Wall clock time and date at job start Mon Mar 30 2020 02:34:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47168 * 180.02562 * 9 7 2 11 11 H 1.09000 * 110.26437 * 304.37804 * 10 9 7 12 12 C 1.51368 * 110.30324 * 66.45501 * 10 9 7 13 13 C 1.38502 * 130.38998 * 281.76069 * 12 10 9 14 14 C 1.38106 * 120.21236 * 179.97438 * 13 12 10 15 15 C 1.38244 * 119.93869 * 0.02562 * 14 13 12 16 16 C 1.38109 * 119.93362 * 359.97438 * 15 14 13 17 17 C 1.38210 * 109.75973 * 101.74131 * 12 10 9 18 18 C 1.51369 * 109.76339 * 359.97438 * 17 12 10 19 19 C 1.54344 * 110.30282 * 182.20190 * 10 9 7 20 20 H 1.08998 * 110.82865 * 25.64741 * 19 10 9 21 21 O 1.42905 * 110.82134 * 149.19663 * 19 10 9 22 22 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 23 23 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 24 24 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 25 25 H 1.07997 * 119.89357 * 359.95760 * 13 12 10 26 26 H 1.08001 * 120.02889 * 179.97438 * 14 13 12 27 27 H 1.08006 * 120.03748 * 180.02562 * 15 14 13 28 28 H 1.07993 * 119.89337 * 179.97438 * 16 15 14 29 29 H 1.08994 * 110.30361 * 136.11337 * 18 17 12 30 30 H 1.08997 * 110.30466 * 258.17418 * 18 17 12 31 31 H 0.96695 * 113.99824 * 179.97438 * 21 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 1 2.9294 -3.5739 -0.8445 12 6 3.0176 -3.6928 1.3009 13 6 4.0868 -2.9232 1.7284 14 6 4.6387 -3.1327 2.9770 15 6 4.1233 -4.1139 3.8033 16 6 3.0571 -4.8824 3.3788 17 6 2.5020 -4.6735 2.1272 18 6 1.3475 -5.3686 1.4379 19 6 1.4938 -5.0091 -0.0562 20 1 0.5162 -4.8886 -0.5230 21 8 2.2680 -5.9947 -0.7427 22 1 -0.4850 0.8401 0.0004 23 1 0.6247 -2.5571 0.8897 24 1 0.6240 -2.5568 -0.8903 25 1 4.4905 -2.1570 1.0832 26 1 5.4726 -2.5311 3.3071 27 1 4.5533 -4.2788 4.7802 28 1 2.6553 -5.6489 4.0247 29 1 1.4189 -6.4474 1.5757 30 1 0.3980 -5.0003 1.8263 31 1 1.8391 -6.8592 -0.8039 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000196404746.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:54 Heat of formation + Delta-G solvation = -58.330480 kcal Electronic energy + Delta-G solvation = -14514.214804 eV Core-core repulsion = 12144.788023 eV Total energy + Delta-G solvation = -2369.426781 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.21777 -38.06253 -35.86807 -34.50521 -32.62944 -30.57816 -29.00463 -27.37637 -24.23047 -23.32455 -21.83886 -20.89476 -18.71493 -17.86067 -17.10796 -16.52975 -16.24783 -15.99880 -15.47065 -14.61413 -14.48213 -14.21207 -13.86266 -13.70370 -13.27940 -13.06344 -12.83882 -12.61519 -12.45423 -11.86660 -11.83238 -11.71661 -11.32436 -11.14395 -10.88117 -10.54781 -9.56976 -9.28209 -8.19804 -6.27776 0.58141 0.64029 1.37526 1.40102 1.47436 2.39564 2.98568 3.14318 3.30851 3.60775 3.69784 4.13998 4.24171 4.27458 4.32924 4.62908 4.71175 4.78035 4.80880 4.83867 4.98708 5.10566 5.24433 5.32651 5.46436 5.59642 5.65512 5.72363 5.80775 5.95210 6.23824 6.26835 6.83378 6.98275 7.39351 8.92185 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.026324 B = 0.010610 C = 0.008468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.408710 B = 2638.464069 C = 3305.835129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.004 3.996 3 Si 0.956 3.044 4 H -0.282 1.282 5 H -0.269 1.269 6 H -0.268 1.268 7 C -0.527 4.527 8 H 0.059 0.941 9 C 0.050 3.950 10 C -0.043 4.043 11 H 0.055 0.945 12 C -0.080 4.080 13 C -0.121 4.121 14 C -0.132 4.132 15 C -0.129 4.129 16 C -0.116 4.116 17 C -0.118 4.118 18 C -0.099 4.099 19 C 0.107 3.893 20 H 0.075 0.925 21 O -0.573 6.573 22 H 0.263 0.737 23 H -0.004 1.004 24 H -0.001 1.001 25 H 0.104 0.896 26 H 0.141 0.859 27 H 0.154 0.846 28 H 0.145 0.855 29 H 0.105 0.895 30 H 0.086 0.914 31 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.986 -10.947 5.658 13.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.194 4.194 3 Si 0.780 3.220 4 H -0.207 1.207 5 H -0.194 1.194 6 H -0.193 1.193 7 C -0.565 4.565 8 H 0.077 0.923 9 C 0.013 3.987 10 C -0.062 4.062 11 H 0.073 0.927 12 C -0.080 4.080 13 C -0.139 4.139 14 C -0.150 4.150 15 C -0.147 4.147 16 C -0.134 4.134 17 C -0.118 4.118 18 C -0.136 4.136 19 C 0.048 3.952 20 H 0.093 0.907 21 O -0.381 6.381 22 H 0.071 0.929 23 H 0.015 0.985 24 H 0.017 0.983 25 H 0.122 0.878 26 H 0.159 0.841 27 H 0.171 0.829 28 H 0.163 0.837 29 H 0.124 0.876 30 H 0.104 0.896 31 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 5.250 -10.346 5.603 12.884 hybrid contribution -0.267 0.873 -0.268 0.952 sum 4.983 -9.473 5.334 11.959 Atomic orbital electron populations 1.70070 1.07548 1.27653 1.51976 1.25848 0.95695 1.02855 0.95005 0.85639 0.78472 0.78761 0.79091 1.20743 1.19392 1.19282 1.21507 0.93388 0.91756 1.49872 0.92300 1.18825 0.93171 0.91693 0.95041 1.20726 0.96681 0.94177 0.94584 0.92681 1.20584 0.95191 0.95603 0.96669 1.20839 0.96712 0.98835 0.97540 1.21291 1.00959 0.99232 0.93476 1.21320 0.96948 0.95913 1.00520 1.20885 0.96965 1.00916 0.94627 1.20840 0.98014 0.97634 0.95347 1.21705 0.96272 1.01459 0.94206 1.22443 0.93612 0.87760 0.91403 0.90741 1.86499 1.48618 1.24392 1.78627 0.92851 0.98539 0.98277 0.87782 0.84141 0.82857 0.83740 0.87631 0.89600 0.75553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.95 13.29 21.45 0.28 -56.66 16 2 C 0.00 0.21 5.46 84.66 0.46 0.67 16 3 Si 0.96 45.10 29.54 68.60 2.03 47.13 16 4 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 5 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 6 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 7 C -0.53 -30.36 8.46 25.60 0.22 -30.14 16 8 H 0.06 3.30 6.09 -2.91 -0.02 3.28 16 9 C 0.05 2.67 4.37 29.85 0.13 2.80 16 10 C -0.04 -1.94 2.61 -10.87 -0.03 -1.96 16 11 H 0.05 2.63 8.11 -2.39 -0.02 2.61 16 12 C -0.08 -3.41 5.15 -19.60 -0.10 -3.51 16 13 C -0.12 -4.94 9.31 22.30 0.21 -4.73 16 14 C -0.13 -4.33 10.05 22.24 0.22 -4.10 16 15 C -0.13 -3.69 10.05 22.24 0.22 -3.47 16 16 C -0.12 -3.48 10.04 22.30 0.22 -3.26 16 17 C -0.12 -4.25 6.14 -19.60 -0.12 -4.37 16 18 C -0.10 -3.06 6.51 30.52 0.20 -2.86 16 19 C 0.11 3.74 3.97 31.51 0.13 3.87 16 20 H 0.07 2.54 7.89 -2.39 -0.02 2.52 16 21 O -0.57 -17.96 13.41 -148.98 -2.00 -19.96 16 22 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 23 H 0.00 -0.22 8.14 -2.38 -0.02 -0.24 16 24 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 25 H 0.10 4.40 6.90 -2.91 -0.02 4.38 16 26 H 0.14 3.76 8.06 -2.91 -0.02 3.73 16 27 H 0.15 3.14 8.06 -2.91 -0.02 3.12 16 28 H 0.14 3.28 8.06 -2.91 -0.02 3.25 16 29 H 0.11 2.46 8.11 -2.39 -0.02 2.44 16 30 H 0.09 2.62 8.14 -2.39 -0.02 2.61 16 31 H 0.39 7.55 9.12 -74.06 -0.68 6.88 16 Total: -1.00 -69.53 262.77 2.53 -67.00 By element: Atomic # 1 Polarization: 13.11 SS G_CDS: 0.45 Total: 13.56 kcal Atomic # 6 Polarization: -52.83 SS G_CDS: 1.76 Total: -51.07 kcal Atomic # 7 Polarization: -56.95 SS G_CDS: 0.28 Total: -56.66 kcal Atomic # 8 Polarization: -17.96 SS G_CDS: -2.00 Total: -19.96 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.13 kcal Total: -69.53 2.53 -67.00 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000196404746.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.670 kcal (2) G-P(sol) polarization free energy of solvation -69.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds