H 1.09005 * 109.47610 * 60.00298 * 13 12 10 26 26 H 1.09000 * 109.47256 * 299.99639 * 13 12 10 27 27 H 1.08005 * 120.00068 * 359.97438 * 15 14 13 28 28 H 1.07999 * 119.99770 * 179.97438 * 16 15 14 29 29 H 1.08002 * 119.99744 * 180.02562 * 17 16 15 30 30 H 1.07998 * 120.00395 * 179.72811 * 18 17 16 31 31 H 1.07999 * 119.99968 * 359.97438 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1941 0.0000 10 6 4.0139 -2.6149 0.0013 11 8 3.2292 -3.5327 0.0022 12 6 5.4955 -2.8902 0.0017 13 6 5.7333 -4.4016 0.0025 14 6 7.2150 -4.6770 0.0022 15 6 7.8949 -4.8026 1.1992 16 6 9.2539 -5.0557 1.1989 17 6 9.9329 -5.1839 0.0016 18 6 9.2540 -5.0530 -1.1954 19 6 7.8941 -4.8044 -1.1951 20 1 -0.4850 0.8400 0.0004 21 1 3.8752 -0.6797 0.8895 22 1 3.8746 -0.6808 -0.8904 23 1 5.9466 -2.4507 0.8912 24 1 5.9467 -2.4522 -0.8887 25 1 5.2824 -4.8410 -0.8874 26 1 5.2822 -4.8399 0.8927 27 1 7.3644 -4.7029 2.1347 28 1 9.7852 -5.1534 2.1341 29 1 10.9945 -5.3821 0.0015 30 1 9.7852 -5.1487 -2.1308 31 1 7.3628 -4.7071 -2.1303 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075577834.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:22 Heat of formation + Delta-G solvation = -50.216810 kcal Electronic energy + Delta-G solvation = -13509.758340 eV Core-core repulsion = 11140.683394 eV Total energy + Delta-G solvation = -2369.074946 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.57762 -39.79445 -35.05419 -34.89883 -32.07555 -31.71877 -30.42102 -26.54475 -24.23714 -23.40100 -21.76697 -20.19132 -18.99447 -17.65048 -16.73825 -16.68778 -16.43894 -15.72585 -15.68928 -15.31454 -14.40608 -14.31143 -14.03410 -13.83834 -13.67243 -13.26387 -12.94372 -12.59487 -12.38866 -12.15223 -11.92002 -11.75828 -11.68812 -11.53197 -10.79630 -10.27071 -9.77235 -9.51258 -8.28156 -6.36461 0.48738 0.54928 1.28919 1.39411 1.43035 1.53710 2.37490 2.90456 3.05818 3.34214 3.96131 4.04889 4.14733 4.23817 4.29156 4.35822 4.61980 4.69156 4.69339 4.79269 4.97125 4.99448 5.11843 5.13887 5.24148 5.24734 5.55996 5.63098 5.67283 5.79281 6.17735 6.25435 6.76643 6.93494 7.28025 8.89599 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.053833 B = 0.005192 C = 0.005002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 519.998564 B = 5391.760947 C = 5596.667293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C -0.001 4.001 3 Si 0.961 3.039 4 H -0.262 1.262 5 H -0.286 1.286 6 H -0.230 1.230 7 C -0.542 4.542 8 H 0.027 0.973 9 C -0.070 4.070 10 C 0.360 3.640 11 O -0.501 6.501 12 C -0.152 4.152 13 C -0.069 4.069 14 C -0.088 4.088 15 C -0.131 4.131 16 C -0.124 4.124 17 C -0.132 4.132 18 C -0.124 4.124 19 C -0.131 4.131 20 H 0.267 0.733 21 H 0.073 0.927 22 H 0.071 0.929 23 H 0.116 0.884 24 H 0.117 0.883 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.126 0.874 28 H 0.141 0.859 29 H 0.144 0.856 30 H 0.141 0.859 31 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.625 -5.865 0.029 24.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.197 4.197 3 Si 0.782 3.218 4 H -0.187 1.187 5 H -0.212 1.212 6 H -0.153 1.153 7 C -0.580 4.580 8 H 0.046 0.954 9 C -0.107 4.107 10 C 0.239 3.761 11 O -0.377 6.377 12 C -0.189 4.189 13 C -0.106 4.106 14 C -0.088 4.088 15 C -0.149 4.149 16 C -0.142 4.142 17 C -0.149 4.149 18 C -0.142 4.142 19 C -0.149 4.149 20 H 0.076 0.924 21 H 0.091 0.909 22 H 0.089 0.911 23 H 0.134 0.866 24 H 0.135 0.865 25 H 0.082 0.918 26 H 0.082 0.918 27 H 0.144 0.856 28 H 0.159 0.841 29 H 0.161 0.839 30 H 0.159 0.841 31 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 23.067 -6.255 0.033 23.900 hybrid contribution -0.730 0.588 -0.024 0.938 sum 22.336 -5.667 0.009 23.044 Atomic orbital electron populations 1.70103 1.08841 1.28389 1.52271 1.26190 0.95762 1.04035 0.93686 0.85530 0.79811 0.76863 0.79602 1.18681 1.21237 1.15267 1.21322 0.91781 0.93556 1.51312 0.95450 1.20127 0.95468 0.94522 1.00595 1.25182 0.91572 0.91080 0.68315 1.90279 1.61105 1.48712 1.37633 1.22105 0.93004 0.97313 1.06476 1.20326 0.92050 0.95320 1.02945 1.19912 0.94922 0.99882 0.94128 1.21285 0.95292 1.00634 0.97702 1.21440 0.94073 0.99353 0.99322 1.21487 1.01062 1.00079 0.92316 1.21440 0.94061 0.99358 0.99323 1.21284 0.95284 1.00644 0.97696 0.92381 0.90948 0.91083 0.86560 0.86518 0.91750 0.91755 0.85575 0.84106 0.83854 0.84101 0.85569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -61.83 13.96 21.45 0.30 -61.54 16 2 C 0.00 -0.04 5.47 84.66 0.46 0.43 16 3 Si 0.96 42.60 27.47 68.60 1.88 44.48 16 4 H -0.26 -11.01 7.11 99.48 0.71 -10.31 16 5 H -0.29 -12.66 7.11 99.48 0.71 -11.95 16 6 H -0.23 -8.83 6.54 99.48 0.65 -8.18 16 7 C -0.54 -32.66 9.48 25.60 0.24 -32.42 16 8 H 0.03 1.92 7.00 -2.91 -0.02 1.90 16 9 C -0.07 -3.17 4.46 29.10 0.13 -3.04 16 10 C 0.36 14.87 7.15 29.10 0.21 15.08 16 11 O -0.50 -25.36 15.08 -1.45 -0.02 -25.38 16 12 C -0.15 -4.27 5.62 29.85 0.17 -4.10 16 13 C -0.07 -1.91 4.63 29.85 0.14 -1.77 16 14 C -0.09 -2.07 5.13 -19.86 -0.10 -2.18 16 15 C -0.13 -2.77 9.70 22.27 0.22 -2.55 16 16 C -0.12 -2.16 10.05 22.27 0.22 -1.94 16 17 C -0.13 -2.12 10.05 22.27 0.22 -1.90 16 18 C -0.12 -2.16 10.05 22.27 0.22 -1.94 16 19 C -0.13 -2.76 9.70 22.27 0.22 -2.55 16 20 H 0.27 15.95 8.31 -92.71 -0.77 15.18 16 21 H 0.07 2.98 7.20 -2.39 -0.02 2.97 16 22 H 0.07 2.89 7.57 -2.39 -0.02 2.87 16 23 H 0.12 2.75 8.14 -2.39 -0.02 2.74 16 24 H 0.12 2.75 8.14 -2.38 -0.02 2.73 16 25 H 0.06 1.92 8.04 -2.38 -0.02 1.90 16 26 H 0.06 1.92 8.04 -2.39 -0.02 1.90 16 27 H 0.13 2.44 8.06 -2.91 -0.02 2.42 16 28 H 0.14 1.77 8.06 -2.91 -0.02 1.75 16 29 H 0.14 1.53 8.06 -2.91 -0.02 1.50 16 30 H 0.14 1.77 8.06 -2.91 -0.02 1.75 16 31 H 0.13 2.44 8.06 -2.91 -0.02 2.42 16 Total: -1.00 -75.29 271.49 5.56 -69.73 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: 1.04 Total: 11.58 kcal Atomic # 6 Polarization: -41.23 SS G_CDS: 2.35 Total: -38.88 kcal Atomic # 7 Polarization: -61.83 SS G_CDS: 0.30 Total: -61.54 kcal Atomic # 8 Polarization: -25.36 SS G_CDS: -0.02 Total: -25.38 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 1.88 Total: 44.48 kcal Total: -75.29 5.56 -69.73 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075577834.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.515 kcal (2) G-P(sol) polarization free energy of solvation -75.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds