Wall clock time and date at job start Mon Mar 30 2020 03:18:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53008 * 109.46963 * 2 1 4 4 C 1.50692 * 109.47498 * 120.00193 * 2 1 3 5 5 C 1.37904 * 120.08400 * 304.21976 * 4 2 1 6 6 C 1.38418 * 120.16186 * 179.72253 * 5 4 2 7 7 C 1.38471 * 120.30744 * 0.28091 * 6 5 4 8 8 C 1.37866 * 120.15555 * 359.97438 * 7 6 5 9 9 C 1.39729 * 120.07807 * 124.49092 * 4 2 1 10 10 C 1.47822 * 120.15183 * 0.02562 * 9 4 2 11 11 O 1.21768 * 119.99638 * 255.94575 * 10 9 4 12 12 C 1.41799 * 120.00322 * 75.95020 * 10 9 4 13 13 H 1.08000 * 120.00140 * 7.12232 * 12 10 9 14 14 C 1.40351 * 120.00003 * 187.12418 * 12 10 9 15 15 N 1.30533 * 120.00070 * 7.07141 * 14 12 10 16 16 Si 1.86801 * 119.99956 * 187.06797 * 14 12 10 17 17 H 1.48500 * 109.47193 * 84.99822 * 16 14 12 18 18 H 1.48509 * 109.46912 * 204.99290 * 16 14 12 19 19 H 1.48491 * 109.47342 * 324.99251 * 16 14 12 20 20 H 1.09005 * 109.46897 * 299.99475 * 1 2 3 21 21 H 1.09000 * 109.47628 * 59.99003 * 1 2 3 22 22 H 1.09000 * 109.47233 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.46731 * 240.00880 * 2 1 3 24 24 H 1.09005 * 109.46885 * 60.00518 * 3 2 1 25 25 H 1.08999 * 109.47113 * 179.97438 * 3 2 1 26 26 H 1.08996 * 109.47506 * 300.00492 * 3 2 1 27 27 H 1.08004 * 119.92177 * 0.02562 * 5 4 2 28 28 H 1.07996 * 119.84837 * 180.25640 * 6 5 4 29 29 H 1.07999 * 119.91832 * 179.97438 * 7 6 5 30 30 H 1.07997 * 120.07404 * 180.02562 * 8 7 6 31 31 H 0.96999 * 119.99770 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0324 -0.7104 1.2303 5 6 1.6302 -0.2937 2.4819 6 6 2.0861 -0.9486 3.6128 7 6 2.9530 -2.0222 3.4969 8 6 3.3675 -2.4463 2.2523 9 6 2.9114 -1.7894 1.1061 10 6 3.3521 -2.2378 -0.2317 11 8 2.8807 -3.2483 -0.7211 12 6 4.3240 -1.4914 -0.9452 13 1 4.8261 -0.6629 -0.4678 14 6 4.6334 -1.8291 -2.2718 15 7 3.9329 -2.7377 -2.8944 16 14 6.0478 -0.9784 -3.1467 17 1 7.3197 -1.6732 -2.8231 18 1 5.8198 -1.0210 -4.6135 19 1 6.1282 0.4352 -2.6991 20 1 -0.3633 0.5138 0.8901 21 1 -0.3634 0.5140 -0.8899 22 1 -0.3634 -1.0277 -0.0005 23 1 1.8932 -0.5137 -0.8901 24 1 1.6766 1.9564 0.8901 25 1 3.1299 1.4426 0.0005 26 1 1.6766 1.9565 -0.8899 27 1 0.9539 0.5428 2.5797 28 1 1.7646 -0.6206 4.5903 29 1 3.3051 -2.5284 4.3835 30 1 4.0433 -3.2840 2.1633 31 1 4.1466 -2.9709 -3.8114 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000205613603.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:13 Heat of formation + Delta-G solvation = -38.986483 kcal Electronic energy + Delta-G solvation = -14559.843303 eV Core-core repulsion = 12191.255341 eV Total energy + Delta-G solvation = -2368.587962 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.99339 -36.19566 -34.69812 -32.69091 -30.27762 -29.13386 -26.82317 -26.55025 -22.76783 -22.69281 -19.76227 -19.10133 -16.78167 -15.77795 -15.15068 -14.80948 -14.17776 -13.43158 -13.40179 -13.14457 -12.95959 -12.67673 -11.94053 -11.73343 -11.69270 -11.43681 -11.27649 -11.13306 -10.83185 -10.57816 -10.42686 -10.29491 -9.92746 -9.88533 -8.97316 -8.12911 -7.83480 -7.48951 -6.35518 -4.92181 2.06356 2.09060 3.03632 3.12439 3.15383 4.00263 4.13023 4.49363 5.29784 5.36224 5.45750 5.62640 5.69978 5.79964 5.81454 6.07303 6.10386 6.14381 6.25480 6.28230 6.44583 6.54107 6.71928 6.78375 6.84318 7.01198 7.11223 7.21742 7.22900 7.53671 7.72965 8.07275 8.76605 8.80034 10.26744 10.47708 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.028348 B = 0.010669 C = 0.009382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.488808 B = 2623.716894 C = 2983.674838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.063 4.063 3 C -0.134 4.134 4 C -0.058 4.058 5 C -0.123 4.123 6 C -0.140 4.140 7 C -0.132 4.132 8 C -0.107 4.107 9 C -0.085 4.085 10 C 0.399 3.601 11 O -0.539 6.539 12 C -0.521 4.521 13 H 0.071 0.929 14 C 0.085 3.915 15 N -0.741 5.741 16 Si 0.903 3.097 17 H -0.268 1.268 18 H -0.277 1.277 19 H -0.261 1.261 20 H 0.048 0.952 21 H 0.052 0.948 22 H 0.053 0.947 23 H 0.099 0.901 24 H 0.045 0.955 25 H 0.059 0.941 26 H 0.051 0.949 27 H 0.112 0.888 28 H 0.110 0.890 29 H 0.111 0.889 30 H 0.116 0.884 31 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.078 6.603 5.997 9.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.082 4.082 3 C -0.191 4.191 4 C -0.058 4.058 5 C -0.141 4.141 6 C -0.158 4.158 7 C -0.150 4.150 8 C -0.126 4.126 9 C -0.086 4.086 10 C 0.294 3.706 11 O -0.428 6.428 12 C -0.552 4.552 13 H 0.089 0.911 14 C -0.138 4.138 15 N -0.369 5.369 16 Si 0.727 3.273 17 H -0.193 1.193 18 H -0.202 1.202 19 H -0.185 1.185 20 H 0.067 0.933 21 H 0.071 0.929 22 H 0.072 0.928 23 H 0.118 0.882 24 H 0.064 0.936 25 H 0.078 0.922 26 H 0.070 0.930 27 H 0.130 0.870 28 H 0.128 0.872 29 H 0.129 0.871 30 H 0.134 0.866 31 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -2.382 6.005 5.635 8.572 hybrid contribution 0.780 0.480 -0.203 0.938 sum -1.602 6.484 5.432 8.609 Atomic orbital electron populations 1.21822 0.95458 1.01599 1.00713 1.20170 0.94733 0.95892 0.97373 1.21755 1.01730 0.95214 1.00435 1.19876 0.96666 0.95090 0.94218 1.20812 1.00937 1.00146 0.92252 1.20969 0.99713 0.97455 0.97677 1.20944 0.99248 0.97881 0.96974 1.21178 1.00136 0.99542 0.91706 1.21705 0.94501 0.93656 0.98735 1.18141 0.83688 0.85983 0.82824 1.90535 1.57464 1.26032 1.68777 1.20816 1.21590 1.15490 0.97340 0.91059 1.25960 0.96251 0.94012 0.97609 1.69911 1.33271 1.22960 1.10763 0.86434 0.81702 0.80718 0.78417 1.19274 1.20221 1.18526 0.93319 0.92921 0.92774 0.88235 0.93581 0.92196 0.93032 0.86981 0.87215 0.87051 0.86616 0.91404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.33 8.96 37.16 0.33 -2.00 16 2 C -0.06 -1.25 2.90 -91.77 -0.27 -1.52 16 3 C -0.13 -2.25 9.05 37.16 0.34 -1.91 16 4 C -0.06 -1.22 4.82 -104.19 -0.50 -1.72 16 5 C -0.12 -2.19 8.73 -39.64 -0.35 -2.54 16 6 C -0.14 -2.33 10.05 -39.43 -0.40 -2.73 16 7 C -0.13 -2.35 10.03 -39.63 -0.40 -2.75 16 8 C -0.11 -2.29 9.79 -39.15 -0.38 -2.68 16 9 C -0.08 -2.03 5.52 -104.85 -0.58 -2.61 16 10 C 0.40 11.26 4.81 -34.30 -0.17 11.09 16 11 O -0.54 -17.32 15.75 5.13 0.08 -17.24 16 12 C -0.52 -14.28 8.63 -37.43 -0.32 -14.61 16 13 H 0.07 1.85 7.86 -52.49 -0.41 1.44 16 14 C 0.08 2.27 5.48 -17.31 -0.09 2.17 16 15 N -0.74 -21.08 11.82 55.57 0.66 -20.43 16 16 Si 0.90 19.30 29.57 -169.99 -5.03 14.27 16 17 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 18 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 19 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 20 H 0.05 0.71 7.17 -51.93 -0.37 0.34 16 21 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 22 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 23 H 0.10 2.37 6.05 -51.93 -0.31 2.05 16 24 H 0.05 0.67 7.65 -51.93 -0.40 0.28 16 25 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 26 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.11 1.69 7.10 -52.48 -0.37 1.32 16 28 H 0.11 1.47 8.06 -52.49 -0.42 1.05 16 29 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 30 H 0.12 2.41 8.06 -52.49 -0.42 1.99 16 31 H 0.27 7.04 8.29 -40.82 -0.34 6.70 16 LS Contribution 268.08 15.07 4.04 4.04 Total: -1.00 -31.47 268.08 -6.99 -38.46 By element: Atomic # 1 Polarization: 6.64 SS G_CDS: -3.96 Total: 2.68 kcal Atomic # 6 Polarization: -19.01 SS G_CDS: -2.78 Total: -21.79 kcal Atomic # 7 Polarization: -21.08 SS G_CDS: 0.66 Total: -20.43 kcal Atomic # 8 Polarization: -17.32 SS G_CDS: 0.08 Total: -17.24 kcal Atomic # 14 Polarization: 19.30 SS G_CDS: -5.03 Total: 14.27 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -31.47 -6.99 -38.46 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000205613603.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.526 kcal (2) G-P(sol) polarization free energy of solvation -31.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds