Wall clock time and date at job start Mon Mar 30 2020 02:36:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86796 * 120.00118 * 2 1 4 4 H 1.48494 * 109.47618 * 270.00857 * 3 2 1 5 5 H 1.48504 * 109.46805 * 30.00818 * 3 2 1 6 6 H 1.48503 * 109.47113 * 149.99800 * 3 2 1 7 7 C 1.37877 * 119.99922 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99861 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00298 * 359.97438 * 7 2 1 10 10 H 1.09000 * 109.47230 * 59.99673 * 9 7 2 11 11 O 1.42904 * 109.46578 * 300.00065 * 9 7 2 12 12 C 1.50693 * 109.47359 * 180.02562 * 9 7 2 13 13 C 1.38263 * 120.00388 * 94.97469 * 12 9 7 14 14 C 1.38208 * 120.00213 * 179.97438 * 13 12 9 15 15 C 1.38253 * 120.00269 * 0.02562 * 14 13 12 16 16 C 1.38211 * 119.99807 * 359.77408 * 15 14 13 17 17 C 1.38211 * 120.00090 * 274.99764 * 12 9 7 18 18 C 1.50701 * 119.99964 * 359.97438 * 17 12 9 19 19 C 1.53001 * 117.51956 * 171.28326 * 18 17 12 20 20 C 1.52999 * 60.00190 * 107.47765 * 19 18 17 21 21 H 0.96996 * 120.00480 * 359.97438 * 1 2 3 22 22 H 0.96698 * 114.00298 * 299.99742 * 11 9 7 23 23 H 1.08001 * 119.99189 * 0.02562 * 13 12 9 24 24 H 1.08003 * 120.00004 * 180.02562 * 14 13 12 25 25 H 1.08002 * 120.00591 * 179.97438 * 15 14 13 26 26 H 1.08009 * 120.00208 * 180.25443 * 16 15 14 27 27 H 1.09002 * 115.55088 * 25.57935 * 18 17 12 28 28 H 1.09001 * 117.49733 * 214.97195 * 19 18 17 29 29 H 1.08995 * 117.49577 * 359.97438 * 19 18 17 30 30 H 1.09004 * 117.50150 * 252.51496 * 20 19 18 31 31 H 1.09004 * 117.51638 * 107.47550 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.6240 -2.5568 -0.8902 11 8 0.4299 -2.5751 1.1666 12 6 2.2303 -3.6446 -0.0005 13 6 2.6006 -4.2376 1.1923 14 6 3.4983 -5.2884 1.1922 15 6 4.0265 -5.7464 -0.0006 16 6 3.6531 -5.1564 -1.1934 17 6 2.7586 -4.1021 -1.1929 18 6 2.3549 -3.4559 -2.4931 19 6 3.1207 -3.8643 -3.7532 20 6 1.6824 -4.3421 -3.5436 21 1 -0.4851 0.8400 0.0004 22 1 0.9224 -2.5299 1.9976 23 1 2.1877 -3.8800 2.1240 24 1 3.7873 -5.7519 2.1240 25 1 4.7283 -6.5673 -0.0007 26 1 4.0625 -5.5168 -2.1256 27 1 2.0217 -2.4206 -2.4201 28 1 3.2912 -3.0977 -4.5091 29 1 3.9169 -4.6002 -3.6419 30 1 1.5323 -5.3925 -3.2943 31 1 0.9064 -3.8898 -4.1612 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087015912.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:07 Heat of formation + Delta-G solvation = -7.036868 kcal Electronic energy + Delta-G solvation = -14507.632471 eV Core-core repulsion = 12140.429948 eV Total energy + Delta-G solvation = -2367.202523 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.28343 -36.31043 -35.37491 -32.19386 -30.64095 -29.85233 -26.58326 -23.32894 -23.24419 -21.98901 -20.28502 -19.54532 -17.03496 -16.50368 -15.36056 -14.76137 -14.50111 -14.08758 -13.88448 -13.44592 -12.92688 -12.51079 -12.16343 -11.78768 -11.33022 -11.21687 -10.95936 -10.91073 -10.68954 -10.45983 -10.21364 -10.16610 -9.85272 -9.16090 -8.68263 -8.36929 -8.10087 -7.66909 -6.04287 -4.23385 1.95540 2.09039 3.25802 3.33218 3.36883 4.14418 4.36684 4.65006 5.07984 5.20623 5.33871 5.42178 5.50345 5.53695 5.65493 5.91962 5.95300 6.06130 6.17060 6.27394 6.35736 6.44474 6.60734 6.68823 6.81293 7.05631 7.14075 7.28604 7.66295 7.75661 7.84164 8.10748 8.79781 9.30871 9.52620 10.98701 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.025616 B = 0.010768 C = 0.009090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.785747 B = 2599.661073 C = 3079.635958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.080 3.920 3 Si 0.890 3.110 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.560 4.560 8 H 0.057 0.943 9 C 0.258 3.742 10 H 0.072 0.928 11 O -0.561 6.561 12 C -0.062 4.062 13 C -0.120 4.120 14 C -0.128 4.128 15 C -0.145 4.145 16 C -0.126 4.126 17 C -0.051 4.051 18 C -0.104 4.104 19 C -0.184 4.184 20 C -0.175 4.175 21 H 0.262 0.738 22 H 0.345 0.655 23 H 0.118 0.882 24 H 0.111 0.889 25 H 0.110 0.890 26 H 0.113 0.887 27 H 0.131 0.869 28 H 0.092 0.908 29 H 0.091 0.909 30 H 0.089 0.911 31 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.661 -7.908 -2.726 10.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.126 4.126 3 Si 0.717 3.283 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.598 4.598 8 H 0.076 0.924 9 C 0.200 3.800 10 H 0.090 0.910 11 O -0.365 6.365 12 C -0.062 4.062 13 C -0.138 4.138 14 C -0.146 4.146 15 C -0.163 4.163 16 C -0.144 4.144 17 C -0.051 4.051 18 C -0.122 4.122 19 C -0.221 4.221 20 C -0.212 4.212 21 H 0.071 0.929 22 H 0.190 0.810 23 H 0.136 0.864 24 H 0.129 0.871 25 H 0.128 0.872 26 H 0.131 0.869 27 H 0.149 0.851 28 H 0.111 0.889 29 H 0.110 0.890 30 H 0.108 0.892 31 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 5.003 -7.845 -3.186 9.835 hybrid contribution 1.066 0.970 0.397 1.495 sum 6.069 -6.875 -2.789 9.585 Atomic orbital electron populations 1.70071 1.05897 1.26587 1.46831 1.25039 0.94705 0.99069 0.93813 0.86649 0.80026 0.83358 0.78278 1.20465 1.21082 1.19750 1.21505 0.93190 0.90386 1.54739 0.92436 1.18538 0.86877 0.88031 0.86504 0.91049 1.86611 1.38182 1.96259 1.15428 1.21233 0.96918 0.96357 0.91741 1.20904 0.98205 0.96553 0.98153 1.20989 0.98384 0.97831 0.97402 1.20845 1.01673 1.00995 0.92819 1.20911 0.98858 0.97089 0.97568 1.18916 0.97315 0.95517 0.93389 1.21188 1.03258 1.00706 0.87041 1.22995 0.94871 1.03730 1.00515 1.22949 0.95470 0.99813 1.02935 0.92862 0.81023 0.86373 0.87106 0.87229 0.86950 0.85068 0.88925 0.89045 0.89218 0.88807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.86 12.84 55.43 0.71 -24.15 16 2 C 0.08 2.20 5.40 -17.82 -0.10 2.10 16 3 Si 0.89 21.00 29.54 -169.99 -5.02 15.98 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.56 -15.14 8.22 -34.44 -0.28 -15.43 16 8 H 0.06 1.57 7.74 -52.48 -0.41 1.16 16 9 C 0.26 6.54 2.39 -29.04 -0.07 6.47 16 10 H 0.07 1.97 6.94 -51.93 -0.36 1.61 16 11 O -0.56 -14.50 12.38 -35.23 -0.44 -14.94 16 12 C -0.06 -1.36 5.00 -104.63 -0.52 -1.88 16 13 C -0.12 -2.35 9.30 -39.58 -0.37 -2.72 16 14 C -0.13 -2.16 10.05 -39.59 -0.40 -2.56 16 15 C -0.15 -2.35 10.05 -39.59 -0.40 -2.75 16 16 C -0.13 -2.18 9.29 -39.58 -0.37 -2.54 16 17 C -0.05 -1.02 5.61 -104.62 -0.59 -1.60 16 18 C -0.10 -1.95 5.17 -91.77 -0.47 -2.42 16 19 C -0.18 -2.75 9.86 -26.73 -0.26 -3.01 16 20 C -0.17 -2.72 10.16 -26.73 -0.27 -2.99 16 21 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 22 H 0.35 7.86 7.32 45.56 0.33 8.19 16 23 H 0.12 2.17 6.40 -52.49 -0.34 1.83 16 24 H 0.11 1.54 8.06 -52.48 -0.42 1.12 16 25 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 26 H 0.11 1.66 6.03 -52.48 -0.32 1.34 16 27 H 0.13 2.82 6.56 -51.93 -0.34 2.48 16 28 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 29 H 0.09 1.24 6.19 -51.93 -0.32 0.92 16 30 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 31 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 LS Contribution 262.62 15.07 3.96 3.96 Total: -1.00 -29.76 262.62 -7.89 -37.65 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: -3.00 Total: 10.84 kcal Atomic # 6 Polarization: -25.24 SS G_CDS: -4.10 Total: -29.34 kcal Atomic # 7 Polarization: -24.86 SS G_CDS: 0.71 Total: -24.15 kcal Atomic # 8 Polarization: -14.50 SS G_CDS: -0.44 Total: -14.94 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -29.76 -7.89 -37.65 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087015912.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.611 kcal (2) G-P(sol) polarization free energy of solvation -29.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds