Wall clock time and date at job start Mon Mar 30 2020 02:33:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 120.00009 * 2 1 4 4 H 1.48498 * 109.47507 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47156 * 299.99851 * 3 2 1 6 6 H 1.48503 * 109.47218 * 59.99855 * 3 2 1 7 7 C 1.37872 * 120.00169 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00084 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99899 * 0.02562 * 7 2 1 10 10 H 1.08993 * 109.67598 * 299.48389 * 9 7 2 11 11 C 1.53326 * 109.71220 * 178.94690 * 9 7 2 12 12 C 1.52712 * 108.40912 * 170.43464 * 11 9 7 13 13 C 1.50656 * 110.60605 * 51.12518 * 12 11 9 14 14 C 1.38955 * 117.70042 * 162.35939 * 13 12 11 15 15 C 1.37829 * 120.62546 * 179.31455 * 14 13 12 16 16 C 1.38765 * 119.71198 * 0.03664 * 15 14 13 17 17 O 1.35898 * 120.17199 * 179.87104 * 16 15 14 18 18 C 1.38421 * 119.65209 * 0.14057 * 16 15 14 19 19 C 1.37710 * 122.53247 * 341.98381 * 13 12 11 20 20 C 1.50640 * 122.55457 * 1.14541 * 19 13 12 21 21 H 0.96997 * 120.00121 * 0.02562 * 1 2 3 22 22 H 1.08995 * 109.67365 * 290.16689 * 11 9 7 23 23 H 1.08996 * 109.67475 * 50.66476 * 11 9 7 24 24 H 1.09008 * 109.25283 * 290.83792 * 12 11 9 25 25 H 1.08996 * 109.25259 * 171.41558 * 12 11 9 26 26 H 1.08001 * 119.69067 * 359.33357 * 14 13 12 27 27 H 1.07997 * 120.14806 * 180.02562 * 15 14 13 28 28 H 0.96697 * 114.00612 * 89.99985 * 17 16 15 29 29 H 1.07999 * 119.74958 * 179.97438 * 18 16 15 30 30 H 1.08993 * 109.26097 * 102.17469 * 20 19 13 31 31 H 1.09000 * 109.25280 * 221.60813 * 20 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 1 0.6297 -2.5642 0.8937 11 6 2.2423 -3.6686 -0.0253 12 6 1.4680 -4.9625 0.2159 13 6 0.2907 -5.0582 -0.7194 14 6 -0.2911 -6.3071 -0.8997 15 6 -1.3799 -6.4611 -1.7307 16 6 -1.8998 -5.3589 -2.3944 17 8 -2.9714 -5.5005 -3.2181 18 6 -1.3178 -4.1156 -2.2175 19 6 -0.2199 -3.9640 -1.3815 20 6 0.3716 -2.5854 -1.2453 21 1 -0.4850 0.8400 -0.0004 22 1 2.7344 -3.7110 -0.9969 23 1 2.9881 -3.5349 0.7582 24 1 1.1111 -4.9812 1.2457 25 1 2.1289 -5.8132 0.0498 26 1 0.1134 -7.1653 -0.3836 27 1 -1.8263 -7.4353 -1.8650 28 1 -3.8244 -5.3882 -2.7767 29 1 -1.7209 -3.2568 -2.7336 30 1 0.9738 -2.3638 -2.1263 31 1 -0.4336 -1.8548 -1.1681 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000108371459.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:10 Heat of formation + Delta-G solvation = -42.906954 kcal Electronic energy + Delta-G solvation = -14366.778045 eV Core-core repulsion = 11998.020079 eV Total energy + Delta-G solvation = -2368.757967 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.62475 -37.33723 -34.81693 -32.43695 -31.51998 -29.10135 -27.65046 -25.01257 -22.56538 -21.63455 -21.34357 -18.82762 -17.29782 -16.42645 -15.49563 -15.09568 -14.76340 -14.52695 -13.66658 -13.25163 -12.78324 -12.62251 -12.19709 -12.01522 -11.82548 -11.44051 -10.97238 -10.89347 -10.51282 -10.46981 -10.31422 -10.02629 -9.59732 -9.06766 -8.78573 -8.46443 -8.16667 -7.78465 -6.02010 -4.07719 1.70806 1.86406 3.28390 3.36863 3.40630 4.07395 4.42087 4.58017 5.24783 5.30364 5.39868 5.51482 5.78127 5.89380 5.93751 6.10392 6.22069 6.44127 6.54036 6.64605 6.73845 6.78824 6.87236 6.98961 7.01875 7.11280 7.34515 7.54489 7.72073 7.92193 7.98357 8.05886 8.41882 8.96674 9.57647 11.04643 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.040913 B = 0.008096 C = 0.006962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.210968 B = 3457.707321 C = 4020.738626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.061 3.939 3 Si 0.890 3.110 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.513 4.513 8 H 0.057 0.943 9 C 0.051 3.949 10 H 0.029 0.971 11 C -0.112 4.112 12 C -0.078 4.078 13 C -0.086 4.086 14 C -0.111 4.111 15 C -0.165 4.165 16 C 0.089 3.911 17 O -0.504 6.504 18 C -0.150 4.150 19 C -0.034 4.034 20 C -0.079 4.079 21 H 0.260 0.740 22 H 0.050 0.950 23 H 0.054 0.946 24 H 0.068 0.932 25 H 0.058 0.942 26 H 0.117 0.883 27 H 0.118 0.882 28 H 0.383 0.617 29 H 0.123 0.877 30 H 0.058 0.942 31 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.659 -9.420 -1.578 9.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.140 4.140 3 Si 0.718 3.282 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.551 4.551 8 H 0.076 0.924 9 C 0.032 3.968 10 H 0.047 0.953 11 C -0.150 4.150 12 C -0.115 4.115 13 C -0.087 4.087 14 C -0.129 4.129 15 C -0.183 4.183 16 C 0.045 3.955 17 O -0.314 6.314 18 C -0.169 4.169 19 C -0.034 4.034 20 C -0.117 4.117 21 H 0.070 0.930 22 H 0.068 0.932 23 H 0.073 0.927 24 H 0.086 0.914 25 H 0.077 0.923 26 H 0.135 0.865 27 H 0.136 0.864 28 H 0.237 0.763 29 H 0.141 0.859 30 H 0.076 0.924 31 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -2.373 -9.393 -2.010 9.895 hybrid contribution -0.125 0.947 0.241 0.985 sum -2.497 -8.446 -1.769 8.984 Atomic orbital electron populations 1.69884 1.05883 1.26371 1.50886 1.24991 0.94859 0.99119 0.95047 0.86563 0.80187 0.83862 0.77555 1.19782 1.21059 1.21064 1.21246 0.93011 0.90478 1.50404 0.92449 1.18649 0.92487 0.91908 0.93739 0.95325 1.21656 0.98546 0.94374 1.00393 1.20503 0.94188 0.99233 0.97538 1.19809 0.97783 0.92320 0.98740 1.20985 0.96194 0.97018 0.98707 1.21105 0.99524 0.98231 0.99487 1.18373 0.90854 0.92750 0.93536 1.84801 1.15672 1.94087 1.36795 1.21533 0.98485 0.96497 1.00359 1.20340 0.93132 0.97307 0.92590 1.20805 1.01245 0.89560 1.00045 0.93033 0.93169 0.92687 0.91363 0.92307 0.86504 0.86431 0.76265 0.85920 0.92354 0.88057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.00 11.43 55.43 0.63 -24.37 16 2 C 0.06 1.66 5.31 -17.82 -0.09 1.56 16 3 Si 0.89 20.99 29.54 -169.99 -5.02 15.97 16 4 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.51 -13.81 8.55 -34.44 -0.29 -14.11 16 8 H 0.06 1.53 7.75 -52.48 -0.41 1.12 16 9 C 0.05 1.24 2.12 -91.74 -0.19 1.04 16 10 H 0.03 0.76 8.10 -51.93 -0.42 0.34 16 11 C -0.11 -2.30 5.23 -26.71 -0.14 -2.44 16 12 C -0.08 -1.37 5.67 -28.05 -0.16 -1.53 16 13 C -0.09 -1.61 5.74 -104.57 -0.60 -2.21 16 14 C -0.11 -1.79 9.60 -39.47 -0.38 -2.16 16 15 C -0.16 -2.59 9.99 -39.54 -0.40 -2.98 16 16 C 0.09 1.50 6.70 -39.32 -0.26 1.24 16 17 O -0.50 -7.42 13.51 -19.42 -0.26 -7.68 16 18 C -0.15 -2.84 9.55 -39.30 -0.38 -3.22 16 19 C -0.03 -0.69 5.74 -104.63 -0.60 -1.29 16 20 C -0.08 -1.86 4.62 -28.05 -0.13 -1.99 16 21 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 22 H 0.05 1.02 8.10 -51.93 -0.42 0.60 16 23 H 0.05 1.09 8.12 -51.93 -0.42 0.67 16 24 H 0.07 1.17 8.14 -51.92 -0.42 0.74 16 25 H 0.06 0.89 8.12 -51.93 -0.42 0.47 16 26 H 0.12 1.55 8.05 -52.49 -0.42 1.13 16 27 H 0.12 1.55 8.06 -52.49 -0.42 1.13 16 28 H 0.38 3.72 9.06 45.56 0.41 4.13 16 29 H 0.12 2.26 8.05 -52.49 -0.42 1.84 16 30 H 0.06 1.40 8.11 -51.93 -0.42 0.98 16 31 H 0.10 2.62 6.34 -51.93 -0.33 2.29 16 LS Contribution 258.94 15.07 3.90 3.90 Total: -1.00 -29.13 258.94 -7.63 -36.75 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: -3.25 Total: 3.53 kcal Atomic # 6 Polarization: -24.47 SS G_CDS: -3.63 Total: -28.10 kcal Atomic # 7 Polarization: -25.00 SS G_CDS: 0.63 Total: -24.37 kcal Atomic # 8 Polarization: -7.42 SS G_CDS: -0.26 Total: -7.68 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -29.13 -7.63 -36.75 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108371459.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.153 kcal (2) G-P(sol) polarization free energy of solvation -29.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds