Wall clock time and date at job start Mon Mar 30 2020 02:45:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86795 * 119.99809 * 2 1 4 4 H 1.48506 * 109.47198 * 264.58458 * 3 2 1 5 5 H 1.48500 * 109.47508 * 24.58155 * 3 2 1 6 6 H 1.48504 * 109.47473 * 144.58728 * 3 2 1 7 7 C 1.37883 * 120.00221 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00183 * 4.75414 * 7 2 1 9 9 C 1.50696 * 119.99621 * 184.75166 * 7 2 1 10 10 H 1.09001 * 109.47723 * 4.83484 * 9 7 2 11 11 C 1.50703 * 109.46771 * 124.83856 * 9 7 2 12 12 C 1.38281 * 119.97684 * 59.97374 * 11 9 7 13 13 C 1.38240 * 120.11709 * 180.02562 * 12 11 9 14 14 C 1.38167 * 120.05354 * 0.02562 * 13 12 11 15 15 C 1.38714 * 119.94228 * 0.02562 * 14 13 12 16 16 O 1.35902 * 120.05587 * 179.97438 * 15 14 13 17 17 C 1.38125 * 119.96977 * 239.99553 * 11 9 7 18 18 C 1.53005 * 109.47268 * 244.83323 * 9 7 2 19 19 C 1.52994 * 117.50249 * 123.97752 * 18 9 7 20 20 C 1.53000 * 117.49605 * 55.31245 * 18 9 7 21 21 H 0.96992 * 120.00143 * 0.02562 * 1 2 3 22 22 H 1.07997 * 119.94474 * 0.02562 * 12 11 9 23 23 H 1.07997 * 119.98106 * 179.97438 * 13 12 11 24 24 H 1.08005 * 120.03024 * 180.02562 * 14 13 12 25 25 H 0.96698 * 114.00003 * 270.02432 * 16 15 14 26 26 H 1.08001 * 120.02536 * 0.25428 * 17 11 9 27 27 H 1.09004 * 115.54907 * 269.65060 * 18 9 7 28 28 H 1.09007 * 117.49575 * 359.97438 * 19 18 9 29 29 H 1.08999 * 117.50305 * 145.02211 * 19 18 9 30 30 H 1.08999 * 117.49921 * 214.98070 * 20 18 9 31 31 H 1.08993 * 117.49988 * 359.97438 * 20 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6110 1.9804 -1.3939 5 1 1.3940 2.6830 0.5824 6 1 3.4848 1.4760 0.8113 7 6 2.0046 -1.1941 0.0005 8 1 1.4675 -2.1278 -0.0766 9 6 3.5077 -1.1961 0.1086 10 1 3.8623 -0.1770 0.2630 11 6 3.9263 -2.0556 1.2736 12 6 3.5868 -3.3958 1.3006 13 6 3.9688 -4.1868 2.3681 14 6 4.6907 -3.6395 3.4114 15 6 5.0316 -2.2951 3.3872 16 8 5.7411 -1.7543 4.4124 17 6 4.6484 -1.5038 2.3138 18 6 4.1110 -1.7562 -1.1810 19 6 5.1190 -0.8805 -1.9280 20 6 3.7126 -1.0851 -2.4970 21 1 -0.4850 0.8400 -0.0004 22 1 3.0222 -3.8254 0.4864 23 1 3.7021 -5.2331 2.3871 24 1 4.9893 -4.2579 4.2450 25 1 5.1932 -1.3996 5.1259 26 1 4.9094 -0.4560 2.2944 27 1 4.2734 -2.8340 -1.1947 28 1 5.3519 0.0949 -1.5008 29 1 5.9442 -1.3821 -2.4334 30 1 3.6133 -1.7212 -3.3765 31 1 3.0204 -0.2449 -2.4440 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084347526.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:08 Heat of formation + Delta-G solvation = -1.917063 kcal Electronic energy + Delta-G solvation = -14394.520494 eV Core-core repulsion = 12027.539982 eV Total energy + Delta-G solvation = -2366.980512 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.26835 -37.25926 -35.83318 -32.81043 -31.28873 -29.33603 -27.44193 -23.56124 -22.12215 -21.51299 -21.22770 -19.19821 -17.45901 -17.00303 -15.86911 -14.96031 -14.91479 -14.56246 -14.19644 -13.47283 -13.12586 -12.73431 -12.20684 -11.83897 -11.66171 -11.39563 -11.12159 -10.82603 -10.63849 -10.47482 -10.11232 -9.78312 -9.68742 -9.26413 -8.81423 -8.57356 -8.17786 -7.83402 -6.16080 -4.14186 1.86237 2.00794 3.21001 3.28314 3.30475 4.24104 4.32524 4.67357 4.70156 5.17915 5.39867 5.49761 5.59918 5.77263 5.83124 5.99316 6.02981 6.20061 6.23790 6.32793 6.43524 6.65065 6.68685 6.83173 6.90119 6.96413 7.05683 7.19454 7.41038 7.51552 7.63656 8.05163 8.43182 8.89286 9.45189 10.96766 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.025107 B = 0.010857 C = 0.009815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.974570 B = 2578.374680 C = 2851.991689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.074 3.926 3 Si 0.867 3.133 4 H -0.271 1.271 5 H -0.289 1.289 6 H -0.264 1.264 7 C -0.492 4.492 8 H 0.078 0.922 9 C 0.060 3.940 10 H 0.052 0.948 11 C -0.008 4.008 12 C -0.116 4.116 13 C -0.109 4.109 14 C -0.172 4.172 15 C 0.095 3.905 16 O -0.506 6.506 17 C -0.157 4.157 18 C -0.120 4.120 19 C -0.206 4.206 20 C -0.166 4.166 21 H 0.265 0.735 22 H 0.123 0.877 23 H 0.116 0.884 24 H 0.115 0.885 25 H 0.383 0.617 26 H 0.117 0.883 27 H 0.089 0.911 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.195 -3.415 3.009 9.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.128 4.128 3 Si 0.695 3.305 4 H -0.197 1.197 5 H -0.215 1.215 6 H -0.189 1.189 7 C -0.530 4.530 8 H 0.096 0.904 9 C 0.041 3.959 10 H 0.070 0.930 11 C -0.009 4.009 12 C -0.134 4.134 13 C -0.127 4.127 14 C -0.191 4.191 15 C 0.051 3.949 16 O -0.316 6.316 17 C -0.176 4.176 18 C -0.138 4.138 19 C -0.243 4.243 20 C -0.203 4.203 21 H 0.075 0.925 22 H 0.141 0.859 23 H 0.134 0.866 24 H 0.133 0.867 25 H 0.237 0.763 26 H 0.135 0.865 27 H 0.108 0.892 28 H 0.100 0.900 29 H 0.098 0.902 30 H 0.099 0.901 31 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 8.493 -3.450 2.662 9.546 hybrid contribution -0.087 1.100 0.347 1.157 sum 8.406 -2.350 3.009 9.232 Atomic orbital electron populations 1.69877 1.06156 1.27027 1.50159 1.25044 0.94675 0.98622 0.94424 0.87037 0.80206 0.84154 0.79076 1.19701 1.21482 1.18925 1.20791 0.87731 0.94803 1.49662 0.90367 1.18168 0.96755 0.94125 0.86816 0.93024 1.20344 0.90600 0.94015 0.95933 1.21027 1.00023 0.93832 0.98524 1.20940 0.98301 0.99390 0.94107 1.21120 1.02577 0.94947 1.00467 1.18432 0.95471 0.91585 0.89388 1.84778 1.35550 1.79512 1.31723 1.21317 1.00858 0.99911 0.95466 1.22578 0.99973 0.96952 0.94340 1.23056 0.93080 1.01659 1.06531 1.22765 0.96552 1.03931 0.97062 0.92505 0.85923 0.86556 0.86659 0.76251 0.86460 0.89250 0.89985 0.90177 0.90139 0.88670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.38 13.96 55.43 0.77 -25.60 16 2 C 0.07 2.05 5.47 -17.82 -0.10 1.96 16 3 Si 0.87 20.81 26.76 -169.99 -4.55 16.26 16 4 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 6 H -0.26 -6.09 6.21 56.52 0.35 -5.73 16 7 C -0.49 -13.02 7.94 -34.44 -0.27 -13.29 16 8 H 0.08 2.25 7.89 -52.49 -0.41 1.84 16 9 C 0.06 1.36 2.08 -92.92 -0.19 1.17 16 10 H 0.05 1.21 3.94 -51.93 -0.20 1.00 16 11 C -0.01 -0.18 4.77 -104.65 -0.50 -0.67 16 12 C -0.12 -2.23 8.52 -39.56 -0.34 -2.57 16 13 C -0.11 -1.82 10.04 -39.61 -0.40 -2.22 16 14 C -0.17 -2.84 9.99 -39.43 -0.39 -3.24 16 15 C 0.10 1.69 6.70 -39.22 -0.26 1.43 16 16 O -0.51 -7.84 13.50 -19.43 -0.26 -8.10 16 17 C -0.16 -3.11 9.61 -39.43 -0.38 -3.49 16 18 C -0.12 -2.41 5.09 -90.62 -0.46 -2.88 16 19 C -0.21 -3.72 10.18 -26.69 -0.27 -3.99 16 20 C -0.17 -3.24 9.78 -26.69 -0.26 -3.50 16 21 H 0.26 7.37 8.31 -40.82 -0.34 7.04 16 22 H 0.12 2.32 7.80 -52.49 -0.41 1.91 16 23 H 0.12 1.60 8.06 -52.49 -0.42 1.17 16 24 H 0.12 1.61 8.06 -52.48 -0.42 1.19 16 25 H 0.38 4.09 9.06 45.56 0.41 4.50 16 26 H 0.12 2.29 7.94 -52.49 -0.42 1.87 16 27 H 0.09 1.70 7.40 -51.93 -0.38 1.31 16 28 H 0.08 1.49 8.03 -51.92 -0.42 1.07 16 29 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 30 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 31 H 0.09 2.07 7.38 -51.93 -0.38 1.68 16 LS Contribution 264.99 15.07 3.99 3.99 Total: -1.00 -29.62 264.99 -6.97 -36.58 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: -3.09 Total: 8.16 kcal Atomic # 6 Polarization: -27.47 SS G_CDS: -3.83 Total: -31.30 kcal Atomic # 7 Polarization: -26.38 SS G_CDS: 0.77 Total: -25.60 kcal Atomic # 8 Polarization: -7.84 SS G_CDS: -0.26 Total: -8.10 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -4.55 Total: 16.26 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -29.62 -6.97 -36.58 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084347526.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.668 kcal (2) G-P(sol) polarization free energy of solvation -29.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds