Wall clock time and date at job start Mon Mar 30 2020 02:34:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47168 * 180.02562 * 9 7 2 11 11 H 1.09000 * 110.26437 * 304.37804 * 10 9 7 12 12 C 1.51368 * 110.30324 * 66.45501 * 10 9 7 13 13 C 1.38502 * 130.38998 * 281.76069 * 12 10 9 14 14 C 1.38106 * 120.21236 * 179.97438 * 13 12 10 15 15 C 1.38244 * 119.93869 * 0.02562 * 14 13 12 16 16 C 1.38109 * 119.93362 * 359.97438 * 15 14 13 17 17 C 1.38210 * 109.75973 * 101.74131 * 12 10 9 18 18 C 1.51369 * 109.76339 * 359.97438 * 17 12 10 19 19 C 1.54344 * 110.30282 * 182.20190 * 10 9 7 20 20 H 1.08998 * 110.82865 * 25.64741 * 19 10 9 21 21 O 1.42905 * 110.82134 * 149.19663 * 19 10 9 22 22 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 23 23 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 24 24 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 25 25 H 1.07997 * 119.89357 * 359.95760 * 13 12 10 26 26 H 1.08001 * 120.02889 * 179.97438 * 14 13 12 27 27 H 1.08006 * 120.03748 * 180.02562 * 15 14 13 28 28 H 1.07993 * 119.89337 * 179.97438 * 16 15 14 29 29 H 1.08994 * 110.30361 * 136.11337 * 18 17 12 30 30 H 1.08997 * 110.30466 * 258.17418 * 18 17 12 31 31 H 0.96695 * 113.99824 * 179.97438 * 21 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 1 2.9294 -3.5739 -0.8445 12 6 3.0176 -3.6928 1.3009 13 6 4.0868 -2.9232 1.7284 14 6 4.6387 -3.1327 2.9770 15 6 4.1233 -4.1139 3.8033 16 6 3.0571 -4.8824 3.3788 17 6 2.5020 -4.6735 2.1272 18 6 1.3475 -5.3686 1.4379 19 6 1.4938 -5.0091 -0.0562 20 1 0.5162 -4.8886 -0.5230 21 8 2.2680 -5.9947 -0.7427 22 1 -0.4850 0.8401 0.0004 23 1 0.6247 -2.5571 0.8897 24 1 0.6240 -2.5568 -0.8903 25 1 4.4905 -2.1570 1.0832 26 1 5.4726 -2.5311 3.3071 27 1 4.5533 -4.2788 4.7802 28 1 2.6553 -5.6489 4.0247 29 1 1.4189 -6.4474 1.5757 30 1 0.3980 -5.0003 1.8263 31 1 1.8391 -6.8592 -0.8039 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000196404746.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:54 Heat of formation + Delta-G solvation = -37.842526 kcal Electronic energy + Delta-G solvation = -14513.326379 eV Core-core repulsion = 12144.788023 eV Total energy + Delta-G solvation = -2368.538357 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.79600 -36.72183 -34.18288 -32.68862 -31.05841 -28.91126 -27.61274 -25.55823 -22.32554 -21.93882 -20.48822 -19.31118 -17.01937 -16.04988 -15.69930 -14.88021 -14.74682 -14.37544 -14.09538 -13.06143 -12.96974 -12.52775 -12.28899 -12.13527 -11.61342 -11.39023 -11.28445 -10.85913 -10.62511 -10.41549 -10.23301 -9.87366 -9.75655 -9.44755 -9.05766 -8.35807 -8.18724 -7.84851 -6.00908 -4.02002 1.95365 2.03758 3.33738 3.37803 3.40297 4.37507 4.42708 4.65372 4.93287 5.10709 5.35980 5.47171 5.53161 5.54455 5.67605 6.00009 6.03975 6.10162 6.18301 6.37060 6.45657 6.66402 6.74680 6.89771 6.98033 7.08289 7.34061 7.52646 7.67079 7.73558 7.96686 8.00738 8.38898 9.01665 9.61170 11.10728 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.026324 B = 0.010610 C = 0.008468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.408710 B = 2638.464069 C = 3305.835129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.058 3.942 3 Si 0.890 3.110 4 H -0.288 1.288 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.513 4.513 8 H 0.058 0.942 9 C 0.039 3.961 10 C -0.042 4.042 11 H 0.078 0.922 12 C -0.041 4.041 13 C -0.092 4.092 14 C -0.127 4.127 15 C -0.137 4.137 16 C -0.115 4.115 17 C -0.106 4.106 18 C -0.106 4.106 19 C 0.098 3.902 20 H 0.072 0.928 21 O -0.562 6.562 22 H 0.261 0.739 23 H 0.020 0.980 24 H 0.023 0.977 25 H 0.121 0.879 26 H 0.115 0.885 27 H 0.114 0.886 28 H 0.109 0.891 29 H 0.069 0.931 30 H 0.085 0.915 31 H 0.368 0.632 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.044 -9.888 3.941 11.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.143 4.143 3 Si 0.718 3.282 4 H -0.213 1.213 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.552 4.552 8 H 0.076 0.924 9 C 0.002 3.998 10 C -0.061 4.061 11 H 0.096 0.904 12 C -0.041 4.041 13 C -0.110 4.110 14 C -0.145 4.145 15 C -0.155 4.155 16 C -0.133 4.133 17 C -0.106 4.106 18 C -0.144 4.144 19 C 0.040 3.960 20 H 0.090 0.910 21 O -0.366 6.366 22 H 0.070 0.930 23 H 0.038 0.962 24 H 0.041 0.959 25 H 0.139 0.861 26 H 0.133 0.867 27 H 0.132 0.868 28 H 0.127 0.873 29 H 0.088 0.912 30 H 0.103 0.897 31 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 4.304 -9.257 3.893 10.926 hybrid contribution -0.010 0.604 0.253 0.655 sum 4.294 -8.653 4.146 10.512 Atomic orbital electron populations 1.69945 1.06022 1.26711 1.50882 1.24975 0.94813 0.99130 0.95347 0.86687 0.79656 0.83236 0.78666 1.21318 1.20186 1.20195 1.21125 0.93074 0.90507 1.50454 0.92380 1.19058 0.93010 0.90213 0.97552 1.20937 0.97621 0.93189 0.94314 0.90361 1.20508 0.93788 0.93441 0.96413 1.20712 0.95783 0.98447 0.96058 1.20955 1.00446 0.98556 0.94549 1.20815 0.97807 0.97490 0.99388 1.20422 0.97293 1.00411 0.95201 1.20458 0.97468 0.98055 0.94588 1.21720 0.97105 0.99456 0.96071 1.22711 0.94420 0.89129 0.89768 0.90981 1.86569 1.48233 1.23039 1.78804 0.92959 0.96180 0.95858 0.86084 0.86669 0.86837 0.87262 0.91246 0.89687 0.78598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.69 13.29 55.43 0.74 -25.95 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 16 4 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 5 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.51 -14.26 8.46 -34.44 -0.29 -14.55 16 8 H 0.06 1.56 6.09 -52.49 -0.32 1.24 16 9 C 0.04 0.99 4.37 -27.89 -0.12 0.86 16 10 C -0.04 -0.91 2.61 -90.74 -0.24 -1.15 16 11 H 0.08 1.77 8.11 -51.93 -0.42 1.34 16 12 C -0.04 -0.87 5.15 -104.21 -0.54 -1.41 16 13 C -0.09 -1.85 9.31 -39.53 -0.37 -2.22 16 14 C -0.13 -2.20 10.05 -39.63 -0.40 -2.60 16 15 C -0.14 -2.20 10.05 -39.63 -0.40 -2.60 16 16 C -0.12 -1.93 10.04 -39.53 -0.40 -2.32 16 17 C -0.11 -1.98 6.14 -104.21 -0.64 -2.62 16 18 C -0.11 -1.73 6.51 -26.84 -0.17 -1.91 16 19 C 0.10 1.74 3.97 -25.31 -0.10 1.64 16 20 H 0.07 1.22 7.89 -51.93 -0.41 0.81 16 21 O -0.56 -9.16 13.41 -35.23 -0.47 -9.63 16 22 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 23 H 0.02 0.54 8.14 -51.92 -0.42 0.12 16 24 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.12 2.44 6.90 -52.49 -0.36 2.07 16 26 H 0.12 1.68 8.06 -52.49 -0.42 1.26 16 27 H 0.11 1.47 8.06 -52.48 -0.42 1.05 16 28 H 0.11 1.52 8.06 -52.49 -0.42 1.09 16 29 H 0.07 0.94 8.11 -51.93 -0.42 0.52 16 30 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 31 H 0.37 3.98 9.12 45.56 0.42 4.39 16 LS Contribution 262.77 15.07 3.96 3.96 Total: -1.00 -31.45 262.77 -7.75 -39.19 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: -3.19 Total: 3.07 kcal Atomic # 6 Polarization: -23.55 SS G_CDS: -3.76 Total: -27.31 kcal Atomic # 7 Polarization: -26.69 SS G_CDS: 0.74 Total: -25.95 kcal Atomic # 8 Polarization: -9.16 SS G_CDS: -0.47 Total: -9.63 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -31.45 -7.75 -39.19 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000196404746.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.351 kcal (2) G-P(sol) polarization free energy of solvation -31.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds