Wall clock time and date at job start Mon Mar 30 2020 03:09:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50696 * 109.43381 * 2 1 4 4 H 1.07998 * 120.00324 * 0.80064 * 3 2 1 5 5 C 1.37879 * 120.00147 * 180.81044 * 3 2 1 6 6 N 1.31521 * 119.99840 * 6.44631 * 5 3 2 7 7 Si 1.86796 * 120.00179 * 186.44426 * 5 3 2 8 8 H 1.48506 * 109.47191 * 60.00060 * 7 5 3 9 9 H 1.48501 * 109.47238 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.47579 * 300.00217 * 7 5 3 11 11 C 1.53078 * 109.43550 * 119.90555 * 2 1 3 12 12 C 1.53408 * 108.29577 * 71.85908 * 11 2 1 13 13 O 1.42827 * 108.40936 * 64.68840 * 12 11 2 14 14 C 1.35859 * 117.85456 * 310.88060 * 13 12 11 15 15 C 1.39139 * 118.48692 * 196.94634 * 14 13 12 16 16 C 1.37964 * 120.21309 * 180.39469 * 15 14 13 17 17 C 1.38287 * 119.96213 * 359.97438 * 16 15 14 18 18 C 1.38111 * 119.98253 * 359.91600 * 17 16 15 19 19 C 1.38377 * 121.81489 * 17.16120 * 14 13 12 20 20 H 1.08999 * 109.47305 * 300.08736 * 1 2 3 21 21 H 1.08999 * 109.46893 * 60.09328 * 1 2 3 22 22 H 1.09004 * 109.46638 * 180.08929 * 1 2 3 23 23 H 0.96999 * 119.99735 * 179.97438 * 6 5 3 24 24 H 1.08997 * 109.70049 * 312.15884 * 11 2 1 25 25 H 1.08994 * 109.73369 * 191.57663 * 11 2 1 26 26 H 1.09002 * 109.68483 * 184.43013 * 12 11 2 27 27 H 1.09001 * 109.68596 * 304.94347 * 12 11 2 28 28 H 1.07997 * 119.89573 * 0.38919 * 15 14 13 29 29 H 1.08008 * 120.01989 * 179.97438 * 16 15 14 30 30 H 1.07995 * 120.01453 * 179.89564 * 17 16 15 31 31 H 1.07998 * 119.84270 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0314 1.4211 0.0000 4 1 1.3292 2.2415 0.0131 5 6 3.3867 1.6740 -0.0169 6 7 4.2389 0.6826 -0.1608 7 14 4.0125 3.4246 0.1646 8 1 3.5602 3.9797 1.4656 9 1 5.4967 3.4274 0.1150 10 1 3.4782 4.2586 -0.9418 11 6 2.0394 -0.7197 1.2513 12 6 1.7720 -2.2212 1.0857 13 8 2.5548 -2.7008 -0.0085 14 6 2.5075 -2.0064 -1.1752 15 6 2.9569 -2.6279 -2.3361 16 6 2.9326 -1.9529 -3.5391 17 6 2.4597 -0.6545 -3.5930 18 6 2.0107 -0.0351 -2.4431 19 6 2.0318 -0.7082 -1.2327 20 1 -0.3634 0.5152 0.8892 21 1 -0.3633 0.5124 -0.8908 22 1 -0.3633 -1.0277 0.0016 23 1 5.1923 0.8606 -0.1731 24 1 1.5121 -0.3473 2.1296 25 1 3.1096 -0.5475 1.3649 26 1 2.0545 -2.7472 1.9976 27 1 0.7142 -2.3853 0.8802 28 1 3.3261 -3.6420 -2.2954 29 1 3.2826 -2.4382 -4.4382 30 1 2.4419 -0.1247 -4.5339 31 1 1.6415 0.9788 -2.4878 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000200462755.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:05 Heat of formation + Delta-G solvation = -21.149591 kcal Electronic energy + Delta-G solvation = -15276.619886 eV Core-core repulsion = 12908.805390 eV Total energy + Delta-G solvation = -2367.814497 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.69202 -36.36177 -35.12638 -31.64035 -29.53283 -29.18522 -27.33692 -25.27110 -23.01320 -22.04668 -20.90154 -18.23517 -16.88808 -16.29725 -15.23187 -15.03383 -14.56776 -13.88785 -13.21666 -12.99878 -12.69508 -12.44383 -12.41339 -11.61117 -11.31647 -11.16010 -10.94543 -10.78224 -10.65614 -10.30866 -10.21379 -10.04191 -9.43036 -9.34286 -8.71461 -8.46840 -7.56457 -6.98982 -5.99118 -4.12905 2.54287 2.58344 3.28189 3.34655 3.36018 4.34149 4.39077 4.92462 5.22475 5.82075 5.89587 5.95490 5.99125 6.07647 6.14172 6.27399 6.40875 6.46508 6.61742 6.70655 6.71654 6.90709 7.08031 7.18660 7.19322 7.44578 7.59235 7.64785 7.80676 7.96458 8.03317 8.33850 8.56830 8.87986 9.52383 11.00574 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.026754 B = 0.014503 C = 0.011989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.310351 B = 1930.118329 C = 2334.903185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.099 3.901 3 C -0.517 4.517 4 H 0.059 0.941 5 C 0.072 3.928 6 N -0.865 5.865 7 Si 0.887 3.113 8 H -0.278 1.278 9 H -0.288 1.288 10 H -0.277 1.277 11 C -0.144 4.144 12 C 0.059 3.941 13 O -0.326 6.326 14 C 0.124 3.876 15 C -0.166 4.166 16 C -0.119 4.119 17 C -0.170 4.170 18 C -0.063 4.063 19 C -0.056 4.056 20 H 0.046 0.954 21 H 0.044 0.956 22 H 0.029 0.971 23 H 0.262 0.738 24 H 0.053 0.947 25 H 0.098 0.902 26 H 0.083 0.917 27 H 0.046 0.954 28 H 0.109 0.891 29 H 0.107 0.893 30 H 0.103 0.897 31 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.905 -3.533 -1.287 5.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.099 3.901 3 C -0.555 4.555 4 H 0.077 0.923 5 C -0.133 4.133 6 N -0.500 5.500 7 Si 0.715 3.285 8 H -0.203 1.203 9 H -0.214 1.214 10 H -0.203 1.203 11 C -0.182 4.182 12 C -0.016 4.016 13 O -0.241 6.241 14 C 0.080 3.920 15 C -0.185 4.185 16 C -0.137 4.137 17 C -0.188 4.188 18 C -0.081 4.081 19 C -0.057 4.057 20 H 0.065 0.935 21 H 0.064 0.936 22 H 0.048 0.952 23 H 0.072 0.928 24 H 0.072 0.928 25 H 0.116 0.884 26 H 0.101 0.899 27 H 0.065 0.935 28 H 0.127 0.873 29 H 0.125 0.875 30 H 0.121 0.879 31 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -3.585 -3.746 -1.249 5.333 hybrid contribution 0.572 1.192 0.153 1.331 sum -3.013 -2.554 -1.096 4.099 Atomic orbital electron populations 1.21900 0.97512 0.98633 1.00551 1.17147 0.90075 0.94706 0.88202 1.20878 0.91503 0.90218 1.52855 0.92287 1.24960 0.97073 0.96649 0.94603 1.69958 1.02273 1.30589 1.47180 0.86745 0.77725 0.85381 0.78694 1.20314 1.21360 1.20269 1.22323 1.05149 0.91537 0.99184 1.22979 0.93563 0.97560 0.87517 1.85817 1.66197 1.52373 1.19710 1.18679 0.97785 0.90843 0.84703 1.20259 1.07267 0.99916 0.91008 1.20485 1.01910 0.95193 0.96148 1.20825 1.04388 0.95583 0.98023 1.20797 0.97329 0.98737 0.91261 1.20146 0.98244 0.90577 0.96745 0.93530 0.93642 0.95239 0.92815 0.92835 0.88360 0.89863 0.93549 0.87320 0.87487 0.87878 0.86480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.62 8.18 37.16 0.30 -2.31 16 2 C 0.10 2.33 0.39 -156.74 -0.06 2.27 16 3 C -0.52 -13.27 6.77 -34.44 -0.23 -13.50 16 4 H 0.06 1.51 7.75 -52.49 -0.41 1.10 16 5 C 0.07 1.88 4.92 -17.82 -0.09 1.79 16 6 N -0.86 -23.79 10.57 55.43 0.59 -23.21 16 7 Si 0.89 20.66 29.54 -169.99 -5.02 15.64 16 8 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 9 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 10 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 11 C -0.14 -3.25 4.80 -26.48 -0.13 -3.38 16 12 C 0.06 1.18 6.96 37.37 0.26 1.44 16 13 O -0.33 -7.44 10.27 -19.30 -0.20 -7.64 16 14 C 0.12 2.93 6.47 -39.20 -0.25 2.67 16 15 C -0.17 -3.54 9.94 -39.35 -0.39 -3.93 16 16 C -0.12 -2.36 10.04 -39.66 -0.40 -2.75 16 17 C -0.17 -3.50 10.04 -39.61 -0.40 -3.90 16 18 C -0.06 -1.45 8.92 -39.53 -0.35 -1.80 16 19 C -0.06 -1.33 3.27 -104.44 -0.34 -1.68 16 20 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 21 H 0.04 0.90 8.12 -51.93 -0.42 0.48 16 22 H 0.03 0.55 6.65 -51.93 -0.35 0.20 16 23 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 24 H 0.05 1.11 8.10 -51.93 -0.42 0.69 16 25 H 0.10 2.55 6.21 -51.93 -0.32 2.22 16 26 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 27 H 0.05 0.86 6.57 -51.93 -0.34 0.51 16 28 H 0.11 2.08 8.06 -52.49 -0.42 1.66 16 29 H 0.11 1.75 8.06 -52.48 -0.42 1.33 16 30 H 0.10 1.83 8.06 -52.49 -0.42 1.41 16 31 H 0.12 2.70 7.36 -52.49 -0.39 2.32 16 LS Contribution 251.94 15.07 3.80 3.80 Total: -1.00 -27.97 251.94 -6.81 -34.78 By element: Atomic # 1 Polarization: 5.61 SS G_CDS: -3.89 Total: 1.72 kcal Atomic # 6 Polarization: -23.01 SS G_CDS: -2.08 Total: -25.09 kcal Atomic # 7 Polarization: -23.79 SS G_CDS: 0.59 Total: -23.21 kcal Atomic # 8 Polarization: -7.44 SS G_CDS: -0.20 Total: -7.64 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -27.97 -6.81 -34.78 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000200462755.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.626 kcal (2) G-P(sol) polarization free energy of solvation -27.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds