Wall clock time and date at job start Mon Mar 30 2020 02:33:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 120.00009 * 2 1 4 4 H 1.48498 * 109.47507 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47156 * 299.99851 * 3 2 1 6 6 H 1.48503 * 109.47218 * 59.99855 * 3 2 1 7 7 C 1.37872 * 120.00169 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00084 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99899 * 0.02562 * 7 2 1 10 10 H 1.08993 * 109.67598 * 299.48389 * 9 7 2 11 11 C 1.53326 * 109.71220 * 178.94690 * 9 7 2 12 12 C 1.52712 * 108.40912 * 170.43464 * 11 9 7 13 13 C 1.50656 * 110.60605 * 51.12518 * 12 11 9 14 14 C 1.38955 * 117.70042 * 162.35939 * 13 12 11 15 15 C 1.37829 * 120.62546 * 179.31455 * 14 13 12 16 16 C 1.38765 * 119.71198 * 0.03664 * 15 14 13 17 17 O 1.35898 * 120.17199 * 179.87104 * 16 15 14 18 18 C 1.38421 * 119.65209 * 0.14057 * 16 15 14 19 19 C 1.37710 * 122.53247 * 341.98381 * 13 12 11 20 20 C 1.50640 * 122.55457 * 1.14541 * 19 13 12 21 21 H 0.96997 * 120.00121 * 0.02562 * 1 2 3 22 22 H 1.08995 * 109.67365 * 290.16689 * 11 9 7 23 23 H 1.08996 * 109.67475 * 50.66476 * 11 9 7 24 24 H 1.09008 * 109.25283 * 290.83792 * 12 11 9 25 25 H 1.08996 * 109.25259 * 171.41558 * 12 11 9 26 26 H 1.08001 * 119.69067 * 359.33357 * 14 13 12 27 27 H 1.07997 * 120.14806 * 180.02562 * 15 14 13 28 28 H 0.96697 * 114.00612 * 89.99985 * 17 16 15 29 29 H 1.07999 * 119.74958 * 179.97438 * 18 16 15 30 30 H 1.08993 * 109.26097 * 102.17469 * 20 19 13 31 31 H 1.09000 * 109.25280 * 221.60813 * 20 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 1 0.6297 -2.5642 0.8937 11 6 2.2423 -3.6686 -0.0253 12 6 1.4680 -4.9625 0.2159 13 6 0.2907 -5.0582 -0.7194 14 6 -0.2911 -6.3071 -0.8997 15 6 -1.3799 -6.4611 -1.7307 16 6 -1.8998 -5.3589 -2.3944 17 8 -2.9714 -5.5005 -3.2181 18 6 -1.3178 -4.1156 -2.2175 19 6 -0.2199 -3.9640 -1.3815 20 6 0.3716 -2.5854 -1.2453 21 1 -0.4850 0.8400 -0.0004 22 1 2.7344 -3.7110 -0.9969 23 1 2.9881 -3.5349 0.7582 24 1 1.1111 -4.9812 1.2457 25 1 2.1289 -5.8132 0.0498 26 1 0.1134 -7.1653 -0.3836 27 1 -1.8263 -7.4353 -1.8650 28 1 -3.8244 -5.3882 -2.7767 29 1 -1.7209 -3.2568 -2.7336 30 1 0.9738 -2.3638 -2.1263 31 1 -0.4336 -1.8548 -1.1681 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000108371459.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:10 Heat of formation + Delta-G solvation = -60.632418 kcal Electronic energy + Delta-G solvation = -14367.546679 eV Core-core repulsion = 11998.020079 eV Total energy + Delta-G solvation = -2369.526601 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.01600 -38.71326 -36.40826 -34.25500 -33.06358 -30.71989 -29.15691 -26.93372 -24.11601 -23.06170 -22.93808 -20.37079 -18.66638 -18.42781 -16.97050 -16.49406 -16.41988 -16.10650 -15.11089 -14.84931 -14.47984 -14.09097 -13.77791 -13.72472 -13.37667 -12.91232 -12.83171 -12.61058 -12.29163 -12.10705 -11.96481 -11.45721 -11.38654 -10.85214 -10.68133 -10.49072 -9.60613 -9.18854 -8.10054 -6.23776 0.37627 0.49321 1.39560 1.41698 1.52939 2.42812 2.74559 3.17065 3.37100 3.96241 4.03737 4.14365 4.39154 4.44881 4.48236 4.65943 4.82180 4.96750 5.02302 5.11484 5.16313 5.25546 5.27786 5.32470 5.52171 5.56310 5.62043 5.94238 5.96472 5.99931 6.14813 6.37784 6.88642 6.89338 7.44904 8.95133 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.040913 B = 0.008096 C = 0.006962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.210968 B = 3457.707321 C = 4020.738626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.011 3.989 3 Si 0.954 3.046 4 H -0.266 1.266 5 H -0.282 1.282 6 H -0.280 1.280 7 C -0.534 4.534 8 H 0.055 0.945 9 C 0.047 3.953 10 H -0.003 1.003 11 C -0.107 4.107 12 C -0.072 4.072 13 C -0.101 4.101 14 C -0.100 4.100 15 C -0.155 4.155 16 C 0.094 3.906 17 O -0.508 6.508 18 C -0.170 4.170 19 C -0.064 4.064 20 C -0.065 4.065 21 H 0.260 0.740 22 H 0.047 0.953 23 H 0.059 0.941 24 H 0.074 0.926 25 H 0.095 0.905 26 H 0.156 0.844 27 H 0.153 0.847 28 H 0.407 0.593 29 H 0.111 0.889 30 H 0.038 0.962 31 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.486 -11.654 -1.532 12.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.187 4.187 3 Si 0.779 3.221 4 H -0.190 1.190 5 H -0.208 1.208 6 H -0.206 1.206 7 C -0.572 4.572 8 H 0.074 0.926 9 C 0.028 3.972 10 H 0.015 0.985 11 C -0.144 4.144 12 C -0.109 4.109 13 C -0.101 4.101 14 C -0.118 4.118 15 C -0.173 4.173 16 C 0.050 3.950 17 O -0.321 6.321 18 C -0.189 4.189 19 C -0.065 4.065 20 C -0.102 4.102 21 H 0.069 0.931 22 H 0.066 0.934 23 H 0.077 0.923 24 H 0.092 0.908 25 H 0.113 0.887 26 H 0.173 0.827 27 H 0.171 0.829 28 H 0.265 0.735 29 H 0.129 0.871 30 H 0.056 0.944 31 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -2.211 -11.634 -1.958 12.003 hybrid contribution -0.264 1.595 0.194 1.628 sum -2.476 -10.039 -1.764 10.489 Atomic orbital electron populations 1.70033 1.07209 1.27052 1.51522 1.25777 0.95677 1.02474 0.94795 0.85570 0.79199 0.79755 0.77533 1.19003 1.20790 1.20611 1.21639 0.93175 0.92046 1.50340 0.92648 1.18603 0.93005 0.92916 0.92642 0.98510 1.21539 0.97932 0.94543 1.00401 1.20485 0.94165 0.98535 0.97697 1.19993 0.98448 0.92864 0.98821 1.21332 0.95568 0.96794 0.98130 1.21502 0.98780 0.99106 0.97898 1.18410 0.91253 0.92184 0.93148 1.84738 1.16480 1.93855 1.37020 1.21527 0.98793 0.97609 1.00949 1.20108 0.94813 0.96290 0.95253 1.20425 0.99719 0.91374 0.98722 0.93076 0.93441 0.92257 0.90777 0.88709 0.82655 0.82900 0.73514 0.87057 0.94368 0.91520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.68 11.43 21.45 0.25 -53.44 16 2 C 0.01 0.63 5.31 84.65 0.45 1.08 16 3 Si 0.95 43.93 29.54 68.60 2.03 45.96 16 4 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 5 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 6 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 7 C -0.53 -29.71 8.55 25.60 0.22 -29.49 16 8 H 0.06 3.01 7.75 -2.91 -0.02 2.99 16 9 C 0.05 2.38 2.12 -11.52 -0.02 2.36 16 10 H 0.00 -0.18 8.10 -2.39 -0.02 -0.20 16 11 C -0.11 -4.37 5.23 30.61 0.16 -4.21 16 12 C -0.07 -2.40 5.67 29.74 0.17 -2.23 16 13 C -0.10 -3.61 5.74 -19.83 -0.11 -3.72 16 14 C -0.10 -2.82 9.60 22.34 0.21 -2.61 16 15 C -0.15 -4.21 9.99 22.30 0.22 -3.99 16 16 C 0.09 2.99 6.70 22.44 0.15 3.14 16 17 O -0.51 -13.66 13.51 -92.40 -1.25 -14.91 16 18 C -0.17 -6.51 9.55 22.45 0.21 -6.30 16 19 C -0.06 -2.70 5.74 -19.87 -0.11 -2.81 16 20 C -0.06 -3.22 4.62 29.74 0.14 -3.08 16 21 H 0.26 14.44 8.31 -92.71 -0.77 13.67 16 22 H 0.05 1.93 8.10 -2.39 -0.02 1.92 16 23 H 0.06 2.32 8.12 -2.39 -0.02 2.31 16 24 H 0.07 2.38 8.14 -2.38 -0.02 2.36 16 25 H 0.09 2.49 8.12 -2.39 -0.02 2.47 16 26 H 0.16 3.19 8.05 -2.91 -0.02 3.17 16 27 H 0.15 3.13 8.06 -2.91 -0.02 3.11 16 28 H 0.41 6.78 9.06 -74.06 -0.67 6.11 16 29 H 0.11 4.34 8.05 -2.91 -0.02 4.31 16 30 H 0.04 1.95 8.11 -2.39 -0.02 1.94 16 31 H 0.07 3.71 6.34 -2.39 -0.02 3.69 16 Total: -1.00 -64.73 258.94 3.16 -61.57 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: 0.45 Total: 12.68 kcal Atomic # 6 Polarization: -53.55 SS G_CDS: 1.68 Total: -51.86 kcal Atomic # 7 Polarization: -53.68 SS G_CDS: 0.25 Total: -53.44 kcal Atomic # 8 Polarization: -13.66 SS G_CDS: -1.25 Total: -14.91 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.96 kcal Total: -64.73 3.16 -61.57 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108371459.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.939 kcal (2) G-P(sol) polarization free energy of solvation -64.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds