Wall clock time and date at job start Mon Mar 30 2020 02:32:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99347 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 H 1.08999 * 109.67419 * 299.20692 * 9 7 2 11 11 C 1.53320 * 109.67918 * 178.66075 * 9 7 2 12 12 C 1.52739 * 108.36530 * 170.42750 * 11 9 7 13 13 C 1.50630 * 110.57801 * 51.13726 * 12 11 9 14 14 C 1.39393 * 117.75591 * 162.50056 * 13 12 11 15 15 O 1.35899 * 119.78768 * 359.43721 * 14 13 12 16 16 C 1.38438 * 120.42538 * 179.41480 * 14 13 12 17 17 C 1.38168 * 119.70730 * 0.02789 * 16 14 13 18 18 C 1.37960 * 119.83715 * 0.12721 * 17 16 14 19 19 C 1.37571 * 122.58920 * 342.17201 * 13 12 11 20 20 C 1.50640 * 122.55715 * 0.71880 * 19 13 12 21 21 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 22 22 H 1.08997 * 109.68352 * 290.16132 * 11 9 7 23 23 H 1.09009 * 109.67991 * 50.71953 * 11 9 7 24 24 H 1.08993 * 109.25674 * 290.85549 * 12 11 9 25 25 H 1.09000 * 109.22594 * 171.39859 * 12 11 9 26 26 H 0.96704 * 114.00228 * 89.99914 * 15 14 13 27 27 H 1.08004 * 120.14186 * 180.02562 * 16 14 13 28 28 H 1.08004 * 120.08185 * 180.10762 * 17 16 14 29 29 H 1.07997 * 119.66705 * 180.02562 * 18 17 16 30 30 H 1.09004 * 109.25519 * 221.98822 * 20 19 13 31 31 H 1.09011 * 109.21741 * 102.55248 * 20 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 1 0.6299 -2.5684 0.8877 11 6 2.2427 -3.6680 -0.0372 12 6 1.4681 -4.9631 0.1985 13 6 0.2910 -5.0537 -0.7370 14 6 -0.2962 -6.3042 -0.9224 15 8 0.2067 -7.3887 -0.2759 16 6 -1.3885 -6.4486 -1.7605 17 6 -1.8983 -5.3450 -2.4171 18 6 -1.3147 -4.1081 -2.2357 19 6 -0.2171 -3.9586 -1.3968 20 6 0.3711 -2.5795 -1.2511 21 1 -0.4850 0.8401 -0.0004 22 1 2.7345 -3.7057 -1.0092 23 1 2.9883 -3.5382 0.7474 24 1 1.1114 -4.9863 1.2282 25 1 2.1291 -5.8128 0.0278 26 1 -0.1903 -7.5487 0.5913 27 1 -1.8401 -7.4196 -1.9005 28 1 -2.7514 -5.4503 -3.0711 29 1 -1.7157 -3.2472 -2.7500 30 1 -0.4359 -1.8514 -1.1688 31 1 0.9725 -2.3512 -2.1312 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000108371433.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:53 Heat of formation + Delta-G solvation = -41.813352 kcal Electronic energy + Delta-G solvation = -14493.292760 eV Core-core repulsion = 12124.582215 eV Total energy + Delta-G solvation = -2368.710545 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.73640 -36.85146 -35.32070 -32.60806 -30.60359 -29.58098 -27.66767 -25.00607 -22.66205 -21.43953 -21.36022 -18.54855 -17.47276 -16.39413 -15.56210 -15.14006 -14.85394 -14.51355 -13.62564 -13.08105 -12.79324 -12.67153 -12.13462 -11.86802 -11.56628 -11.43876 -11.06184 -10.92075 -10.71003 -10.54884 -10.25054 -9.97559 -9.56108 -9.03566 -8.77169 -8.42551 -8.03863 -7.88114 -6.01172 -4.06901 1.71171 1.88248 3.31255 3.36043 3.38781 4.09928 4.42537 4.61699 5.25798 5.31510 5.33885 5.59441 5.79610 5.95169 5.97786 6.11587 6.17490 6.46236 6.61350 6.67248 6.77184 6.82287 6.91192 6.98980 7.03505 7.11396 7.34128 7.56147 7.71672 7.93283 7.99748 8.07295 8.42821 8.96874 9.58124 11.05383 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.047123 B = 0.008166 C = 0.007194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 594.044081 B = 3428.147165 C = 3890.969831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.062 3.938 3 Si 0.891 3.109 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.515 4.515 8 H 0.056 0.944 9 C 0.051 3.949 10 H 0.028 0.972 11 C -0.111 4.111 12 C -0.074 4.074 13 C -0.101 4.101 14 C 0.092 3.908 15 O -0.501 6.501 16 C -0.167 4.167 17 C -0.115 4.115 18 C -0.135 4.135 19 C -0.036 4.036 20 C -0.079 4.079 21 H 0.261 0.739 22 H 0.049 0.951 23 H 0.054 0.946 24 H 0.064 0.936 25 H 0.064 0.936 26 H 0.382 0.618 27 H 0.117 0.883 28 H 0.117 0.883 29 H 0.120 0.880 30 H 0.102 0.898 31 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.620 -9.429 -1.605 9.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.140 4.140 3 Si 0.719 3.281 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.553 4.553 8 H 0.074 0.926 9 C 0.032 3.968 10 H 0.046 0.954 11 C -0.149 4.149 12 C -0.111 4.111 13 C -0.101 4.101 14 C 0.048 3.952 15 O -0.310 6.310 16 C -0.185 4.185 17 C -0.133 4.133 18 C -0.153 4.153 19 C -0.036 4.036 20 C -0.116 4.116 21 H 0.071 0.929 22 H 0.068 0.932 23 H 0.073 0.927 24 H 0.083 0.917 25 H 0.082 0.918 26 H 0.237 0.763 27 H 0.135 0.865 28 H 0.135 0.865 29 H 0.138 0.862 30 H 0.120 0.880 31 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.422 -9.353 -2.108 9.889 hybrid contribution 0.005 0.873 0.337 0.936 sum -2.417 -8.480 -1.772 8.994 Atomic orbital electron populations 1.69867 1.05870 1.26577 1.50734 1.24988 0.94866 0.99077 0.95035 0.86674 0.79622 0.83177 0.78621 1.20301 1.21326 1.20292 1.21181 0.92945 0.90516 1.50642 0.92569 1.18641 0.92493 0.91896 0.93735 0.95407 1.21659 0.98528 0.94319 1.00361 1.20377 0.94315 0.99394 0.97014 1.20058 0.98698 0.91451 0.99942 1.18521 0.94065 0.85838 0.96788 1.84769 1.65357 1.45619 1.35254 1.21105 0.97310 0.98915 1.01182 1.20833 0.99876 0.92640 0.99968 1.21305 0.96996 0.97216 0.99798 1.20381 0.93618 0.96877 0.92771 1.20803 1.01297 0.89504 1.00005 0.92923 0.93208 0.92715 0.91725 0.91793 0.76347 0.86454 0.86496 0.86230 0.87964 0.92365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.00 11.43 55.43 0.63 -24.37 16 2 C 0.06 1.68 5.30 -17.82 -0.09 1.58 16 3 Si 0.89 21.02 29.54 -169.99 -5.02 16.00 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.51 -13.94 8.55 -34.44 -0.29 -14.23 16 8 H 0.06 1.50 7.75 -52.49 -0.41 1.09 16 9 C 0.05 1.25 2.13 -91.75 -0.20 1.06 16 10 H 0.03 0.75 8.10 -51.93 -0.42 0.33 16 11 C -0.11 -2.35 5.23 -26.70 -0.14 -2.49 16 12 C -0.07 -1.38 5.28 -28.05 -0.15 -1.53 16 13 C -0.10 -1.95 5.75 -104.47 -0.60 -2.55 16 14 C 0.09 1.57 6.66 -39.08 -0.26 1.31 16 15 O -0.50 -7.43 12.53 -19.42 -0.24 -7.67 16 16 C -0.17 -2.61 9.98 -39.53 -0.39 -3.01 16 17 C -0.12 -1.81 10.04 -39.71 -0.40 -2.21 16 18 C -0.14 -2.45 9.60 -39.42 -0.38 -2.83 16 19 C -0.04 -0.75 5.74 -104.63 -0.60 -1.35 16 20 C -0.08 -1.85 4.62 -28.05 -0.13 -1.98 16 21 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 22 H 0.05 1.05 8.10 -51.93 -0.42 0.63 16 23 H 0.05 1.12 8.13 -51.92 -0.42 0.69 16 24 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 25 H 0.06 1.11 7.76 -51.93 -0.40 0.71 16 26 H 0.38 3.87 9.06 45.56 0.41 4.28 16 27 H 0.12 1.55 8.06 -52.48 -0.42 1.13 16 28 H 0.12 1.48 8.06 -52.48 -0.42 1.06 16 29 H 0.12 2.02 8.05 -52.49 -0.42 1.60 16 30 H 0.10 2.62 6.33 -51.93 -0.33 2.30 16 31 H 0.06 1.39 8.11 -51.92 -0.42 0.97 16 LS Contribution 257.65 15.07 3.88 3.88 Total: -1.00 -29.08 257.65 -7.62 -36.70 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: -3.24 Total: 3.67 kcal Atomic # 6 Polarization: -24.58 SS G_CDS: -3.63 Total: -28.22 kcal Atomic # 7 Polarization: -25.00 SS G_CDS: 0.63 Total: -24.37 kcal Atomic # 8 Polarization: -7.43 SS G_CDS: -0.24 Total: -7.67 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -29.08 -7.62 -36.70 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108371433.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.117 kcal (2) G-P(sol) polarization free energy of solvation -29.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds