Wall clock time and date at job start Mon Mar 30 2020 02:32:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99347 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 H 1.08999 * 109.67419 * 299.20692 * 9 7 2 11 11 C 1.53320 * 109.67918 * 178.66075 * 9 7 2 12 12 C 1.52739 * 108.36530 * 170.42750 * 11 9 7 13 13 C 1.50630 * 110.57801 * 51.13726 * 12 11 9 14 14 C 1.39393 * 117.75591 * 162.50056 * 13 12 11 15 15 O 1.35899 * 119.78768 * 359.43721 * 14 13 12 16 16 C 1.38438 * 120.42538 * 179.41480 * 14 13 12 17 17 C 1.38168 * 119.70730 * 0.02789 * 16 14 13 18 18 C 1.37960 * 119.83715 * 0.12721 * 17 16 14 19 19 C 1.37571 * 122.58920 * 342.17201 * 13 12 11 20 20 C 1.50640 * 122.55715 * 0.71880 * 19 13 12 21 21 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 22 22 H 1.08997 * 109.68352 * 290.16132 * 11 9 7 23 23 H 1.09009 * 109.67991 * 50.71953 * 11 9 7 24 24 H 1.08993 * 109.25674 * 290.85549 * 12 11 9 25 25 H 1.09000 * 109.22594 * 171.39859 * 12 11 9 26 26 H 0.96704 * 114.00228 * 89.99914 * 15 14 13 27 27 H 1.08004 * 120.14186 * 180.02562 * 16 14 13 28 28 H 1.08004 * 120.08185 * 180.10762 * 17 16 14 29 29 H 1.07997 * 119.66705 * 180.02562 * 18 17 16 30 30 H 1.09004 * 109.25519 * 221.98822 * 20 19 13 31 31 H 1.09011 * 109.21741 * 102.55248 * 20 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 1 0.6299 -2.5684 0.8877 11 6 2.2427 -3.6680 -0.0372 12 6 1.4681 -4.9631 0.1985 13 6 0.2910 -5.0537 -0.7370 14 6 -0.2962 -6.3042 -0.9224 15 8 0.2067 -7.3887 -0.2759 16 6 -1.3885 -6.4486 -1.7605 17 6 -1.8983 -5.3450 -2.4171 18 6 -1.3147 -4.1081 -2.2357 19 6 -0.2171 -3.9586 -1.3968 20 6 0.3711 -2.5795 -1.2511 21 1 -0.4850 0.8401 -0.0004 22 1 2.7345 -3.7057 -1.0092 23 1 2.9883 -3.5382 0.7474 24 1 1.1114 -4.9863 1.2282 25 1 2.1291 -5.8128 0.0278 26 1 -0.1903 -7.5487 0.5913 27 1 -1.8401 -7.4196 -1.9005 28 1 -2.7514 -5.4503 -3.0711 29 1 -1.7157 -3.2472 -2.7500 30 1 -0.4359 -1.8514 -1.1688 31 1 0.9725 -2.3512 -2.1312 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000108371433.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:53 Heat of formation + Delta-G solvation = -59.274575 kcal Electronic energy + Delta-G solvation = -14494.049935 eV Core-core repulsion = 12124.582215 eV Total energy + Delta-G solvation = -2369.467720 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.12517 -38.25847 -36.82797 -34.52093 -32.15074 -31.21318 -29.16361 -26.93224 -24.25994 -23.00503 -22.82789 -20.16771 -18.79994 -18.39280 -16.96218 -16.55683 -16.48182 -16.17075 -15.09171 -14.71133 -14.46256 -14.31527 -13.74862 -13.44785 -13.18910 -12.97611 -12.78084 -12.54977 -12.39312 -12.22561 -12.09048 -11.53008 -11.33437 -10.86614 -10.64782 -10.46799 -9.38849 -9.34466 -8.09560 -6.23462 0.38828 0.51330 1.42008 1.43032 1.50770 2.43311 2.77199 3.17461 3.40757 3.92344 4.02050 4.23556 4.33242 4.40430 4.59050 4.64936 4.73913 4.94097 4.99318 5.09999 5.16883 5.24947 5.29250 5.31535 5.53833 5.57095 5.63639 5.93056 5.94495 6.02799 6.13108 6.37368 6.87418 6.92334 7.44801 8.95320 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.047123 B = 0.008166 C = 0.007194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 594.044081 B = 3428.147165 C = 3890.969831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.014 3.986 3 Si 0.954 3.046 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.271 1.271 7 C -0.538 4.538 8 H 0.054 0.946 9 C 0.048 3.952 10 H -0.004 1.004 11 C -0.104 4.104 12 C -0.066 4.066 13 C -0.123 4.123 14 C 0.097 3.903 15 O -0.502 6.502 16 C -0.158 4.158 17 C -0.104 4.104 18 C -0.149 4.149 19 C -0.068 4.068 20 C -0.064 4.064 21 H 0.261 0.739 22 H 0.045 0.955 23 H 0.057 0.943 24 H 0.071 0.929 25 H 0.081 0.919 26 H 0.405 0.595 27 H 0.152 0.848 28 H 0.154 0.846 29 H 0.121 0.879 30 H 0.072 0.928 31 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.003 -11.147 -1.988 11.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.185 4.185 3 Si 0.779 3.221 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.196 1.196 7 C -0.576 4.576 8 H 0.072 0.928 9 C 0.029 3.971 10 H 0.014 0.986 11 C -0.142 4.142 12 C -0.103 4.103 13 C -0.123 4.123 14 C 0.052 3.948 15 O -0.315 6.315 16 C -0.176 4.176 17 C -0.121 4.121 18 C -0.167 4.167 19 C -0.068 4.068 20 C -0.102 4.102 21 H 0.070 0.930 22 H 0.064 0.936 23 H 0.076 0.924 24 H 0.089 0.911 25 H 0.100 0.900 26 H 0.263 0.737 27 H 0.170 0.830 28 H 0.172 0.828 29 H 0.139 0.861 30 H 0.090 0.910 31 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -2.802 -11.087 -2.474 11.700 hybrid contribution 0.086 1.321 0.470 1.405 sum -2.717 -9.766 -2.004 10.333 Atomic orbital electron populations 1.70014 1.07137 1.27256 1.51180 1.25759 0.95705 1.02374 0.94667 0.85677 0.78446 0.79104 0.78826 1.19718 1.20879 1.19641 1.21563 0.93116 0.92062 1.50886 0.92808 1.18584 0.92936 0.92665 0.92874 0.98606 1.21534 0.97981 0.94496 1.00197 1.20290 0.94341 0.98200 0.97455 1.20169 0.99407 0.92345 1.00422 1.18528 0.93964 0.85319 0.96959 1.84711 1.65763 1.44240 1.36737 1.21510 0.96256 1.00329 0.99513 1.21204 1.00163 0.91303 0.99471 1.21410 0.96705 0.98811 0.99770 1.20169 0.95558 0.95569 0.95518 1.20425 0.99824 0.91376 0.98542 0.92960 0.93644 0.92432 0.91097 0.90034 0.73687 0.83025 0.82800 0.86136 0.91014 0.94207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.15 11.43 21.45 0.25 -52.91 16 2 C 0.01 0.77 5.30 84.66 0.45 1.22 16 3 Si 0.95 43.79 29.54 68.60 2.03 45.81 16 4 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 5 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 6 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 7 C -0.54 -30.14 8.55 25.60 0.22 -29.92 16 8 H 0.05 2.95 7.75 -2.91 -0.02 2.92 16 9 C 0.05 2.47 2.13 -11.52 -0.02 2.44 16 10 H 0.00 -0.24 8.10 -2.39 -0.02 -0.26 16 11 C -0.10 -4.49 5.23 30.61 0.16 -4.33 16 12 C -0.07 -2.41 5.28 29.74 0.16 -2.26 16 13 C -0.12 -4.64 5.75 -19.77 -0.11 -4.75 16 14 C 0.10 3.03 6.66 22.60 0.15 3.18 16 15 O -0.50 -13.05 12.53 -92.41 -1.16 -14.21 16 16 C -0.16 -4.31 9.98 22.30 0.22 -4.09 16 17 C -0.10 -2.92 10.04 22.19 0.22 -2.70 16 18 C -0.15 -5.30 9.60 22.38 0.21 -5.08 16 19 C -0.07 -2.83 5.74 -19.87 -0.11 -2.95 16 20 C -0.06 -3.17 4.62 29.74 0.14 -3.03 16 21 H 0.26 14.42 8.31 -92.70 -0.77 13.65 16 22 H 0.04 1.95 8.10 -2.39 -0.02 1.93 16 23 H 0.06 2.38 8.13 -2.38 -0.02 2.36 16 24 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 25 H 0.08 2.68 7.76 -2.39 -0.02 2.66 16 26 H 0.40 6.64 9.06 -74.05 -0.67 5.97 16 27 H 0.15 3.14 8.06 -2.91 -0.02 3.11 16 28 H 0.15 3.18 8.06 -2.91 -0.02 3.16 16 29 H 0.12 4.12 8.05 -2.91 -0.02 4.10 16 30 H 0.07 3.91 6.33 -2.39 -0.02 3.90 16 31 H 0.04 2.02 8.11 -2.38 -0.02 2.00 16 Total: -1.00 -63.75 257.65 3.25 -60.50 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: 0.46 Total: 13.07 kcal Atomic # 6 Polarization: -53.95 SS G_CDS: 1.68 Total: -52.27 kcal Atomic # 7 Polarization: -53.15 SS G_CDS: 0.25 Total: -52.91 kcal Atomic # 8 Polarization: -13.05 SS G_CDS: -1.16 Total: -14.21 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.81 kcal Total: -63.75 3.25 -60.50 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108371433.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.229 kcal (2) G-P(sol) polarization free energy of solvation -63.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds