Wall clock time and date at job start Mon Mar 30 2020 02:32:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86803 * 120.00060 * 2 1 4 4 H 1.48495 * 109.47144 * 239.99982 * 3 2 1 5 5 H 1.48499 * 109.46919 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46766 * 119.99840 * 3 2 1 7 7 C 1.37879 * 120.00024 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99913 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99981 * 0.02562 * 7 2 1 10 10 H 1.08997 * 109.68030 * 60.52169 * 9 7 2 11 11 C 1.53326 * 109.71356 * 181.05870 * 9 7 2 12 12 C 1.52732 * 108.37833 * 189.64620 * 11 9 7 13 13 C 1.50646 * 110.59044 * 308.89520 * 12 11 9 14 14 C 1.38830 * 117.70192 * 197.77703 * 13 12 11 15 15 C 1.38425 * 120.50118 * 180.65437 * 14 13 12 16 16 O 1.35905 * 120.17305 * 179.72611 * 15 14 13 17 17 C 1.38761 * 119.65439 * 359.44542 * 15 14 13 18 18 C 1.37832 * 119.70966 * 0.15355 * 17 15 14 19 19 C 1.37704 * 122.56191 * 17.72022 * 13 12 11 20 20 C 1.50652 * 122.54428 * 359.35897 * 19 13 12 21 21 H 0.97001 * 119.99971 * 359.97438 * 1 2 3 22 22 H 1.09001 * 109.68596 * 309.36574 * 11 9 7 23 23 H 1.08996 * 109.68675 * 69.88207 * 11 9 7 24 24 H 1.08997 * 109.25424 * 69.18845 * 12 11 9 25 25 H 1.09003 * 109.25452 * 188.61576 * 12 11 9 26 26 H 1.07995 * 119.75199 * 0.40154 * 14 13 12 27 27 H 0.96705 * 113.99576 * 269.72016 * 16 15 14 28 28 H 1.07999 * 120.14062 * 180.12975 * 17 15 14 29 29 H 1.08002 * 119.68483 * 180.02562 * 18 17 15 30 30 H 1.09001 * 109.25498 * 138.01954 * 20 19 13 31 31 H 1.08995 * 109.25427 * 257.44799 * 20 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1028 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0017 10 1 0.6304 -2.5639 -0.8954 11 6 2.2422 -3.6686 0.0246 12 6 1.4676 -4.9620 -0.2200 13 6 0.2884 -5.0577 0.7127 14 6 -0.2925 -6.3058 0.8927 15 6 -1.3872 -6.4576 1.7261 16 8 -1.9541 -7.6815 1.8931 17 6 -1.8992 -5.3548 2.3948 18 6 -1.3153 -4.1185 2.2205 19 6 -0.2195 -3.9654 1.3798 20 6 0.3707 -2.5860 1.2433 21 1 -0.4850 0.8401 0.0004 22 1 2.9891 -3.5346 -0.7579 23 1 2.7330 -3.7122 0.9968 24 1 1.1131 -4.9793 -1.2505 25 1 2.1276 -5.8133 -0.0532 26 1 0.1102 -7.1639 0.3753 27 1 -2.6613 -7.8766 1.2631 28 1 -2.7518 -5.4647 3.0486 29 1 -1.7139 -3.2605 2.7415 30 1 -0.4353 -1.8563 1.1651 31 1 0.9719 -2.3634 2.1248 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000108371452.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:56 Heat of formation + Delta-G solvation = -42.754481 kcal Electronic energy + Delta-G solvation = -14343.836497 eV Core-core repulsion = 11975.085142 eV Total energy + Delta-G solvation = -2368.751355 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.63565 -37.35189 -34.78825 -32.68604 -31.19939 -29.13428 -27.84878 -24.78029 -22.70968 -21.63195 -21.33307 -18.76691 -17.45436 -16.41998 -15.38641 -15.14004 -14.67736 -14.48918 -13.71300 -13.35066 -12.92762 -12.63478 -12.16689 -11.90962 -11.77777 -11.48458 -10.96076 -10.79141 -10.65190 -10.39253 -10.30739 -10.12879 -9.55583 -9.06258 -8.79613 -8.43444 -8.28843 -7.71200 -6.01382 -4.07285 1.75970 1.79963 3.31050 3.35958 3.38536 4.07316 4.42259 4.54643 5.25622 5.30312 5.35543 5.60330 5.82167 5.86275 5.93237 6.04849 6.20926 6.41305 6.52249 6.65796 6.75579 6.80634 6.87250 6.97677 7.02054 7.12054 7.33145 7.55638 7.72080 7.91627 7.95955 8.06488 8.42267 8.96527 9.57856 11.05130 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.053714 B = 0.007444 C = 0.006731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 521.155216 B = 3760.617068 C = 4158.817024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.062 3.938 3 Si 0.891 3.109 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.515 4.515 8 H 0.056 0.944 9 C 0.051 3.949 10 H 0.028 0.972 11 C -0.112 4.112 12 C -0.079 4.079 13 C -0.064 4.064 14 C -0.149 4.149 15 C 0.075 3.925 16 O -0.504 6.504 17 C -0.151 4.151 18 C -0.112 4.112 19 C -0.055 4.055 20 C -0.078 4.078 21 H 0.261 0.739 22 H 0.055 0.945 23 H 0.050 0.950 24 H 0.069 0.931 25 H 0.059 0.941 26 H 0.118 0.882 27 H 0.381 0.619 28 H 0.118 0.882 29 H 0.122 0.878 30 H 0.101 0.899 31 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.680 -9.354 1.583 9.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.139 4.139 3 Si 0.719 3.281 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.553 4.553 8 H 0.074 0.926 9 C 0.032 3.968 10 H 0.047 0.953 11 C -0.149 4.149 12 C -0.116 4.116 13 C -0.064 4.064 14 C -0.167 4.167 15 C 0.031 3.969 16 O -0.313 6.313 17 C -0.170 4.170 18 C -0.131 4.131 19 C -0.055 4.055 20 C -0.115 4.115 21 H 0.071 0.929 22 H 0.073 0.927 23 H 0.069 0.931 24 H 0.087 0.913 25 H 0.078 0.922 26 H 0.136 0.864 27 H 0.235 0.765 28 H 0.136 0.864 29 H 0.140 0.860 30 H 0.119 0.881 31 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.427 -9.273 2.048 9.802 hybrid contribution -0.057 0.860 -0.295 0.911 sum -2.484 -8.413 1.753 8.946 Atomic orbital electron populations 1.69864 1.05880 1.26587 1.50706 1.24982 0.94854 0.99072 0.95029 0.86677 0.79624 0.83197 0.78616 1.20294 1.21336 1.20299 1.21169 0.92925 0.90510 1.50683 0.92581 1.18643 0.92485 0.91836 0.93822 0.95349 1.21660 0.98541 0.94317 1.00401 1.20528 0.94146 0.99343 0.97568 1.19644 0.97233 0.91724 0.97838 1.21346 0.97956 0.97471 0.99935 1.18248 0.95490 0.84192 0.98962 1.84818 1.54797 1.32341 1.59331 1.21226 1.01320 0.92482 1.01962 1.21171 0.96409 0.96534 0.98939 1.20503 0.94113 0.97308 0.93601 1.20782 1.01208 0.89600 0.99954 0.92919 0.92673 0.93144 0.91258 0.92249 0.86406 0.76508 0.86358 0.85995 0.88084 0.92445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.92 11.43 55.43 0.63 -24.29 16 2 C 0.06 1.68 5.31 -17.82 -0.09 1.58 16 3 Si 0.89 20.92 29.54 -169.99 -5.02 15.90 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.51 -13.82 8.55 -34.44 -0.29 -14.11 16 8 H 0.06 1.48 7.75 -52.48 -0.41 1.08 16 9 C 0.05 1.23 2.12 -91.74 -0.19 1.04 16 10 H 0.03 0.76 8.10 -51.93 -0.42 0.34 16 11 C -0.11 -2.29 5.23 -26.70 -0.14 -2.43 16 12 C -0.08 -1.41 5.67 -28.05 -0.16 -1.57 16 13 C -0.06 -1.21 5.74 -104.62 -0.60 -1.81 16 14 C -0.15 -2.50 9.55 -39.29 -0.38 -2.87 16 15 C 0.07 1.22 6.70 -39.32 -0.26 0.95 16 16 O -0.50 -7.00 13.51 -19.44 -0.26 -7.26 16 17 C -0.15 -2.48 9.99 -39.54 -0.40 -2.87 16 18 C -0.11 -2.04 9.60 -39.46 -0.38 -2.42 16 19 C -0.06 -1.12 5.74 -104.57 -0.60 -1.72 16 20 C -0.08 -1.82 4.62 -28.05 -0.13 -1.95 16 21 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 22 H 0.05 1.09 8.12 -51.93 -0.42 0.67 16 23 H 0.05 1.03 8.10 -51.93 -0.42 0.61 16 24 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 25 H 0.06 0.92 8.12 -51.93 -0.42 0.50 16 26 H 0.12 1.74 8.05 -52.49 -0.42 1.31 16 27 H 0.38 3.38 9.06 45.56 0.41 3.79 16 28 H 0.12 1.66 8.06 -52.49 -0.42 1.23 16 29 H 0.12 2.07 8.05 -52.49 -0.42 1.64 16 30 H 0.10 2.58 6.34 -51.93 -0.33 2.25 16 31 H 0.06 1.36 8.11 -51.93 -0.42 0.94 16 LS Contribution 258.94 15.07 3.90 3.90 Total: -1.00 -28.95 258.94 -7.63 -36.58 By element: Atomic # 1 Polarization: 6.61 SS G_CDS: -3.25 Total: 3.35 kcal Atomic # 6 Polarization: -24.56 SS G_CDS: -3.63 Total: -28.19 kcal Atomic # 7 Polarization: -24.92 SS G_CDS: 0.63 Total: -24.29 kcal Atomic # 8 Polarization: -7.00 SS G_CDS: -0.26 Total: -7.26 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -28.95 -7.63 -36.58 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108371452.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.173 kcal (2) G-P(sol) polarization free energy of solvation -28.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds