Wall clock time and date at job start Mon Mar 30 2020 02:32:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86801 * 119.99905 * 2 1 4 4 H 1.48491 * 109.47148 * 274.98970 * 3 2 1 5 5 H 1.48506 * 109.46926 * 34.99469 * 3 2 1 6 6 H 1.48500 * 109.46822 * 154.98974 * 3 2 1 7 7 C 1.37872 * 119.99990 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00198 * 189.46476 * 7 2 1 9 9 C 1.50706 * 119.99881 * 9.46273 * 7 2 1 10 10 H 1.08998 * 109.70943 * 305.92901 * 9 7 2 11 11 C 1.53329 * 109.67857 * 185.39952 * 9 7 2 12 12 C 1.52735 * 108.38011 * 170.39324 * 11 9 7 13 13 C 1.50644 * 110.59744 * 51.10369 * 12 11 9 14 14 C 1.38823 * 117.70280 * 162.26843 * 13 12 11 15 15 C 1.38429 * 120.50401 * 179.76431 * 14 13 12 16 16 O 1.35895 * 120.17195 * 179.97438 * 15 14 13 17 17 C 1.38765 * 119.65090 * 359.95594 * 15 14 13 18 18 C 1.37827 * 119.71291 * 0.13059 * 17 15 14 19 19 C 1.37716 * 122.56071 * 342.22248 * 13 12 11 20 20 C 1.50657 * 122.53712 * 0.73990 * 19 13 12 21 21 H 0.97000 * 119.99728 * 359.97438 * 1 2 3 22 22 H 1.08997 * 109.68458 * 50.66654 * 11 9 7 23 23 H 1.09002 * 109.67943 * 290.11051 * 11 9 7 24 24 H 1.08995 * 109.25118 * 171.39375 * 12 11 9 25 25 H 1.08997 * 109.24789 * 290.85504 * 12 11 9 26 26 H 1.07994 * 119.75234 * 359.73753 * 14 13 12 27 27 H 0.96701 * 114.00513 * 90.00190 * 16 15 14 28 28 H 1.07999 * 120.13918 * 180.09777 * 17 15 14 29 29 H 1.08007 * 119.68722 * 180.02562 * 18 17 15 30 30 H 1.09002 * 109.24960 * 102.47373 * 20 19 13 31 31 H 1.08994 * 109.25064 * 221.90268 * 20 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.3912 2.1073 -1.3947 5 1 1.5033 2.6199 0.8030 6 1 3.5955 1.4120 0.5919 7 6 2.0046 -1.1940 -0.0005 8 1 3.0735 -1.2005 0.1533 9 6 1.2664 -2.4902 -0.2157 10 1 0.4501 -2.5719 0.5020 11 6 2.2304 -3.6691 -0.0376 12 6 1.4146 -4.9602 -0.0220 13 6 0.4923 -5.0187 -1.2116 14 6 -0.0344 -6.2550 -1.5598 15 6 -0.8920 -6.3746 -2.6398 16 8 -1.4033 -7.5883 -2.9749 17 6 -1.2272 -5.2485 -3.3781 18 6 -0.7014 -4.0226 -3.0312 19 6 0.1619 -3.9034 -1.9489 20 6 0.7085 -2.5346 -1.6367 21 1 -0.4850 0.8401 0.0004 22 1 2.7692 -3.5638 0.9041 23 1 2.9388 -3.6924 -0.8657 24 1 2.0920 -5.8137 -0.0501 25 1 0.8234 -5.0007 0.8928 26 1 0.2272 -7.1304 -0.9840 27 1 -2.2415 -7.7958 -2.5398 28 1 -1.8969 -5.3324 -4.2213 29 1 -0.9629 -3.1463 -3.6059 30 1 1.5039 -2.2957 -2.3427 31 1 -0.0896 -1.7985 -1.7327 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000108371455.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:58 Heat of formation + Delta-G solvation = -43.886419 kcal Electronic energy + Delta-G solvation = -14324.026919 eV Core-core repulsion = 11955.226479 eV Total energy + Delta-G solvation = -2368.800440 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.66636 -37.37334 -34.79212 -32.66332 -31.28189 -29.14554 -27.90412 -24.76360 -22.74495 -21.67834 -21.35015 -18.79000 -17.47676 -16.42751 -15.40991 -15.18183 -14.66708 -14.50329 -13.74104 -13.37835 -12.94567 -12.66330 -12.17047 -11.93363 -11.79058 -11.49514 -11.03486 -10.85525 -10.63759 -10.41915 -10.35122 -10.15544 -9.53933 -9.03649 -8.85392 -8.41055 -8.30901 -7.75276 -6.04048 -4.05835 1.72440 1.77113 3.29557 3.37318 3.40222 4.04100 4.42987 4.52268 5.22839 5.29287 5.32833 5.57051 5.80357 5.82328 5.92041 6.02024 6.19092 6.37920 6.50234 6.63939 6.72528 6.76522 6.84321 6.94184 6.96157 7.06708 7.29508 7.51226 7.68285 7.88968 7.92751 7.99777 8.42418 8.98753 9.58154 11.05136 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.052642 B = 0.007403 C = 0.006759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 531.770839 B = 3781.134817 C = 4141.433871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.064 3.936 3 Si 0.886 3.114 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.516 4.516 8 H 0.057 0.943 9 C 0.048 3.952 10 H 0.036 0.964 11 C -0.111 4.111 12 C -0.080 4.080 13 C -0.061 4.061 14 C -0.149 4.149 15 C 0.077 3.923 16 O -0.504 6.504 17 C -0.152 4.152 18 C -0.112 4.112 19 C -0.057 4.057 20 C -0.074 4.074 21 H 0.260 0.740 22 H 0.056 0.944 23 H 0.049 0.951 24 H 0.059 0.941 25 H 0.070 0.930 26 H 0.119 0.881 27 H 0.381 0.619 28 H 0.119 0.881 29 H 0.122 0.878 30 H 0.059 0.941 31 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.129 -9.457 -3.255 10.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.138 4.138 3 Si 0.714 3.286 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.554 4.554 8 H 0.075 0.925 9 C 0.030 3.970 10 H 0.055 0.945 11 C -0.149 4.149 12 C -0.117 4.117 13 C -0.061 4.061 14 C -0.167 4.167 15 C 0.033 3.967 16 O -0.313 6.313 17 C -0.170 4.170 18 C -0.131 4.131 19 C -0.057 4.057 20 C -0.111 4.111 21 H 0.070 0.930 22 H 0.075 0.925 23 H 0.068 0.932 24 H 0.078 0.922 25 H 0.088 0.912 26 H 0.137 0.863 27 H 0.235 0.765 28 H 0.137 0.863 29 H 0.140 0.860 30 H 0.078 0.922 31 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -1.775 -9.373 -3.604 10.198 hybrid contribution -0.153 0.898 0.137 0.922 sum -1.928 -8.475 -3.467 9.357 Atomic orbital electron populations 1.69973 1.05927 1.26538 1.50227 1.24982 0.94763 0.99070 0.94966 0.86669 0.80094 0.83810 0.77991 1.20716 1.21339 1.19870 1.21170 0.94115 0.90859 1.49279 0.92511 1.18668 0.94249 0.91909 0.92175 0.94540 1.21661 0.98315 0.94289 1.00612 1.20542 0.96654 0.99415 0.95043 1.19642 0.97716 0.91672 0.97107 1.21357 1.00344 0.97666 0.97357 1.18256 0.98472 0.84297 0.95674 1.84814 1.42048 1.33490 1.70926 1.21222 1.02370 0.92342 1.01074 1.21161 0.97673 0.96750 0.97474 1.20421 0.94947 0.97059 0.93234 1.20729 1.00319 0.89785 1.00313 0.93011 0.92531 0.93230 0.92212 0.91161 0.86331 0.76453 0.86319 0.86041 0.92243 0.89817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.10 12.31 55.43 0.68 -24.42 16 2 C 0.06 1.74 5.26 -17.82 -0.09 1.65 16 3 Si 0.89 20.92 29.55 -169.99 -5.02 15.90 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.52 -13.85 8.46 -34.44 -0.29 -14.14 16 8 H 0.06 1.51 7.77 -52.49 -0.41 1.10 16 9 C 0.05 1.18 1.98 -91.74 -0.18 1.00 16 10 H 0.04 0.98 8.04 -51.93 -0.42 0.57 16 11 C -0.11 -2.27 5.23 -26.70 -0.14 -2.41 16 12 C -0.08 -1.41 5.67 -28.05 -0.16 -1.57 16 13 C -0.06 -1.14 5.74 -104.62 -0.60 -1.74 16 14 C -0.15 -2.47 9.55 -39.29 -0.38 -2.85 16 15 C 0.08 1.23 6.70 -39.32 -0.26 0.97 16 16 O -0.50 -6.91 13.51 -19.41 -0.26 -7.17 16 17 C -0.15 -2.44 9.99 -39.54 -0.40 -2.84 16 18 C -0.11 -2.01 9.60 -39.47 -0.38 -2.39 16 19 C -0.06 -1.13 5.74 -104.57 -0.60 -1.73 16 20 C -0.07 -1.69 4.74 -28.04 -0.13 -1.83 16 21 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 22 H 0.06 1.13 8.12 -51.93 -0.42 0.70 16 23 H 0.05 1.00 8.10 -51.93 -0.42 0.58 16 24 H 0.06 0.92 8.12 -51.93 -0.42 0.50 16 25 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 26 H 0.12 1.73 8.05 -52.49 -0.42 1.30 16 27 H 0.38 3.32 9.06 45.56 0.41 3.73 16 28 H 0.12 1.63 8.06 -52.49 -0.42 1.21 16 29 H 0.12 2.00 8.05 -52.48 -0.42 1.58 16 30 H 0.06 1.36 8.11 -51.93 -0.42 0.94 16 31 H 0.08 2.09 7.19 -51.93 -0.37 1.72 16 LS Contribution 260.47 15.07 3.93 3.93 Total: -1.00 -29.22 260.47 -7.58 -36.80 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: -3.30 Total: 2.85 kcal Atomic # 6 Polarization: -24.28 SS G_CDS: -3.61 Total: -27.89 kcal Atomic # 7 Polarization: -25.10 SS G_CDS: 0.68 Total: -24.42 kcal Atomic # 8 Polarization: -6.91 SS G_CDS: -0.26 Total: -7.17 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -29.22 -7.58 -36.80 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108371455.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.085 kcal (2) G-P(sol) polarization free energy of solvation -29.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds