Wall clock time and date at job start Mon Mar 30 2020 02:35:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86787 * 120.00522 * 2 1 4 4 H 1.48499 * 109.47412 * 270.00061 * 3 2 1 5 5 H 1.48500 * 109.47388 * 29.99997 * 3 2 1 6 6 H 1.48506 * 109.47441 * 149.99835 * 3 2 1 7 7 C 1.37880 * 119.99291 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00343 * 359.97438 * 7 2 1 9 9 C 1.50705 * 119.99815 * 180.02562 * 7 2 1 10 10 C 1.53000 * 109.47074 * 185.09303 * 9 7 2 11 11 H 1.08996 * 109.43717 * 305.29533 * 10 9 7 12 12 C 1.53075 * 109.43436 * 65.21244 * 10 9 7 13 13 C 1.53411 * 108.28777 * 168.20974 * 12 10 9 14 14 O 1.42828 * 108.37524 * 295.25038 * 13 12 10 15 15 C 1.35842 * 117.85803 * 49.15159 * 14 13 12 16 16 C 1.39148 * 118.50088 * 162.98237 * 15 14 13 17 17 C 1.37966 * 120.21514 * 179.81843 * 16 15 14 18 18 C 1.38289 * 119.96495 * 359.97438 * 17 16 15 19 19 C 1.38107 * 119.97588 * 0.07401 * 18 17 16 20 20 C 1.38289 * 121.78690 * 342.93611 * 15 14 13 21 21 H 0.97003 * 119.99357 * 0.02562 * 1 2 3 22 22 H 1.08995 * 109.47385 * 65.09341 * 9 7 2 23 23 H 1.08999 * 109.46472 * 305.09240 * 9 7 2 24 24 H 1.08993 * 109.70364 * 287.90691 * 12 10 9 25 25 H 1.09002 * 109.70259 * 48.47374 * 12 10 9 26 26 H 1.09003 * 109.68351 * 54.97766 * 13 12 10 27 27 H 1.09011 * 109.68448 * 175.49477 * 13 12 10 28 28 H 1.07998 * 119.89004 * 359.79267 * 16 15 14 29 29 H 1.08005 * 120.01523 * 179.97438 * 17 16 15 30 30 H 1.07997 * 120.01459 * 180.10058 * 18 17 16 31 31 H 1.08005 * 119.83475 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6175 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4469 2.6526 0.7000 6 1 3.5469 1.4399 0.7001 7 6 2.0044 -1.1942 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1943 0.0000 10 6 4.0214 -2.6311 -0.1288 11 1 3.5820 -3.2438 0.6583 12 6 3.6211 -3.1930 -1.4952 13 6 4.3855 -4.5041 -1.7193 14 8 5.7801 -4.2050 -1.7941 15 6 6.3144 -3.4216 -0.8214 16 6 7.6968 -3.4095 -0.6632 17 6 8.2773 -2.6239 0.3110 18 6 7.4842 -1.8449 1.1335 19 6 6.1117 -1.8552 0.9800 20 6 5.5231 -2.6443 0.0045 21 1 -0.4849 0.8401 -0.0004 22 1 3.8745 -0.7622 0.9325 23 1 3.8751 -0.6029 -0.8403 24 1 2.5484 -3.3854 -1.5135 25 1 3.8795 -2.4782 -2.2765 26 1 4.1998 -5.1841 -0.8878 27 1 4.0579 -4.9655 -2.6510 28 1 8.3173 -4.0175 -1.3049 29 1 9.3506 -2.6173 0.4313 30 1 7.9378 -1.2283 1.8953 31 1 5.4944 -1.2462 1.6239 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000140491817.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:35 Heat of formation + Delta-G solvation = -46.332818 kcal Electronic energy + Delta-G solvation = -14496.032249 eV Core-core repulsion = 12127.125725 eV Total energy + Delta-G solvation = -2368.906523 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.63389 -38.34421 -36.86040 -34.45033 -31.57607 -31.19094 -30.48583 -26.39754 -24.77195 -23.77794 -22.27578 -20.62773 -19.21442 -18.52412 -17.44459 -16.87996 -16.27462 -15.90003 -15.31641 -15.03732 -14.74951 -14.61282 -14.23530 -14.03911 -13.53328 -13.18172 -12.88299 -12.50570 -12.37264 -12.08261 -11.96460 -11.79164 -11.64388 -11.15455 -10.99809 -10.75691 -9.66313 -9.04756 -8.30945 -6.33435 0.44240 0.53313 1.32436 1.33780 1.45553 2.33297 2.42253 2.87626 3.04171 3.78614 3.85303 3.91101 4.02288 4.28778 4.29169 4.44920 4.50136 4.61598 4.68435 4.72162 4.94216 5.06692 5.14992 5.20393 5.29576 5.39654 5.45720 5.59622 5.66510 5.73578 5.95293 6.26140 6.52546 6.72419 7.30433 8.85256 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.032988 B = 0.009503 C = 0.007811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.583804 B = 2945.709384 C = 3583.940933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.009 3.991 3 Si 0.941 3.059 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.250 1.250 7 C -0.521 4.521 8 H 0.041 0.959 9 C 0.007 3.993 10 C -0.035 4.035 11 H 0.065 0.935 12 C -0.140 4.140 13 C 0.064 3.936 14 O -0.328 6.328 15 C 0.108 3.892 16 C -0.158 4.158 17 C -0.088 4.088 18 C -0.154 4.154 19 C -0.103 4.103 20 C -0.164 4.164 21 H 0.266 0.734 22 H 0.022 0.978 23 H 0.009 0.991 24 H 0.077 0.923 25 H 0.059 0.941 26 H 0.069 0.931 27 H 0.132 0.868 28 H 0.146 0.854 29 H 0.163 0.837 30 H 0.147 0.853 31 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.032 -5.888 -0.599 17.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.188 4.188 3 Si 0.765 3.235 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.173 1.173 7 C -0.559 4.559 8 H 0.059 0.941 9 C -0.031 4.031 10 C -0.053 4.053 11 H 0.084 0.916 12 C -0.177 4.177 13 C -0.010 4.010 14 O -0.243 6.243 15 C 0.063 3.937 16 C -0.176 4.176 17 C -0.105 4.105 18 C -0.172 4.172 19 C -0.121 4.121 20 C -0.165 4.165 21 H 0.075 0.925 22 H 0.040 0.960 23 H 0.028 0.972 24 H 0.095 0.905 25 H 0.078 0.922 26 H 0.087 0.913 27 H 0.150 0.850 28 H 0.164 0.836 29 H 0.180 0.820 30 H 0.165 0.835 31 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 15.968 -5.872 -0.761 17.031 hybrid contribution -0.857 0.953 0.140 1.289 sum 15.111 -4.919 -0.621 15.904 Atomic orbital electron populations 1.70050 1.08040 1.28015 1.52741 1.25888 0.95516 1.03060 0.94374 0.85789 0.79611 0.79069 0.79036 1.19612 1.20791 1.17318 1.21383 0.91383 0.93253 1.49913 0.94100 1.19530 0.94228 0.93089 0.96211 1.19881 0.89849 0.98107 0.97441 0.91635 1.22098 1.01339 0.97391 0.96914 1.23154 0.77410 0.95897 1.04537 1.85895 1.26616 1.65438 1.46335 1.19010 0.93237 0.92059 0.89418 1.20882 0.91115 1.03796 1.01843 1.21278 1.01238 0.94496 0.93531 1.21344 0.92650 1.01574 1.01665 1.21243 0.96132 0.97642 0.97121 1.20161 0.95970 1.00699 0.99678 0.92533 0.95971 0.97233 0.90470 0.92243 0.91322 0.85031 0.83624 0.81995 0.83539 0.86319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.18 13.96 21.45 0.30 -58.88 16 2 C 0.01 0.50 5.47 84.65 0.46 0.97 16 3 Si 0.94 44.81 27.37 68.60 1.88 46.68 16 4 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 5 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16 6 H -0.25 -11.13 6.69 99.48 0.67 -10.47 16 7 C -0.52 -29.72 9.03 25.60 0.23 -29.49 16 8 H 0.04 2.52 7.56 -2.91 -0.02 2.50 16 9 C 0.01 0.32 3.18 29.85 0.09 0.41 16 10 C -0.03 -1.41 2.32 -11.49 -0.03 -1.44 16 11 H 0.07 2.75 8.14 -2.39 -0.02 2.74 16 12 C -0.14 -5.21 5.10 30.76 0.16 -5.06 16 13 C 0.06 1.89 7.03 72.12 0.51 2.40 16 14 O -0.33 -10.59 10.27 -91.78 -0.94 -11.53 16 15 C 0.11 3.56 6.47 22.50 0.15 3.71 16 16 C -0.16 -4.21 9.94 22.42 0.22 -3.99 16 17 C -0.09 -2.00 10.04 22.22 0.22 -1.78 16 18 C -0.15 -4.00 10.05 22.25 0.22 -3.77 16 19 C -0.10 -3.44 9.09 22.32 0.20 -3.23 16 20 C -0.16 -5.98 5.43 -19.75 -0.11 -6.09 16 21 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 22 H 0.02 1.04 5.69 -2.39 -0.01 1.03 16 23 H 0.01 0.46 7.25 -2.39 -0.02 0.44 16 24 H 0.08 3.04 7.49 -2.39 -0.02 3.03 16 25 H 0.06 2.33 8.07 -2.39 -0.02 2.31 16 26 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 27 H 0.13 3.02 8.14 -2.38 -0.02 3.00 16 28 H 0.15 3.17 8.06 -2.91 -0.02 3.15 16 29 H 0.16 2.39 8.06 -2.91 -0.02 2.37 16 30 H 0.15 2.91 8.06 -2.91 -0.02 2.89 16 31 H 0.12 4.07 6.38 -2.91 -0.02 4.05 16 Total: -1.00 -66.32 254.98 4.64 -61.68 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: 1.07 Total: 9.40 kcal Atomic # 6 Polarization: -49.69 SS G_CDS: 2.34 Total: -47.36 kcal Atomic # 7 Polarization: -59.18 SS G_CDS: 0.30 Total: -58.88 kcal Atomic # 8 Polarization: -10.59 SS G_CDS: -0.94 Total: -11.53 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 1.88 Total: 46.68 kcal Total: -66.32 4.64 -61.68 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000140491817.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.345 kcal (2) G-P(sol) polarization free energy of solvation -66.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds