Wall clock time and date at job start Mon Mar 30 2020 02:31:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46898 * 111.00192 * 2 1 4 4 C 1.50702 * 109.46796 * 66.04407 * 3 2 1 5 5 H 1.08000 * 120.00596 * 0.02562 * 4 3 2 6 6 C 1.37887 * 120.00010 * 179.97438 * 4 3 2 7 7 N 1.31514 * 119.99993 * 179.97438 * 6 4 3 8 8 Si 1.86793 * 119.99771 * 0.02562 * 6 4 3 9 9 H 1.48506 * 109.47357 * 89.99481 * 8 6 4 10 10 H 1.48503 * 109.47245 * 209.99677 * 8 6 4 11 11 H 1.48508 * 109.47367 * 329.99935 * 8 6 4 12 12 C 1.38465 * 111.00274 * 236.04648 * 2 1 3 13 13 N 1.32575 * 120.27987 * 123.95689 * 12 2 1 14 14 N 1.28275 * 122.20089 * 180.02562 * 13 12 2 15 15 C 1.31896 * 122.66927 * 0.02562 * 14 13 12 16 16 C 1.38454 * 120.19013 * 359.97438 * 15 14 13 17 17 C 1.40110 * 117.88506 * 359.72601 * 16 15 14 18 18 C 1.43205 * 121.19574 * 180.26337 * 17 16 15 19 19 N 3.57882 * 65.46067 * 173.48971 * 2 1 3 20 20 H 1.08998 * 109.47020 * 183.94791 * 1 2 3 21 21 H 1.08991 * 109.47517 * 303.95597 * 1 2 3 22 22 H 1.09002 * 109.46943 * 63.95432 * 1 2 3 23 23 H 1.09004 * 109.47405 * 186.04146 * 3 2 1 24 24 H 1.08998 * 109.47623 * 306.04769 * 3 2 1 25 25 H 0.96996 * 119.99500 * 180.02562 * 7 6 4 26 26 H 1.08003 * 119.90600 * 179.97438 * 15 14 13 27 27 H 1.07996 * 121.06050 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6369 2.0471 1.2985 5 1 1.0745 1.5112 2.0488 6 6 2.0277 3.3491 1.5290 7 7 1.7143 3.9389 2.6619 8 14 3.0009 4.2758 0.2316 9 1 2.0643 4.9803 -0.6805 10 1 3.8881 5.2667 0.8920 11 1 3.8240 3.3169 -0.5486 12 6 1.9653 -0.7220 -1.0722 13 7 2.8019 -0.1548 -1.9302 14 7 3.2834 -0.7887 -2.9360 15 6 2.9848 -2.0473 -3.1937 16 6 2.1201 -2.7416 -2.3646 17 6 1.5899 -2.0660 -1.2576 18 6 0.6934 -2.7175 -0.3506 19 7 -0.0174 -3.2346 0.3691 20 1 -0.3633 -1.0252 0.0708 21 1 -0.3634 0.5739 0.8523 22 1 -0.3633 0.4512 -0.9233 23 1 3.0798 1.3444 -0.1082 24 1 1.5612 1.9274 -0.8309 25 1 1.9889 4.8550 2.8239 26 1 3.4159 -2.5378 -4.0539 27 1 1.8662 -3.7725 -2.5622 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087614333.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:18 Heat of formation + Delta-G solvation = 114.262137 kcal Electronic energy + Delta-G solvation = -13973.563861 eV Core-core repulsion = 11540.373665 eV Total energy + Delta-G solvation = -2433.190196 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.086 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.17969 -37.60672 -36.58829 -33.28946 -32.73619 -31.23189 -28.34889 -26.43532 -25.11624 -23.37767 -21.05988 -19.50259 -17.64538 -17.29744 -16.14113 -15.46973 -15.05890 -14.50077 -14.15536 -13.98368 -13.63850 -13.34378 -13.07652 -12.81037 -12.38935 -11.94904 -11.43665 -11.08030 -10.78550 -10.63649 -10.27598 -10.18888 -9.90823 -9.65465 -9.36463 -8.66296 -7.98478 -6.15062 -4.16473 0.29594 0.97821 2.53389 2.89915 3.28766 3.36442 3.45345 3.56436 3.63492 3.81612 4.21851 4.37756 4.54094 4.79273 4.93589 5.18634 5.43806 5.46768 5.62718 5.70594 5.95077 6.29381 6.64054 6.70380 7.25093 7.30445 7.36244 7.63759 8.42548 8.79487 8.88756 9.43855 10.96870 Molecular weight = 218.09amu Principal moments of inertia in cm(-1) A = 0.033785 B = 0.009505 C = 0.007618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.568647 B = 2944.984225 C = 3674.642249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.455 5.455 3 C 0.166 3.834 4 C -0.528 4.528 5 H 0.082 0.918 6 C 0.076 3.924 7 N -0.894 5.894 8 Si 0.870 3.130 9 H -0.275 1.275 10 H -0.284 1.284 11 H -0.256 1.256 12 C 0.310 3.690 13 N -0.271 5.271 14 N -0.196 5.196 15 C -0.010 4.010 16 C -0.043 4.043 17 C -0.063 4.063 18 C 0.270 3.730 19 N -0.399 5.399 20 H 0.060 0.940 21 H 0.105 0.895 22 H 0.041 0.959 23 H 0.052 0.948 24 H 0.011 0.989 25 H 0.266 0.734 26 H 0.177 0.823 27 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.410 -11.571 -11.983 16.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 N -0.168 5.168 3 C 0.042 3.958 4 C -0.566 4.566 5 H 0.100 0.900 6 C -0.127 4.127 7 N -0.531 5.531 8 Si 0.697 3.303 9 H -0.200 1.200 10 H -0.210 1.210 11 H -0.180 1.180 12 C 0.068 3.932 13 N -0.121 5.121 14 N -0.039 5.039 15 C -0.176 4.176 16 C -0.075 4.075 17 C -0.081 4.081 18 C -0.046 4.046 19 N -0.076 5.076 20 H 0.079 0.921 21 H 0.124 0.876 22 H 0.060 0.940 23 H 0.070 0.930 24 H 0.029 0.971 25 H 0.076 0.924 26 H 0.194 0.806 27 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 0.266 -10.975 -10.661 15.303 hybrid contribution -0.095 -0.214 -0.889 0.920 sum 0.171 -11.189 -11.551 16.082 Atomic orbital electron populations 1.22630 0.83190 1.02074 1.03754 1.58605 1.09354 1.19201 1.29664 1.20378 0.97154 0.80182 0.98108 1.20944 1.37136 0.97806 1.00747 0.90017 1.24814 0.95315 0.97128 0.95420 1.69881 1.46055 1.13372 1.23841 0.86906 0.80960 0.80385 0.82095 1.20037 1.20991 1.18020 1.21963 0.92466 0.90547 0.88209 1.73643 1.11401 1.27776 0.99284 1.72729 1.14154 1.07469 1.09582 1.24021 0.98677 0.93336 1.01529 1.22380 0.92868 1.01160 0.91091 1.16656 1.01396 0.93487 0.96528 1.24805 0.93255 0.93084 0.93414 1.81269 1.09368 1.08957 1.07988 0.92111 0.87602 0.94048 0.92977 0.97068 0.92372 0.80597 0.82571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 8.96 60.06 0.54 1.07 15 2 N -0.45 -9.37 4.58 -182.02 -0.83 -10.21 15 3 C 0.17 3.96 3.06 -4.98 -0.02 3.94 15 4 C -0.53 -14.56 9.01 -34.44 -0.31 -14.87 15 5 H 0.08 2.43 7.37 -52.49 -0.39 2.04 15 6 C 0.08 2.16 5.47 -17.82 -0.10 2.07 15 7 N -0.89 -26.77 13.96 55.43 0.77 -26.00 15 8 Si 0.87 21.17 27.47 -169.99 -4.67 16.50 15 9 H -0.27 -6.55 7.11 56.52 0.40 -6.15 15 10 H -0.28 -6.85 7.11 56.52 0.40 -6.45 15 11 H -0.26 -6.11 6.54 56.52 0.37 -5.74 15 12 C 0.31 5.53 6.47 -154.77 -1.00 4.53 15 13 N -0.27 -5.05 9.79 31.40 0.31 -4.74 15 14 N -0.20 -3.02 11.47 30.51 0.35 -2.67 15 15 C -0.01 -0.10 11.29 -17.44 -0.20 -0.30 15 16 C -0.04 -0.42 9.97 -38.80 -0.39 -0.81 15 17 C -0.06 -0.88 5.64 -106.31 -0.60 -1.48 15 18 C 0.27 3.98 12.34 -22.47 -0.28 3.70 15 19 N -0.40 -6.43 18.01 41.84 0.75 -5.68 15 20 H 0.06 1.00 4.56 -51.93 -0.24 0.77 15 21 H 0.11 2.09 6.76 -51.93 -0.35 1.74 15 22 H 0.04 0.69 8.14 -51.93 -0.42 0.27 15 23 H 0.05 1.30 6.59 -51.93 -0.34 0.96 15 24 H 0.01 0.27 7.55 -51.93 -0.39 -0.12 15 25 H 0.27 7.47 8.31 -40.82 -0.34 7.13 15 26 H 0.18 1.06 8.06 -52.48 -0.42 0.64 15 27 H 0.16 0.88 8.06 -52.49 -0.42 0.46 15 LS Contribution 243.63 15.07 3.67 3.67 Total: -1.00 -31.59 243.63 -4.14 -35.73 By element: Atomic # 1 Polarization: -2.32 SS G_CDS: -2.14 Total: -4.46 kcal Atomic # 6 Polarization: 0.20 SS G_CDS: -2.35 Total: -2.14 kcal Atomic # 7 Polarization: -50.64 SS G_CDS: 1.35 Total: -49.29 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -4.67 Total: 16.50 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -31.59 -4.14 -35.73 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087614333.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.988 kcal (2) G-P(sol) polarization free energy of solvation -31.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.726 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds