Wall clock time and date at job start Mon Mar 30 2020 02:33:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31021 * 1 3 3 Si 1.86793 * 120.00419 * 2 1 4 4 H 1.48505 * 109.46942 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47204 * 119.99757 * 3 2 1 6 6 H 1.48497 * 109.47108 * 239.99720 * 3 2 1 7 7 C 1.39701 * 119.99466 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99733 * 204.65518 * 7 2 1 9 9 C 1.41376 * 119.99934 * 24.66154 * 7 2 1 10 10 C 1.47279 * 127.42006 * 23.70091 * 9 7 2 11 11 C 1.33781 * 106.50856 * 179.84678 * 10 9 7 12 12 O 1.34957 * 109.19781 * 0.41769 * 11 10 9 13 13 C 1.33702 * 111.22469 * 359.72857 * 12 11 10 14 14 C 1.50707 * 126.04546 * 179.97438 * 13 12 11 15 15 C 1.52999 * 117.50062 * 8.74971 * 14 13 12 16 16 C 1.52999 * 117.50075 * 300.08910 * 14 13 12 17 17 C 1.51659 * 110.09363 * 180.18225 * 11 10 9 18 18 C 1.54430 * 105.02647 * 17.23350 * 17 11 10 19 19 C 1.51079 * 142.61241 * 0.98725 * 10 9 7 20 20 H 0.96995 * 120.00573 * 185.82701 * 1 2 3 21 21 H 1.09004 * 115.54292 * 154.42163 * 14 13 12 22 22 H 1.09001 * 117.49505 * 0.02562 * 15 14 13 23 23 H 1.09001 * 117.49856 * 145.01841 * 15 14 13 24 24 H 1.08999 * 117.49758 * 214.98034 * 16 14 13 25 25 H 1.08996 * 117.49649 * 359.97432 * 16 14 13 26 26 H 1.09001 * 110.32899 * 136.12415 * 17 11 10 27 27 H 1.09003 * 110.33316 * 258.34785 * 17 11 10 28 28 H 1.08998 * 110.96366 * 92.56366 * 18 17 11 29 29 H 1.08997 * 110.96475 * 216.27258 * 18 17 11 30 30 H 1.09007 * 110.53558 * 43.53821 * 19 10 9 31 31 H 1.09001 * 110.21820 * 281.32225 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3102 0.0000 0.0000 3 14 2.2443 1.6176 0.0000 4 1 1.2793 2.7464 -0.0006 5 1 3.0980 1.6963 1.2125 6 1 3.0981 1.6962 -1.2124 7 6 2.0086 -1.2099 0.0005 8 1 3.0147 -1.2524 0.3907 9 6 1.3983 -2.3786 -0.5098 10 6 0.2967 -2.4606 -1.4839 11 6 0.0515 -3.7622 -1.6718 12 8 0.8891 -4.4874 -0.9011 13 6 1.7046 -3.6967 -0.1958 14 6 2.7677 -4.1545 0.7692 15 6 3.0805 -5.6514 0.8179 16 6 2.3195 -4.9903 1.9698 17 6 -1.0747 -3.9412 -2.6716 18 6 -1.1870 -2.5819 -3.3958 19 6 -0.6170 -1.6121 -2.3369 20 1 -0.4851 -0.8356 0.0853 21 1 3.5961 -3.4621 0.9191 22 1 2.5175 -6.3050 0.1515 23 1 4.1146 -5.9439 1.0002 24 1 2.8532 -4.8481 2.9095 25 1 1.2556 -5.2087 2.0619 26 1 -0.8282 -4.7299 -3.3825 27 1 -2.0062 -4.1733 -2.1553 28 1 -0.5803 -2.5711 -4.3013 29 1 -2.2266 -2.3456 -3.6226 30 1 -0.0558 -0.8115 -2.8189 31 1 -1.4219 -1.1977 -1.7297 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000077089904.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:39 Heat of formation + Delta-G solvation = 29.047923 kcal Electronic energy + Delta-G solvation = -14650.418045 eV Core-core repulsion = 12284.780276 eV Total energy + Delta-G solvation = -2365.637769 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.76108 -36.60358 -35.60267 -33.86734 -30.02896 -27.14225 -27.02178 -24.79339 -21.84983 -21.73497 -20.31260 -19.92044 -17.52370 -16.84412 -15.45123 -15.20319 -14.65046 -14.01885 -13.78012 -13.64424 -12.72862 -12.38632 -11.97195 -11.83976 -11.50448 -11.07537 -10.97417 -10.69957 -10.51029 -10.43472 -10.27227 -10.19092 -9.93858 -9.56887 -9.41059 -8.83672 -7.75952 -7.05118 -6.76572 -4.13712 2.99349 3.24286 3.28087 3.45757 3.84283 4.00459 4.20315 4.67025 5.24697 5.27672 5.40894 5.48663 5.57997 5.63552 5.82749 6.00381 6.08707 6.14525 6.22739 6.31320 6.37198 6.49226 6.71260 6.78999 6.82438 6.87703 7.15517 7.22627 7.68940 7.74551 8.12730 8.23910 8.67318 9.03448 9.16020 10.35736 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.020021 B = 0.014179 C = 0.008817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.216475 B = 1974.228645 C = 3174.823347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.816 5.816 2 C 0.041 3.959 3 Si 1.062 2.938 4 H -0.277 1.277 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.523 4.523 8 H 0.070 0.930 9 C 0.061 3.939 10 C -0.222 4.222 11 C -0.069 4.069 12 O -0.184 6.184 13 C -0.186 4.186 14 C -0.005 4.005 15 C -0.193 4.193 16 C -0.188 4.188 17 C -0.016 4.016 18 C -0.119 4.119 19 C -0.039 4.039 20 H 0.292 0.708 21 H 0.114 0.886 22 H 0.089 0.911 23 H 0.086 0.914 24 H 0.087 0.913 25 H 0.087 0.913 26 H 0.064 0.936 27 H 0.073 0.927 28 H 0.067 0.933 29 H 0.073 0.927 30 H 0.060 0.940 31 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.087 -3.614 -2.405 4.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C -0.178 4.178 3 Si 0.888 3.112 4 H -0.202 1.202 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.553 4.553 8 H 0.088 0.912 9 C 0.059 3.941 10 C -0.225 4.225 11 C -0.119 4.119 12 O -0.086 6.086 13 C -0.233 4.233 14 C -0.023 4.023 15 C -0.230 4.230 16 C -0.225 4.225 17 C -0.053 4.053 18 C -0.157 4.157 19 C -0.076 4.076 20 H 0.105 0.895 21 H 0.132 0.868 22 H 0.107 0.893 23 H 0.104 0.896 24 H 0.105 0.895 25 H 0.105 0.895 26 H 0.083 0.917 27 H 0.091 0.909 28 H 0.086 0.914 29 H 0.091 0.909 30 H 0.078 0.922 31 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -0.329 -2.257 -2.447 3.345 hybrid contribution 0.250 -1.624 0.157 1.650 sum -0.079 -3.881 -2.289 4.507 Atomic orbital electron populations 1.70505 1.08013 1.33376 1.32301 1.26663 0.95776 1.03500 0.91832 0.83676 0.75587 0.74401 0.77580 1.20195 1.20525 1.20479 1.19585 1.02226 0.93196 1.40297 0.91238 1.18419 0.91452 0.91991 0.92282 1.22051 1.02813 0.94367 1.03265 1.22386 0.97943 0.91248 1.00282 1.83138 1.40251 1.37233 1.47960 1.20871 1.05386 0.87546 1.09532 1.19649 0.96095 0.91804 0.94723 1.22910 1.00151 0.97248 1.02692 1.23005 1.00274 1.06245 0.92969 1.20473 0.92942 0.98211 0.93673 1.22422 1.00750 0.94294 0.98218 1.20318 0.96809 0.96028 0.94450 0.89495 0.86824 0.89282 0.89568 0.89472 0.89460 0.91711 0.90910 0.91384 0.90852 0.92176 0.91147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -22.46 12.09 55.54 0.67 -21.78 16 2 C 0.04 1.10 5.27 -17.35 -0.09 1.01 16 3 Si 1.06 22.82 29.99 -169.99 -5.10 17.73 16 4 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 5 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 6 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 7 C -0.52 -14.64 9.08 -37.84 -0.34 -14.99 16 8 H 0.07 1.90 7.75 -52.49 -0.41 1.49 16 9 C 0.06 1.72 5.58 -104.78 -0.58 1.13 16 10 C -0.22 -5.72 5.54 -102.33 -0.57 -6.29 16 11 C -0.07 -1.64 8.16 -35.40 -0.29 -1.93 16 12 O -0.18 -4.73 10.26 5.46 0.06 -4.68 16 13 C -0.19 -4.87 6.96 -34.05 -0.24 -5.10 16 14 C 0.00 -0.10 6.03 -91.77 -0.55 -0.66 16 15 C -0.19 -3.54 10.17 -26.69 -0.27 -3.81 16 16 C -0.19 -3.56 10.24 -26.69 -0.27 -3.83 16 17 C -0.02 -0.28 6.79 -26.66 -0.18 -0.47 16 18 C -0.12 -2.03 7.15 -25.20 -0.18 -2.21 16 19 C -0.04 -0.85 5.59 -26.91 -0.15 -1.00 16 20 H 0.29 8.30 5.92 -40.82 -0.24 8.06 16 21 H 0.11 2.44 7.94 -51.93 -0.41 2.02 16 22 H 0.09 1.69 7.98 -51.93 -0.41 1.27 16 23 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 24 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 25 H 0.09 1.73 8.14 -51.93 -0.42 1.30 16 26 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 27 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 28 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.06 1.36 8.14 -51.92 -0.42 0.94 16 31 H 0.07 1.58 7.20 -51.93 -0.37 1.21 16 LS Contribution 262.15 15.07 3.95 3.95 Total: -1.00 -30.11 262.15 -8.17 -38.28 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: -4.03 Total: 4.66 kcal Atomic # 6 Polarization: -34.43 SS G_CDS: -3.72 Total: -38.15 kcal Atomic # 7 Polarization: -22.46 SS G_CDS: 0.67 Total: -21.78 kcal Atomic # 8 Polarization: -4.73 SS G_CDS: 0.06 Total: -4.68 kcal Atomic # 14 Polarization: 22.82 SS G_CDS: -5.10 Total: 17.73 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -30.11 -8.17 -38.28 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000077089904.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.326 kcal (2) G-P(sol) polarization free energy of solvation -30.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.278 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds