Wall clock time and date at job start Mon Mar 30 2020 02:30:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.38463 * 120.00365 * 2 1 4 4 C 1.39929 * 119.35131 * 0.28222 * 3 2 1 5 5 C 1.36530 * 119.73355 * 180.32478 * 4 3 2 6 6 C 1.40909 * 118.35116 * 359.42214 * 5 4 3 7 7 N 1.33734 * 133.34895 * 180.28049 * 6 5 4 8 8 C 1.32583 * 109.65273 * 180.02562 * 7 6 5 9 9 C 1.39945 * 125.32696 * 179.97438 * 8 7 6 10 10 H 1.08007 * 120.00005 * 179.97438 * 9 8 7 11 11 C 1.40319 * 120.00276 * 0.02562 * 9 8 7 12 12 N 1.30614 * 119.99685 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 120.00038 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47283 * 359.97438 * 13 11 9 15 15 H 1.48495 * 109.47376 * 119.99874 * 13 11 9 16 16 H 1.48501 * 109.46970 * 239.99780 * 13 11 9 17 17 N 1.38024 * 109.34011 * 359.97438 * 8 7 6 18 18 H 0.97002 * 126.47988 * 180.02562 * 17 8 7 19 19 C 1.37663 * 107.03763 * 359.97438 * 17 8 7 20 20 N 1.32284 * 133.48592 * 179.97438 * 19 17 8 21 21 H 1.08995 * 109.47181 * 179.97438 * 1 2 3 22 22 H 1.08995 * 109.46931 * 300.00721 * 1 2 3 23 23 H 1.09004 * 109.46942 * 60.00115 * 1 2 3 24 24 H 0.97003 * 120.00116 * 179.97438 * 2 1 3 25 25 H 1.08002 * 120.13462 * 0.02562 * 4 3 2 26 26 H 1.08002 * 120.82787 * 179.70061 * 5 4 3 27 27 H 0.97007 * 119.99462 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1574 1.1991 0.0000 4 6 1.4442 2.4029 0.0060 5 6 2.1189 3.5898 -0.0007 6 6 3.5277 3.5586 -0.0010 7 7 4.4670 4.5106 -0.0018 8 6 5.6689 3.9510 -0.0024 9 6 6.8844 4.6446 -0.0037 10 1 7.8170 4.0998 -0.0037 11 6 6.8916 6.0477 -0.0040 12 7 5.7638 6.7065 -0.0036 13 14 8.5141 6.9734 -0.0066 14 1 9.6379 6.0027 -0.0074 15 1 8.5955 7.8265 -1.2193 16 1 8.5989 7.8270 1.2056 17 7 5.5337 2.5774 -0.0014 18 1 6.2534 1.9270 -0.0012 19 6 4.1843 2.3050 0.0004 20 7 3.4819 1.1840 0.0014 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 1.9500 -0.8401 0.0004 25 1 0.3642 2.3933 0.0110 26 1 1.5863 4.5293 -0.0010 27 1 5.7688 7.6766 -0.0042 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086830952.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:53 Heat of formation + Delta-G solvation = 59.577182 kcal Electronic energy + Delta-G solvation = -13856.295138 eV Core-core repulsion = 11420.733625 eV Total energy + Delta-G solvation = -2435.561513 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.086 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.26480 -39.35220 -35.95505 -35.03890 -33.97101 -31.57037 -30.31777 -27.94495 -26.16218 -23.86633 -22.52104 -22.01289 -19.72402 -18.41355 -18.07410 -17.52912 -16.45122 -16.05960 -15.73418 -15.05515 -14.83782 -14.69114 -13.85483 -13.75801 -13.27376 -13.22803 -12.81363 -12.75742 -12.51885 -11.88567 -11.60820 -11.21825 -11.02432 -10.18835 -9.49412 -9.43580 -8.46658 -8.37389 -6.43170 0.48646 0.82457 1.45846 1.48840 1.63191 2.03544 2.29153 2.38915 2.86743 3.22749 3.56846 3.86951 4.26460 4.35331 4.47654 4.60644 4.81191 4.83673 5.03067 5.15746 5.36482 5.41363 5.55404 5.76667 6.07932 6.28415 6.41271 6.71030 6.86978 7.20820 7.55353 8.00503 8.45859 Molecular weight = 218.09amu Principal moments of inertia in cm(-1) A = 0.084919 B = 0.006763 C = 0.006285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 329.648734 B = 4139.203445 C = 4453.707053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.733 5.733 3 C 0.363 3.637 4 C -0.215 4.215 5 C -0.059 4.059 6 C -0.028 4.028 7 N -0.565 5.565 8 C 0.387 3.613 9 C -0.469 4.469 10 H 0.105 0.895 11 C 0.030 3.970 12 N -0.768 5.768 13 Si 1.006 2.994 14 H -0.248 1.248 15 H -0.267 1.267 16 H -0.267 1.267 17 N -0.629 5.629 18 H 0.416 0.584 19 C 0.208 3.792 20 N -0.561 5.561 21 H 0.103 0.897 22 H 0.055 0.945 23 H 0.055 0.945 24 H 0.402 0.598 25 H 0.162 0.838 26 H 0.133 0.867 27 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.196 -6.847 0.002 8.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.369 5.369 3 C 0.120 3.880 4 C -0.240 4.240 5 C -0.087 4.087 6 C -0.155 4.155 7 N -0.291 5.291 8 C 0.146 3.854 9 C -0.507 4.507 10 H 0.123 0.877 11 C -0.192 4.192 12 N -0.391 5.391 13 Si 0.825 3.175 14 H -0.171 1.171 15 H -0.192 1.192 16 H -0.192 1.192 17 N -0.248 5.248 18 H 0.254 0.746 19 C -0.030 4.030 20 N -0.286 5.286 21 H 0.122 0.878 22 H 0.074 0.926 23 H 0.073 0.927 24 H 0.236 0.764 25 H 0.179 0.821 26 H 0.151 0.849 27 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -5.297 -6.462 0.002 8.356 hybrid contribution 0.886 -0.292 0.001 0.933 sum -4.412 -6.754 0.003 8.067 Atomic orbital electron populations 1.21720 0.77100 1.04224 1.01425 1.43933 1.06429 1.03593 1.82995 1.18058 0.86058 0.87940 0.95903 1.20971 1.01162 0.90236 1.11680 1.20361 0.89739 0.99024 0.99552 1.20563 0.96172 0.91146 1.07609 1.71183 0.96535 1.28077 1.33321 1.20705 0.95034 0.76681 0.92972 1.18935 0.90406 0.92321 1.49072 0.87693 1.26954 1.02177 0.97958 0.92157 1.70124 1.29766 1.09358 1.29866 0.84815 0.76061 0.77941 0.78702 1.17148 1.19172 1.19179 1.43000 1.03933 1.08635 1.69263 0.74595 1.18792 0.86442 0.91148 1.06632 1.65466 1.07421 1.29628 1.26065 0.87834 0.92640 0.92652 0.76399 0.82103 0.84940 0.90509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.78 9.90 127.77 1.26 3.04 15 2 N -0.73 -20.47 5.86 -366.27 -2.15 -22.62 15 3 C 0.36 14.10 7.64 133.42 1.02 15.12 15 4 C -0.21 -8.04 9.23 22.28 0.21 -7.83 15 5 C -0.06 -2.66 10.19 22.52 0.23 -2.43 15 6 C -0.03 -1.51 7.22 40.32 0.29 -1.22 15 7 N -0.56 -34.13 9.33 -186.22 -1.74 -35.87 15 8 C 0.39 22.03 7.56 133.54 1.01 23.04 15 9 C -0.47 -24.82 9.46 23.19 0.22 -24.60 15 10 H 0.11 4.95 7.85 -2.91 -0.02 4.92 15 11 C 0.03 1.51 5.50 85.38 0.47 1.98 15 12 N -0.77 -42.15 11.85 21.89 0.26 -41.89 15 13 Si 1.01 37.01 29.56 68.60 2.03 39.04 15 14 H -0.25 -8.53 7.11 99.48 0.71 -7.83 15 15 H -0.27 -9.51 7.11 99.48 0.71 -8.80 15 16 H -0.27 -9.51 7.11 99.48 0.71 -8.80 15 17 N -0.63 -31.93 6.31 -189.83 -1.20 -33.13 15 18 H 0.42 18.08 8.96 -92.71 -0.83 17.25 15 19 C 0.21 10.82 8.45 134.14 1.13 11.95 15 20 N -0.56 -25.92 10.41 -189.48 -1.97 -27.89 15 21 H 0.10 1.17 8.14 -2.39 -0.02 1.15 15 22 H 0.05 0.96 7.89 -2.39 -0.02 0.94 15 23 H 0.05 0.96 7.91 -2.39 -0.02 0.94 15 24 H 0.40 10.36 8.95 -92.71 -0.83 9.53 15 25 H 0.16 4.51 6.63 -2.91 -0.02 4.49 15 26 H 0.13 5.51 8.06 -2.91 -0.02 5.49 15 27 H 0.28 13.97 8.29 -92.70 -0.77 13.20 15 Total: -1.00 -71.48 242.48 0.64 -70.84 By element: Atomic # 1 Polarization: 32.91 SS G_CDS: -0.43 Total: 32.48 kcal Atomic # 6 Polarization: 13.21 SS G_CDS: 5.84 Total: 19.05 kcal Atomic # 7 Polarization: -154.60 SS G_CDS: -6.80 Total: -161.40 kcal Atomic # 14 Polarization: 37.01 SS G_CDS: 2.03 Total: 39.04 kcal Total: -71.48 0.64 -70.84 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086830952.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.416 kcal (2) G-P(sol) polarization free energy of solvation -71.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.839 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds