Wall clock time and date at job start Mon Mar 30 2020 02:32:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86803 * 120.00060 * 2 1 4 4 H 1.48495 * 109.47144 * 239.99982 * 3 2 1 5 5 H 1.48499 * 109.46919 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46766 * 119.99840 * 3 2 1 7 7 C 1.37879 * 120.00024 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99913 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99981 * 0.02562 * 7 2 1 10 10 H 1.08997 * 109.68030 * 60.52169 * 9 7 2 11 11 C 1.53326 * 109.71356 * 181.05870 * 9 7 2 12 12 C 1.52732 * 108.37833 * 189.64620 * 11 9 7 13 13 C 1.50646 * 110.59044 * 308.89520 * 12 11 9 14 14 C 1.38830 * 117.70192 * 197.77703 * 13 12 11 15 15 C 1.38425 * 120.50118 * 180.65437 * 14 13 12 16 16 O 1.35905 * 120.17305 * 179.72611 * 15 14 13 17 17 C 1.38761 * 119.65439 * 359.44542 * 15 14 13 18 18 C 1.37832 * 119.70966 * 0.15355 * 17 15 14 19 19 C 1.37704 * 122.56191 * 17.72022 * 13 12 11 20 20 C 1.50652 * 122.54428 * 359.35897 * 19 13 12 21 21 H 0.97001 * 119.99971 * 359.97438 * 1 2 3 22 22 H 1.09001 * 109.68596 * 309.36574 * 11 9 7 23 23 H 1.08996 * 109.68675 * 69.88207 * 11 9 7 24 24 H 1.08997 * 109.25424 * 69.18845 * 12 11 9 25 25 H 1.09003 * 109.25452 * 188.61576 * 12 11 9 26 26 H 1.07995 * 119.75199 * 0.40154 * 14 13 12 27 27 H 0.96705 * 113.99576 * 269.72016 * 16 15 14 28 28 H 1.07999 * 120.14062 * 180.12975 * 17 15 14 29 29 H 1.08002 * 119.68483 * 180.02562 * 18 17 15 30 30 H 1.09001 * 109.25498 * 138.01954 * 20 19 13 31 31 H 1.08995 * 109.25427 * 257.44799 * 20 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1028 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0017 10 1 0.6304 -2.5639 -0.8954 11 6 2.2422 -3.6686 0.0246 12 6 1.4676 -4.9620 -0.2200 13 6 0.2884 -5.0577 0.7127 14 6 -0.2925 -6.3058 0.8927 15 6 -1.3872 -6.4576 1.7261 16 8 -1.9541 -7.6815 1.8931 17 6 -1.8992 -5.3548 2.3948 18 6 -1.3153 -4.1185 2.2205 19 6 -0.2195 -3.9654 1.3798 20 6 0.3707 -2.5860 1.2433 21 1 -0.4850 0.8401 0.0004 22 1 2.9891 -3.5346 -0.7579 23 1 2.7330 -3.7122 0.9968 24 1 1.1131 -4.9793 -1.2505 25 1 2.1276 -5.8133 -0.0532 26 1 0.1102 -7.1639 0.3753 27 1 -2.6613 -7.8766 1.2631 28 1 -2.7518 -5.4647 3.0486 29 1 -1.7139 -3.2605 2.7415 30 1 -0.4353 -1.8563 1.1651 31 1 0.9719 -2.3634 2.1248 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000108371452.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:55 Heat of formation + Delta-G solvation = -60.110457 kcal Electronic energy + Delta-G solvation = -14344.589109 eV Core-core repulsion = 11975.085142 eV Total energy + Delta-G solvation = -2369.503967 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.01788 -38.69732 -36.35488 -34.44915 -32.84473 -30.65026 -29.43678 -26.65995 -24.25945 -23.07641 -22.89747 -20.33844 -18.73453 -18.40206 -16.88984 -16.54505 -16.34792 -15.97723 -15.22557 -14.85112 -14.51144 -14.28574 -13.85902 -13.45210 -13.32092 -12.91946 -12.80381 -12.56252 -12.35262 -12.12083 -11.97544 -11.58704 -11.24892 -10.83958 -10.68585 -10.47267 -9.64343 -9.16584 -8.08069 -6.21923 0.40396 0.45135 1.42956 1.43841 1.51478 2.44345 2.73969 3.19102 3.35757 3.92077 4.03752 4.22433 4.37918 4.42255 4.45893 4.61695 4.77199 4.97633 5.01829 5.11360 5.17327 5.23059 5.30321 5.33100 5.51160 5.54352 5.62880 5.92332 5.97152 6.02477 6.15762 6.39057 6.89563 6.92743 7.46468 8.96642 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.053714 B = 0.007444 C = 0.006731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 521.155216 B = 3760.617068 C = 4158.817024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.013 3.987 3 Si 0.953 3.047 4 H -0.271 1.271 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.536 4.536 8 H 0.054 0.946 9 C 0.046 3.954 10 H -0.004 1.004 11 C -0.105 4.105 12 C -0.074 4.074 13 C -0.074 4.074 14 C -0.149 4.149 15 C 0.090 3.910 16 O -0.504 6.504 17 C -0.150 4.150 18 C -0.120 4.120 19 C -0.090 4.090 20 C -0.063 4.063 21 H 0.261 0.739 22 H 0.058 0.942 23 H 0.048 0.952 24 H 0.075 0.925 25 H 0.091 0.909 26 H 0.144 0.856 27 H 0.407 0.593 28 H 0.145 0.855 29 H 0.123 0.877 30 H 0.069 0.931 31 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.696 -11.145 1.765 11.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.185 4.185 3 Si 0.779 3.221 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.574 4.574 8 H 0.073 0.927 9 C 0.027 3.973 10 H 0.014 0.986 11 C -0.143 4.143 12 C -0.111 4.111 13 C -0.074 4.074 14 C -0.167 4.167 15 C 0.045 3.955 16 O -0.317 6.317 17 C -0.168 4.168 18 C -0.138 4.138 19 C -0.090 4.090 20 C -0.100 4.100 21 H 0.070 0.930 22 H 0.077 0.923 23 H 0.066 0.934 24 H 0.093 0.907 25 H 0.109 0.891 26 H 0.162 0.838 27 H 0.266 0.734 28 H 0.163 0.837 29 H 0.141 0.859 30 H 0.087 0.913 31 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -2.451 -11.082 2.217 11.565 hybrid contribution -0.127 1.319 -0.343 1.369 sum -2.578 -9.763 1.874 10.270 Atomic orbital electron populations 1.70014 1.07169 1.27198 1.51324 1.25752 0.95666 1.02367 0.94750 0.85689 0.78435 0.79174 0.78829 1.19623 1.21041 1.19711 1.21567 0.93130 0.92051 1.50670 0.92731 1.18606 0.93017 0.92767 0.92869 0.98571 1.21535 0.97935 0.94397 1.00417 1.20506 0.94151 0.98658 0.97762 1.19769 0.97686 0.92159 0.97815 1.21537 0.97952 0.97211 1.00043 1.18313 0.94909 0.84790 0.97450 1.84755 1.55790 1.30752 1.60420 1.21460 1.01727 0.91620 1.02040 1.21230 0.96033 0.97786 0.98728 1.20307 0.96069 0.96166 0.96488 1.20398 0.99722 0.91331 0.98576 0.93030 0.92288 0.93361 0.90703 0.89070 0.83807 0.73429 0.83744 0.85904 0.91299 0.94250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.10 11.43 21.45 0.25 -52.85 16 2 C 0.01 0.74 5.31 84.66 0.45 1.19 16 3 Si 0.95 43.55 29.54 68.60 2.03 45.58 16 4 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 5 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 6 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 7 C -0.54 -29.64 8.55 25.60 0.22 -29.42 16 8 H 0.05 2.94 7.75 -2.91 -0.02 2.92 16 9 C 0.05 2.32 2.12 -11.52 -0.02 2.30 16 10 H 0.00 -0.22 8.10 -2.39 -0.02 -0.24 16 11 C -0.11 -4.33 5.23 30.61 0.16 -4.17 16 12 C -0.07 -2.53 5.67 29.74 0.17 -2.36 16 13 C -0.07 -2.70 5.74 -19.87 -0.11 -2.81 16 14 C -0.15 -4.55 9.55 22.46 0.21 -4.33 16 15 C 0.09 2.60 6.70 22.44 0.15 2.75 16 16 O -0.50 -11.77 13.51 -92.48 -1.25 -13.02 16 17 C -0.15 -4.55 9.99 22.30 0.22 -4.32 16 18 C -0.12 -4.32 9.60 22.35 0.21 -4.10 16 19 C -0.09 -3.71 5.74 -19.83 -0.11 -3.82 16 20 C -0.06 -3.06 4.62 29.74 0.14 -2.92 16 21 H 0.26 14.39 8.31 -92.71 -0.77 13.62 16 22 H 0.06 2.33 8.12 -2.39 -0.02 2.31 16 23 H 0.05 1.97 8.10 -2.39 -0.02 1.95 16 24 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 25 H 0.09 2.54 8.12 -2.39 -0.02 2.52 16 26 H 0.14 3.60 8.05 -2.91 -0.02 3.58 16 27 H 0.41 5.29 9.06 -74.05 -0.67 4.61 16 28 H 0.14 3.56 8.06 -2.91 -0.02 3.54 16 29 H 0.12 4.26 8.05 -2.91 -0.02 4.23 16 30 H 0.07 3.74 6.34 -2.39 -0.02 3.72 16 31 H 0.04 1.97 8.11 -2.39 -0.02 1.95 16 Total: -1.00 -63.12 258.94 3.16 -59.96 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: 0.45 Total: 12.36 kcal Atomic # 6 Polarization: -53.71 SS G_CDS: 1.68 Total: -52.02 kcal Atomic # 7 Polarization: -53.10 SS G_CDS: 0.25 Total: -52.85 kcal Atomic # 8 Polarization: -11.77 SS G_CDS: -1.25 Total: -13.02 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Total: -63.12 3.16 -59.96 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108371452.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.147 kcal (2) G-P(sol) polarization free energy of solvation -63.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds