Wall clock time and date at job start Mon Mar 30 2020 02:34:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00205 * 2 1 4 4 H 1.48505 * 109.47199 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47344 * 300.00092 * 3 2 1 6 6 H 1.48501 * 109.47315 * 60.00018 * 3 2 1 7 7 C 1.37881 * 119.99568 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99763 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00164 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47136 * 180.02562 * 9 7 2 11 11 H 1.09004 * 110.27116 * 52.92609 * 10 9 7 12 12 C 1.51371 * 110.30478 * 290.74889 * 10 9 7 13 13 C 1.38502 * 130.39225 * 43.88163 * 12 10 9 14 14 C 1.38105 * 120.21399 * 180.02562 * 13 12 10 15 15 C 1.38251 * 119.93550 * 0.02562 * 14 13 12 16 16 C 1.38111 * 119.93670 * 359.97438 * 15 14 13 17 17 C 1.38221 * 109.75739 * 223.89096 * 12 10 9 18 18 C 1.51895 * 109.80851 * 359.96766 * 17 12 10 19 19 C 1.54346 * 110.30442 * 175.00013 * 10 9 7 20 20 H 1.09002 * 110.82237 * 27.04518 * 19 10 9 21 21 O 1.42898 * 110.82138 * 263.69104 * 19 10 9 22 22 H 0.97003 * 120.00128 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.47276 * 59.99869 * 9 7 2 24 24 H 1.08998 * 109.47066 * 300.00144 * 9 7 2 25 25 H 1.07998 * 119.89306 * 359.97438 * 13 12 10 26 26 H 1.08000 * 120.03060 * 179.97438 * 14 13 12 27 27 H 1.07995 * 120.03390 * 179.97438 * 15 14 13 28 28 H 1.08000 * 119.89093 * 179.97438 * 16 15 14 29 29 H 1.08995 * 110.37227 * 258.39844 * 18 17 12 30 30 H 1.08998 * 110.48243 * 136.07687 * 18 17 12 31 31 H 0.96703 * 113.99648 * 182.69997 * 21 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3965 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 1 2.9590 -3.5486 0.8153 12 6 2.9687 -3.7346 -1.3281 13 6 3.5252 -2.7305 -2.1029 14 6 4.1450 -3.0377 -3.2982 15 6 4.2103 -4.3515 -3.7238 16 6 3.6560 -5.3542 -2.9525 17 6 3.0347 -5.0481 -1.7532 18 6 2.3586 -5.9525 -0.7372 19 6 1.4970 -5.0063 0.1256 20 1 0.4871 -4.9269 -0.2768 21 8 1.4667 -5.4451 1.4852 22 1 -0.4850 0.8401 0.0004 23 1 0.6239 -2.5567 -0.8903 24 1 0.6246 -2.5571 0.8897 25 1 3.4735 -1.7038 -1.7718 26 1 4.5776 -2.2524 -3.9003 27 1 4.6943 -4.5935 -4.6584 28 1 3.7070 -6.3802 -3.2859 29 1 3.1041 -6.4536 -0.1198 30 1 1.7277 -6.6858 -1.2395 31 1 1.0437 -6.3055 1.6115 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000196404743.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:51 Heat of formation + Delta-G solvation = -58.188729 kcal Electronic energy + Delta-G solvation = -14453.690920 eV Core-core repulsion = 12084.270285 eV Total energy + Delta-G solvation = -2369.420634 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.16431 -38.11708 -35.83522 -34.64392 -32.78025 -30.51395 -28.93480 -27.38472 -24.07829 -23.25602 -21.86049 -20.97112 -18.65157 -18.19792 -16.96047 -16.67965 -16.21387 -15.85231 -15.22350 -14.60065 -14.46386 -14.24422 -14.03407 -13.57081 -13.21796 -13.19508 -12.97623 -12.67023 -12.45283 -11.94832 -11.83193 -11.74203 -11.20287 -11.11634 -10.79051 -10.55221 -9.57693 -9.31454 -8.19993 -6.28407 0.54421 0.62618 1.36807 1.37459 1.50252 2.38921 2.96203 3.12941 3.29056 3.54740 3.80727 4.09715 4.21996 4.29690 4.40771 4.57858 4.70785 4.75631 4.76787 4.93392 5.01635 5.11597 5.26416 5.33205 5.47948 5.58307 5.67915 5.76861 5.80903 5.95586 6.22812 6.26892 6.83407 6.97560 7.38045 8.92506 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.025786 B = 0.010667 C = 0.007992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.610841 B = 2624.358202 C = 3502.739416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.001 3.999 3 Si 0.958 3.042 4 H -0.261 1.261 5 H -0.277 1.277 6 H -0.279 1.279 7 C -0.522 4.522 8 H 0.061 0.939 9 C 0.043 3.957 10 C -0.044 4.044 11 H 0.062 0.938 12 C -0.091 4.091 13 C -0.121 4.121 14 C -0.133 4.133 15 C -0.124 4.124 16 C -0.113 4.113 17 C -0.118 4.118 18 C -0.095 4.095 19 C 0.107 3.893 20 H 0.062 0.938 21 O -0.573 6.573 22 H 0.262 0.738 23 H -0.010 1.010 24 H -0.011 1.011 25 H 0.112 0.888 26 H 0.138 0.862 27 H 0.155 0.845 28 H 0.150 0.850 29 H 0.097 0.903 30 H 0.103 0.897 31 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.702 -12.137 -5.738 15.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.197 4.197 3 Si 0.782 3.218 4 H -0.185 1.185 5 H -0.202 1.202 6 H -0.205 1.205 7 C -0.560 4.560 8 H 0.079 0.921 9 C 0.006 3.994 10 C -0.062 4.062 11 H 0.080 0.920 12 C -0.091 4.091 13 C -0.139 4.139 14 C -0.151 4.151 15 C -0.141 4.141 16 C -0.130 4.130 17 C -0.118 4.118 18 C -0.132 4.132 19 C 0.048 3.952 20 H 0.079 0.921 21 O -0.381 6.381 22 H 0.071 0.929 23 H 0.008 0.992 24 H 0.007 0.993 25 H 0.130 0.870 26 H 0.156 0.844 27 H 0.173 0.827 28 H 0.168 0.832 29 H 0.115 0.885 30 H 0.121 0.879 31 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 6.860 -11.470 -5.639 14.506 hybrid contribution -0.378 0.908 0.234 1.011 sum 6.481 -10.562 -5.405 13.520 Atomic orbital electron populations 1.70104 1.07736 1.27527 1.52007 1.25914 0.95690 1.03044 0.95019 0.85503 0.79228 0.79224 0.77806 1.18540 1.20246 1.20514 1.21538 0.93185 0.91677 1.49596 0.92135 1.18922 0.93517 0.92624 0.94288 1.20648 0.96715 0.94630 0.94204 0.91970 1.20480 0.98081 0.94526 0.95980 1.21197 0.97734 0.99669 0.95343 1.21341 0.99952 0.98104 0.95733 1.21365 1.00070 0.92015 1.00667 1.20891 0.98303 1.00764 0.93062 1.20894 1.00068 0.94298 0.96514 1.21774 0.99003 0.96973 0.95475 1.22460 0.97616 0.93126 0.82016 0.92057 1.86530 1.83445 1.42261 1.25862 0.92875 0.99171 0.99314 0.87024 0.84442 0.82696 0.83238 0.88452 0.87909 0.75479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.03 13.29 21.45 0.28 -57.75 16 2 C 0.00 0.05 5.46 84.66 0.46 0.51 16 3 Si 0.96 45.27 29.54 68.60 2.03 47.30 16 4 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16 5 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 6 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 7 C -0.52 -30.33 7.28 25.60 0.19 -30.15 16 8 H 0.06 3.42 6.50 -2.91 -0.02 3.41 16 9 C 0.04 2.42 4.33 29.85 0.13 2.55 16 10 C -0.04 -1.98 2.58 -10.87 -0.03 -2.01 16 11 H 0.06 3.01 8.10 -2.38 -0.02 2.99 16 12 C -0.09 -3.76 5.57 -19.59 -0.11 -3.87 16 13 C -0.12 -5.02 9.29 22.30 0.21 -4.81 16 14 C -0.13 -4.31 10.05 22.24 0.22 -4.09 16 15 C -0.12 -3.27 10.05 22.24 0.22 -3.05 16 16 C -0.11 -3.03 10.04 22.30 0.22 -2.81 16 17 C -0.12 -3.89 6.15 -19.42 -0.12 -4.01 16 18 C -0.10 -2.64 6.56 30.69 0.20 -2.44 16 19 C 0.11 3.82 3.95 31.51 0.12 3.94 16 20 H 0.06 2.25 7.91 -2.39 -0.02 2.23 16 21 O -0.57 -18.95 13.39 -148.98 -2.00 -20.94 16 22 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 23 H -0.01 -0.61 8.13 -2.39 -0.02 -0.62 16 24 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 25 H 0.11 5.20 5.57 -2.91 -0.02 5.18 16 26 H 0.14 3.72 8.06 -2.91 -0.02 3.70 16 27 H 0.16 2.86 8.06 -2.91 -0.02 2.83 16 28 H 0.15 2.87 8.06 -2.91 -0.02 2.85 16 29 H 0.10 2.43 8.10 -2.39 -0.02 2.41 16 30 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 31 H 0.40 8.05 9.12 -74.06 -0.68 7.37 16 Total: -1.00 -71.11 261.03 2.49 -68.61 By element: Atomic # 1 Polarization: 12.56 SS G_CDS: 0.45 Total: 13.02 kcal Atomic # 6 Polarization: -51.96 SS G_CDS: 1.72 Total: -50.23 kcal Atomic # 7 Polarization: -58.03 SS G_CDS: 0.28 Total: -57.75 kcal Atomic # 8 Polarization: -18.95 SS G_CDS: -2.00 Total: -20.94 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.30 kcal Total: -71.11 2.49 -68.61 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000196404743.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.424 kcal (2) G-P(sol) polarization free energy of solvation -71.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds