Wall clock time and date at job start Mon Mar 30 2020 02:42:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86793 * 119.99915 * 2 1 4 4 H 1.48502 * 109.47022 * 269.99715 * 3 2 1 5 5 H 1.48496 * 109.47435 * 29.99897 * 3 2 1 6 6 H 1.48505 * 109.47224 * 149.99803 * 3 2 1 7 7 C 1.37885 * 119.99844 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99872 * 0.02562 * 7 2 1 9 9 C 1.50699 * 119.99586 * 180.02562 * 7 2 1 10 10 H 1.09004 * 109.46798 * 299.99497 * 9 7 2 11 11 O 1.42896 * 109.47456 * 60.00382 * 9 7 2 12 12 C 1.50702 * 109.46583 * 180.02562 * 9 7 2 13 13 C 1.38255 * 120.00225 * 279.99712 * 12 9 7 14 14 C 1.38208 * 120.00357 * 179.70539 * 13 12 9 15 15 C 1.38261 * 119.99533 * 0.02562 * 14 13 12 16 16 C 1.38204 * 120.00515 * 359.95684 * 15 14 13 17 17 C 1.50700 * 120.00247 * 179.97438 * 16 15 14 18 18 C 1.52999 * 117.49937 * 8.62792 * 17 16 15 19 19 C 1.52993 * 60.00010 * 252.50700 * 18 17 16 20 20 C 1.38220 * 120.00039 * 99.72663 * 12 9 7 21 21 H 0.96996 * 120.00345 * 0.02562 * 1 2 3 22 22 H 0.96698 * 113.99814 * 59.99455 * 11 9 7 23 23 H 1.08000 * 119.99329 * 359.72712 * 13 12 9 24 24 H 1.07992 * 120.00441 * 180.02562 * 14 13 12 25 25 H 1.08004 * 119.99258 * 179.97438 * 15 14 13 26 26 H 1.09000 * 115.55083 * 154.32938 * 17 16 15 27 27 H 1.09002 * 117.49869 * 359.97438 * 18 17 16 28 28 H 1.09003 * 117.50242 * 145.01596 * 18 17 16 29 29 H 1.08999 * 117.50127 * 252.50806 * 19 18 17 30 30 H 1.09006 * 117.50161 * 107.48742 * 19 18 17 31 31 H 1.08002 * 119.99604 * 0.27433 * 20 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 1 3.8751 -0.6805 -0.8889 11 8 3.9874 -0.5203 1.1679 12 6 4.0138 -2.6149 0.0010 13 6 4.0478 -3.3363 1.1800 14 6 4.5027 -4.6413 1.1788 15 6 4.9243 -5.2253 -0.0014 16 6 4.8900 -4.5045 -1.1800 17 6 5.3501 -5.1409 -2.4662 18 6 5.6514 -6.6407 -2.4440 19 6 6.7977 -5.6315 -2.5335 20 6 4.4353 -3.1989 -1.1788 21 1 -0.4850 0.8400 -0.0004 22 1 3.7018 -0.9236 1.9990 23 1 3.7185 -2.8799 2.1018 24 1 4.5288 -5.2049 2.0996 25 1 5.2802 -6.2451 -0.0021 26 1 4.9158 -4.7279 -3.3767 27 1 5.5173 -7.1671 -1.4990 28 1 5.4153 -7.2149 -3.3400 29 1 7.3158 -5.5415 -3.4882 30 1 7.4174 -5.4938 -1.6473 31 1 4.4088 -2.6353 -2.0998 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087014188.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:34 Heat of formation + Delta-G solvation = -3.508813 kcal Electronic energy + Delta-G solvation = -14106.864177 eV Core-core repulsion = 11739.814642 eV Total energy + Delta-G solvation = -2367.049535 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.35518 -37.06657 -35.37699 -32.29676 -30.82178 -30.09256 -26.99541 -23.73141 -22.69703 -22.23276 -21.36412 -19.06659 -17.43456 -16.66256 -15.55564 -14.90813 -14.82094 -14.47920 -14.09008 -13.34893 -12.90865 -12.67493 -12.46782 -12.02852 -11.80162 -11.64890 -11.18403 -11.03616 -10.71211 -10.59778 -10.36575 -10.28672 -9.95927 -9.18080 -8.70151 -8.47403 -8.14924 -7.87609 -6.15392 -4.27283 1.85511 1.98284 3.36752 3.46401 3.71980 3.85777 4.41950 4.50552 4.70482 4.94320 5.08135 5.17603 5.23895 5.45070 5.50671 5.64694 5.74770 5.82111 5.86690 5.96264 6.09867 6.12495 6.25044 6.48007 6.59428 6.89744 7.00626 7.06465 7.45470 7.53205 7.57486 8.26700 8.78662 8.96653 9.47395 10.94810 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.043410 B = 0.007329 C = 0.007094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.864115 B = 3819.631194 C = 3946.165885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.084 3.916 3 Si 0.869 3.131 4 H -0.286 1.286 5 H -0.294 1.294 6 H -0.217 1.217 7 C -0.556 4.556 8 H 0.074 0.926 9 C 0.224 3.776 10 H 0.065 0.935 11 O -0.577 6.577 12 C -0.058 4.058 13 C -0.115 4.115 14 C -0.120 4.120 15 C -0.143 4.143 16 C -0.059 4.059 17 C -0.110 4.110 18 C -0.180 4.180 19 C -0.173 4.173 20 C -0.112 4.112 21 H 0.266 0.734 22 H 0.356 0.644 23 H 0.118 0.882 24 H 0.114 0.886 25 H 0.112 0.888 26 H 0.110 0.890 27 H 0.097 0.903 28 H 0.094 0.906 29 H 0.094 0.906 30 H 0.094 0.906 31 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.121 -9.507 -1.672 14.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.120 4.120 3 Si 0.695 3.305 4 H -0.212 1.212 5 H -0.220 1.220 6 H -0.140 1.140 7 C -0.593 4.593 8 H 0.092 0.908 9 C 0.166 3.834 10 H 0.083 0.917 11 O -0.383 6.383 12 C -0.058 4.058 13 C -0.133 4.133 14 C -0.138 4.138 15 C -0.161 4.161 16 C -0.059 4.059 17 C -0.128 4.128 18 C -0.217 4.217 19 C -0.210 4.210 20 C -0.131 4.131 21 H 0.075 0.925 22 H 0.203 0.797 23 H 0.136 0.864 24 H 0.132 0.868 25 H 0.130 0.870 26 H 0.128 0.872 27 H 0.115 0.885 28 H 0.112 0.888 29 H 0.112 0.888 30 H 0.113 0.887 31 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 11.246 -9.021 -2.116 14.572 hybrid contribution -0.227 0.392 0.245 0.515 sum 11.019 -8.629 -1.871 14.120 Atomic orbital electron populations 1.69946 1.06731 1.27535 1.48409 1.25003 0.94645 0.99867 0.92520 0.87056 0.83060 0.81862 0.78526 1.21248 1.22047 1.13969 1.21393 0.88845 0.94962 1.54141 0.90762 1.18884 0.94037 0.84358 0.86084 0.91742 1.86718 1.77978 1.57216 1.16415 1.20924 0.93472 0.98771 0.92669 1.20886 0.99998 0.94121 0.98343 1.20981 0.99987 0.95382 0.97449 1.20781 1.03425 0.99335 0.92513 1.18997 0.99933 0.94071 0.92892 1.21020 0.98507 0.95989 0.97246 1.23032 1.03411 0.91980 1.03229 1.22991 0.91031 1.03880 1.03068 1.20778 0.99889 0.94245 0.98141 0.92465 0.79658 0.86365 0.86827 0.86972 0.87155 0.88473 0.88778 0.88798 0.88738 0.86445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.07 13.96 55.43 0.77 -26.30 16 2 C 0.08 2.42 5.47 -17.82 -0.10 2.32 16 3 Si 0.87 21.62 26.99 -169.99 -4.59 17.03 16 4 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 5 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 6 H -0.22 -5.28 5.31 56.52 0.30 -4.98 16 7 C -0.56 -15.51 9.32 -34.44 -0.32 -15.83 16 8 H 0.07 2.28 7.98 -52.49 -0.42 1.86 16 9 C 0.22 5.31 2.55 -29.03 -0.07 5.24 16 10 H 0.06 1.55 7.43 -51.93 -0.39 1.17 16 11 O -0.58 -13.18 9.99 -35.23 -0.35 -13.54 16 12 C -0.06 -1.21 4.91 -104.62 -0.51 -1.73 16 13 C -0.12 -2.17 9.32 -39.59 -0.37 -2.54 16 14 C -0.12 -1.96 10.05 -39.58 -0.40 -2.36 16 15 C -0.14 -2.23 9.30 -39.58 -0.37 -2.60 16 16 C -0.06 -0.98 5.61 -104.63 -0.59 -1.56 16 17 C -0.11 -1.47 6.04 -91.77 -0.55 -2.03 16 18 C -0.18 -1.98 9.86 -26.74 -0.26 -2.25 16 19 C -0.17 -1.93 10.16 -26.74 -0.27 -2.20 16 20 C -0.11 -2.15 9.36 -39.58 -0.37 -2.52 16 21 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 22 H 0.36 7.17 7.50 45.56 0.34 7.51 16 23 H 0.12 2.09 6.78 -52.49 -0.36 1.74 16 24 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 25 H 0.11 1.47 6.02 -52.48 -0.32 1.15 16 26 H 0.11 1.43 8.14 -51.93 -0.42 1.00 16 27 H 0.10 1.04 6.18 -51.93 -0.32 0.72 16 28 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 29 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 30 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.12 2.13 8.04 -52.49 -0.42 1.71 16 LS Contribution 261.28 15.07 3.94 3.94 Total: -1.00 -31.06 261.28 -7.65 -38.71 By element: Atomic # 1 Polarization: 11.43 SS G_CDS: -3.23 Total: 8.20 kcal Atomic # 6 Polarization: -23.86 SS G_CDS: -4.19 Total: -28.05 kcal Atomic # 7 Polarization: -27.07 SS G_CDS: 0.77 Total: -26.30 kcal Atomic # 8 Polarization: -13.18 SS G_CDS: -0.35 Total: -13.54 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.59 Total: 17.03 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -31.06 -7.65 -38.71 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087014188.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.200 kcal (2) G-P(sol) polarization free energy of solvation -31.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds