Wall clock time and date at job start Mon Mar 30 2020 02:32:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86801 * 120.00097 * 2 1 4 4 H 1.48508 * 109.47013 * 269.99498 * 3 2 1 5 5 H 1.48495 * 109.47186 * 29.99061 * 3 2 1 6 6 H 1.48498 * 109.47599 * 149.99450 * 3 2 1 7 7 C 1.37881 * 120.00181 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00016 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00241 * 180.02562 * 7 2 1 10 10 H 1.08997 * 109.68223 * 60.52369 * 9 7 2 11 11 C 1.53328 * 109.71527 * 181.07435 * 9 7 2 12 12 C 1.52737 * 108.36391 * 189.63348 * 11 9 7 13 13 C 1.50618 * 110.59444 * 308.96645 * 12 11 9 14 14 C 1.39407 * 117.75435 * 197.46257 * 13 12 11 15 15 O 1.35896 * 119.79061 * 0.23695 * 14 13 12 16 16 C 1.38443 * 120.42598 * 180.21723 * 14 13 12 17 17 C 1.38171 * 119.70991 * 0.02562 * 16 14 13 18 18 C 1.37957 * 119.83347 * 359.90285 * 17 16 14 19 19 C 1.37564 * 122.59916 * 17.52519 * 13 12 11 20 20 C 1.50640 * 122.56000 * 359.62073 * 19 13 12 21 21 H 0.96998 * 120.00084 * 0.02562 * 1 2 3 22 22 H 1.09002 * 109.68431 * 309.34847 * 11 9 7 23 23 H 1.08997 * 109.69040 * 69.87536 * 11 9 7 24 24 H 1.09010 * 109.25440 * 69.25433 * 12 11 9 25 25 H 1.08997 * 109.25676 * 188.71183 * 12 11 9 26 26 H 0.96704 * 113.99807 * 89.99824 * 15 14 13 27 27 H 1.08002 * 120.14178 * 180.02562 * 16 14 13 28 28 H 1.07996 * 120.08123 * 179.86832 * 17 16 14 29 29 H 1.07996 * 119.66946 * 180.02562 * 18 17 16 30 30 H 1.08999 * 109.25698 * 257.27757 * 20 19 13 31 31 H 1.08997 * 109.25381 * 137.85203 * 20 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4002 5 1 1.4465 2.6527 0.6998 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 1 3.8783 -0.6889 0.8946 11 6 4.0287 -2.6372 -0.0254 12 6 5.5364 -2.6126 0.2182 13 6 6.2078 -1.6381 -0.7135 14 6 7.5857 -1.7536 -0.8907 15 8 8.2717 -2.7262 -0.2347 16 6 8.2598 -0.8840 -1.7310 17 6 7.5609 0.1044 -2.3971 18 6 6.1971 0.2171 -2.2224 19 6 5.5158 -0.6548 -1.3818 20 6 4.0265 -0.4752 -1.2442 21 1 -0.4850 0.8400 -0.0004 22 1 3.5397 -3.2170 0.7574 23 1 3.8206 -3.0841 -0.9975 24 1 5.7291 -2.3153 1.2491 25 1 5.9441 -3.6093 0.0497 26 1 8.3369 -3.5587 -0.7225 27 1 9.3273 -0.9778 -1.8652 28 1 8.0810 0.7873 -3.0524 29 1 5.6533 0.9904 -2.7447 30 1 3.5322 -0.8841 -2.1255 31 1 3.7983 0.5877 -1.1658 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000108371431.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:51 Heat of formation + Delta-G solvation = -54.299033 kcal Electronic energy + Delta-G solvation = -14599.705013 eV Core-core repulsion = 12230.453048 eV Total energy + Delta-G solvation = -2369.251964 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.24730 -38.40175 -36.91885 -34.58158 -32.56847 -31.47141 -29.42700 -26.85286 -24.50924 -22.97771 -22.83487 -20.20326 -18.98136 -18.87298 -17.20624 -16.65890 -16.37486 -15.94071 -15.74252 -14.94292 -14.71546 -14.24415 -14.09057 -13.71763 -13.30592 -13.24533 -12.87228 -12.54517 -12.37584 -12.12874 -11.97743 -11.59779 -11.36380 -11.06867 -10.80872 -10.67412 -9.47878 -9.41191 -8.32567 -6.35965 0.32603 0.42694 1.25541 1.32832 1.42888 2.29199 2.70788 3.02455 3.34486 3.82871 3.87895 4.12088 4.20713 4.25751 4.40918 4.56565 4.62850 4.69536 4.81312 4.89122 5.00846 5.08715 5.14481 5.21381 5.40344 5.49057 5.55743 5.64907 5.73070 5.80036 5.98700 6.30229 6.71374 6.91226 7.29752 8.84346 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.039114 B = 0.009961 C = 0.008409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.685946 B = 2810.171682 C = 3329.062827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.015 3.985 3 Si 0.942 3.058 4 H -0.260 1.260 5 H -0.296 1.296 6 H -0.256 1.256 7 C -0.518 4.518 8 H 0.038 0.962 9 C 0.013 3.987 10 H 0.018 0.982 11 C -0.096 4.096 12 C -0.066 4.066 13 C -0.116 4.116 14 C 0.100 3.900 15 O -0.502 6.502 16 C -0.153 4.153 17 C -0.102 4.102 18 C -0.149 4.149 19 C -0.074 4.074 20 C -0.082 4.082 21 H 0.266 0.734 22 H 0.057 0.943 23 H 0.054 0.946 24 H 0.067 0.933 25 H 0.092 0.908 26 H 0.406 0.594 27 H 0.153 0.847 28 H 0.156 0.844 29 H 0.126 0.874 30 H 0.069 0.931 31 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.012 -1.912 -4.900 18.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.182 4.182 3 Si 0.769 3.231 4 H -0.186 1.186 5 H -0.223 1.223 6 H -0.180 1.180 7 C -0.556 4.556 8 H 0.056 0.944 9 C -0.006 4.006 10 H 0.036 0.964 11 C -0.134 4.134 12 C -0.103 4.103 13 C -0.117 4.117 14 C 0.055 3.945 15 O -0.315 6.315 16 C -0.171 4.171 17 C -0.120 4.120 18 C -0.167 4.167 19 C -0.074 4.074 20 C -0.118 4.118 21 H 0.075 0.925 22 H 0.076 0.924 23 H 0.073 0.927 24 H 0.086 0.914 25 H 0.110 0.890 26 H 0.265 0.735 27 H 0.170 0.830 28 H 0.174 0.826 29 H 0.144 0.856 30 H 0.087 0.913 31 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 17.924 -1.406 -4.467 18.526 hybrid contribution -0.641 0.448 -0.234 0.816 sum 17.283 -0.958 -4.702 17.937 Atomic orbital electron populations 1.70034 1.08033 1.27991 1.52739 1.25830 0.95379 1.02731 0.94288 0.85940 0.78849 0.79237 0.79109 1.18604 1.22309 1.18010 1.21383 0.91266 0.93098 1.49830 0.94377 1.19093 0.93500 0.94700 0.93300 0.96434 1.21391 0.94406 0.96629 1.00970 1.20317 0.94304 0.98098 0.97569 1.20135 0.93481 0.98389 0.99693 1.18518 0.88626 0.92853 0.94492 1.84760 1.74783 1.25142 1.46804 1.21568 1.01405 0.96944 0.97201 1.21219 0.93128 0.98242 0.99379 1.21437 0.95753 0.99856 0.99636 1.19864 0.95595 0.95296 0.96622 1.20852 0.90973 0.99438 1.00582 0.92495 0.92444 0.92709 0.91447 0.88997 0.73489 0.82965 0.82622 0.85593 0.91291 0.93533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.80 13.96 21.45 0.30 -59.50 16 2 C 0.01 0.88 5.45 84.66 0.46 1.34 16 3 Si 0.94 45.86 24.30 68.60 1.67 47.53 16 4 H -0.26 -11.86 6.96 99.48 0.69 -11.16 16 5 H -0.30 -14.27 7.11 99.48 0.71 -13.57 16 6 H -0.26 -11.99 6.53 99.48 0.65 -11.34 16 7 C -0.52 -29.97 9.13 25.60 0.23 -29.74 16 8 H 0.04 2.41 8.00 -2.91 -0.02 2.39 16 9 C 0.01 0.62 1.69 -11.52 -0.02 0.60 16 10 H 0.02 0.88 7.20 -2.39 -0.02 0.86 16 11 C -0.10 -3.85 5.23 30.62 0.16 -3.69 16 12 C -0.07 -2.17 5.27 29.73 0.16 -2.02 16 13 C -0.12 -3.89 5.75 -19.77 -0.11 -4.00 16 14 C 0.10 2.74 6.66 22.60 0.15 2.89 16 15 O -0.50 -11.44 12.53 -92.38 -1.16 -12.60 16 16 C -0.15 -3.60 9.98 22.30 0.22 -3.38 16 17 C -0.10 -2.44 10.04 22.19 0.22 -2.22 16 18 C -0.15 -4.54 9.60 22.38 0.21 -4.33 16 19 C -0.07 -2.69 5.74 -19.87 -0.11 -2.80 16 20 C -0.08 -3.54 4.33 29.74 0.13 -3.41 16 21 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 22 H 0.06 2.30 8.12 -2.39 -0.02 2.28 16 23 H 0.05 2.15 8.10 -2.39 -0.02 2.13 16 24 H 0.07 2.27 8.14 -2.38 -0.02 2.25 16 25 H 0.09 2.44 7.76 -2.39 -0.02 2.42 16 26 H 0.41 5.16 9.06 -74.05 -0.67 4.49 16 27 H 0.15 2.65 8.06 -2.91 -0.02 2.63 16 28 H 0.16 2.61 8.06 -2.91 -0.02 2.59 16 29 H 0.13 3.57 8.05 -2.91 -0.02 3.54 16 30 H 0.07 3.05 8.11 -2.39 -0.02 3.03 16 31 H 0.05 2.08 3.55 -2.39 -0.01 2.07 16 Total: -1.00 -68.70 250.79 2.91 -65.79 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: 0.39 Total: 9.54 kcal Atomic # 6 Polarization: -52.46 SS G_CDS: 1.70 Total: -50.76 kcal Atomic # 7 Polarization: -59.80 SS G_CDS: 0.30 Total: -59.50 kcal Atomic # 8 Polarization: -11.44 SS G_CDS: -1.16 Total: -12.60 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 1.67 Total: 47.53 kcal Total: -68.70 2.91 -65.79 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108371431.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.494 kcal (2) G-P(sol) polarization free energy of solvation -68.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds