Wall clock time and date at job start Mon Mar 30 2020 02:42:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86793 * 119.99915 * 2 1 4 4 H 1.48502 * 109.47022 * 269.99715 * 3 2 1 5 5 H 1.48496 * 109.47435 * 29.99897 * 3 2 1 6 6 H 1.48505 * 109.47224 * 149.99803 * 3 2 1 7 7 C 1.37885 * 119.99844 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99872 * 0.02562 * 7 2 1 9 9 C 1.50699 * 119.99586 * 180.02562 * 7 2 1 10 10 H 1.09004 * 109.46798 * 299.99497 * 9 7 2 11 11 O 1.42896 * 109.47456 * 60.00382 * 9 7 2 12 12 C 1.50702 * 109.46583 * 180.02562 * 9 7 2 13 13 C 1.38255 * 120.00225 * 279.99712 * 12 9 7 14 14 C 1.38208 * 120.00357 * 179.70539 * 13 12 9 15 15 C 1.38261 * 119.99533 * 0.02562 * 14 13 12 16 16 C 1.38204 * 120.00515 * 359.95684 * 15 14 13 17 17 C 1.50700 * 120.00247 * 179.97438 * 16 15 14 18 18 C 1.52999 * 117.49937 * 8.62792 * 17 16 15 19 19 C 1.52993 * 60.00010 * 252.50700 * 18 17 16 20 20 C 1.38220 * 120.00039 * 99.72663 * 12 9 7 21 21 H 0.96996 * 120.00345 * 0.02562 * 1 2 3 22 22 H 0.96698 * 113.99814 * 59.99455 * 11 9 7 23 23 H 1.08000 * 119.99329 * 359.72712 * 13 12 9 24 24 H 1.07992 * 120.00441 * 180.02562 * 14 13 12 25 25 H 1.08004 * 119.99258 * 179.97438 * 15 14 13 26 26 H 1.09000 * 115.55083 * 154.32938 * 17 16 15 27 27 H 1.09002 * 117.49869 * 359.97438 * 18 17 16 28 28 H 1.09003 * 117.50242 * 145.01596 * 18 17 16 29 29 H 1.08999 * 117.50127 * 252.50806 * 19 18 17 30 30 H 1.09006 * 117.50161 * 107.48742 * 19 18 17 31 31 H 1.08002 * 119.99604 * 0.27433 * 20 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 1 3.8751 -0.6805 -0.8889 11 8 3.9874 -0.5203 1.1679 12 6 4.0138 -2.6149 0.0010 13 6 4.0478 -3.3363 1.1800 14 6 4.5027 -4.6413 1.1788 15 6 4.9243 -5.2253 -0.0014 16 6 4.8900 -4.5045 -1.1800 17 6 5.3501 -5.1409 -2.4662 18 6 5.6514 -6.6407 -2.4440 19 6 6.7977 -5.6315 -2.5335 20 6 4.4353 -3.1989 -1.1788 21 1 -0.4850 0.8400 -0.0004 22 1 3.7018 -0.9236 1.9990 23 1 3.7185 -2.8799 2.1018 24 1 4.5288 -5.2049 2.0996 25 1 5.2802 -6.2451 -0.0021 26 1 4.9158 -4.7279 -3.3767 27 1 5.5173 -7.1671 -1.4990 28 1 5.4153 -7.2149 -3.3400 29 1 7.3158 -5.5415 -3.4882 30 1 7.4174 -5.4938 -1.6473 31 1 4.4088 -2.6353 -2.0998 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087014188.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:34 Heat of formation + Delta-G solvation = -23.165985 kcal Electronic energy + Delta-G solvation = -14107.716576 eV Core-core repulsion = 11739.814642 eV Total energy + Delta-G solvation = -2367.901934 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.67917 -38.43783 -36.86519 -34.48247 -32.32819 -31.42831 -28.92022 -25.22156 -24.09538 -23.26579 -22.72276 -20.45348 -19.46833 -18.04125 -16.88212 -16.78768 -16.39765 -15.97978 -15.30435 -14.92839 -14.61235 -14.30778 -14.03496 -13.64453 -13.25830 -12.97411 -12.87364 -12.58216 -12.20692 -11.88302 -11.74989 -11.53055 -11.28892 -11.15482 -10.86349 -10.32921 -9.56038 -9.27799 -8.38273 -6.54054 0.51364 0.58237 1.37882 1.42903 1.72479 2.40853 2.75575 2.98186 3.22498 3.66297 3.95453 4.00369 4.06387 4.15299 4.24418 4.30051 4.36551 4.63365 4.71569 4.82962 4.94096 5.09286 5.16641 5.21357 5.29645 5.30950 5.39557 5.64502 5.74163 5.91727 6.07044 6.21375 6.57908 7.08073 7.26904 8.75759 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.043410 B = 0.007329 C = 0.007094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.864115 B = 3819.631194 C = 3946.165885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.030 3.970 3 Si 0.938 3.062 4 H -0.282 1.282 5 H -0.292 1.292 6 H -0.207 1.207 7 C -0.555 4.555 8 H 0.031 0.969 9 C 0.233 3.767 10 H 0.058 0.942 11 O -0.578 6.578 12 C -0.090 4.090 13 C -0.135 4.135 14 C -0.116 4.116 15 C -0.138 4.138 16 C -0.056 4.056 17 C -0.141 4.141 18 C -0.164 4.164 19 C -0.160 4.160 20 C -0.135 4.135 21 H 0.269 0.731 22 H 0.368 0.632 23 H 0.121 0.879 24 H 0.147 0.853 25 H 0.146 0.854 26 H 0.108 0.892 27 H 0.104 0.896 28 H 0.112 0.888 29 H 0.111 0.889 30 H 0.094 0.906 31 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.306 -10.905 -1.664 17.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.170 4.170 3 Si 0.762 3.238 4 H -0.209 1.209 5 H -0.219 1.219 6 H -0.129 1.129 7 C -0.593 4.593 8 H 0.050 0.950 9 C 0.175 3.825 10 H 0.076 0.924 11 O -0.386 6.386 12 C -0.090 4.090 13 C -0.153 4.153 14 C -0.133 4.133 15 C -0.156 4.156 16 C -0.056 4.056 17 C -0.159 4.159 18 C -0.201 4.201 19 C -0.196 4.196 20 C -0.153 4.153 21 H 0.078 0.922 22 H 0.217 0.783 23 H 0.139 0.861 24 H 0.165 0.835 25 H 0.164 0.836 26 H 0.127 0.873 27 H 0.122 0.878 28 H 0.130 0.870 29 H 0.130 0.870 30 H 0.113 0.887 31 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 13.443 -10.434 -2.102 17.146 hybrid contribution -0.898 0.670 0.233 1.144 sum 12.545 -9.764 -1.869 16.007 Atomic orbital electron populations 1.70071 1.08456 1.28564 1.50447 1.25879 0.95325 1.03553 0.92253 0.85989 0.81900 0.77310 0.78630 1.20869 1.21875 1.12873 1.21600 0.91291 0.93170 1.53192 0.95025 1.18583 0.91191 0.86646 0.86071 0.92383 1.86627 1.77675 1.57483 1.16799 1.20749 0.96095 0.97698 0.94483 1.21044 1.01006 0.95496 0.97733 1.21361 0.98376 0.94360 0.99236 1.21214 1.02011 1.00630 0.91749 1.19326 0.98400 0.93025 0.94863 1.21045 1.00954 0.98196 0.95678 1.23164 1.02070 0.90388 1.04455 1.23079 0.89881 1.02614 1.04064 1.20896 1.01208 0.95801 0.97440 0.92238 0.78302 0.86110 0.83495 0.83604 0.87346 0.87772 0.86998 0.87031 0.88724 0.86863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.71 13.96 21.45 0.30 -58.41 16 2 C 0.03 1.75 5.47 84.66 0.46 2.21 16 3 Si 0.94 45.41 26.99 68.60 1.85 47.26 16 4 H -0.28 -13.42 7.11 99.48 0.71 -12.71 16 5 H -0.29 -13.96 7.11 99.48 0.71 -13.26 16 6 H -0.21 -9.58 5.31 99.48 0.53 -9.05 16 7 C -0.56 -32.03 9.32 25.60 0.24 -31.79 16 8 H 0.03 2.04 7.98 -2.91 -0.02 2.02 16 9 C 0.23 11.24 2.55 29.10 0.07 11.31 16 10 H 0.06 2.85 7.43 -2.39 -0.02 2.83 16 11 O -0.58 -26.17 9.99 -148.98 -1.49 -27.66 16 12 C -0.09 -3.82 4.91 -19.86 -0.10 -3.92 16 13 C -0.13 -5.02 9.32 22.27 0.21 -4.81 16 14 C -0.12 -3.50 10.05 22.27 0.22 -3.28 16 15 C -0.14 -3.94 9.30 22.27 0.21 -3.74 16 16 C -0.06 -1.78 5.61 -19.87 -0.11 -1.89 16 17 C -0.14 -3.48 6.04 -11.54 -0.07 -3.55 16 18 C -0.16 -3.00 9.86 30.59 0.30 -2.70 16 19 C -0.16 -3.02 10.16 30.59 0.31 -2.71 16 20 C -0.14 -5.21 9.36 22.27 0.21 -5.01 16 21 H 0.27 15.74 8.31 -92.71 -0.77 14.97 16 22 H 0.37 14.71 7.50 -74.06 -0.56 14.15 16 23 H 0.12 4.26 6.78 -2.91 -0.02 4.24 16 24 H 0.15 3.41 8.06 -2.91 -0.02 3.39 16 25 H 0.15 3.14 6.02 -2.91 -0.02 3.13 16 26 H 0.11 2.68 8.14 -2.39 -0.02 2.66 16 27 H 0.10 1.76 6.18 -2.39 -0.01 1.75 16 28 H 0.11 1.67 8.14 -2.39 -0.02 1.66 16 29 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.09 1.81 8.14 -2.38 -0.02 1.79 16 31 H 0.11 4.27 8.04 -2.91 -0.02 4.25 16 Total: -1.00 -68.16 261.28 3.02 -65.15 By element: Atomic # 1 Polarization: 23.13 SS G_CDS: 0.40 Total: 23.53 kcal Atomic # 6 Polarization: -51.82 SS G_CDS: 1.96 Total: -49.87 kcal Atomic # 7 Polarization: -58.71 SS G_CDS: 0.30 Total: -58.41 kcal Atomic # 8 Polarization: -26.17 SS G_CDS: -1.49 Total: -27.66 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 1.85 Total: 47.26 kcal Total: -68.16 3.02 -65.15 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087014188.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.981 kcal (2) G-P(sol) polarization free energy of solvation -68.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds