Wall clock time and date at job start Mon Mar 30 2020 03:18:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53008 * 109.46963 * 2 1 4 4 C 1.50692 * 109.47498 * 120.00193 * 2 1 3 5 5 C 1.37904 * 120.08400 * 304.21976 * 4 2 1 6 6 C 1.38418 * 120.16186 * 179.72253 * 5 4 2 7 7 C 1.38471 * 120.30744 * 0.28091 * 6 5 4 8 8 C 1.37866 * 120.15555 * 359.97438 * 7 6 5 9 9 C 1.39729 * 120.07807 * 124.49092 * 4 2 1 10 10 C 1.47822 * 120.15183 * 0.02562 * 9 4 2 11 11 O 1.21768 * 119.99638 * 255.94575 * 10 9 4 12 12 C 1.41799 * 120.00322 * 75.95020 * 10 9 4 13 13 H 1.08000 * 120.00140 * 7.12232 * 12 10 9 14 14 C 1.40351 * 120.00003 * 187.12418 * 12 10 9 15 15 N 1.30533 * 120.00070 * 7.07141 * 14 12 10 16 16 Si 1.86801 * 119.99956 * 187.06797 * 14 12 10 17 17 H 1.48500 * 109.47193 * 84.99822 * 16 14 12 18 18 H 1.48509 * 109.46912 * 204.99290 * 16 14 12 19 19 H 1.48491 * 109.47342 * 324.99251 * 16 14 12 20 20 H 1.09005 * 109.46897 * 299.99475 * 1 2 3 21 21 H 1.09000 * 109.47628 * 59.99003 * 1 2 3 22 22 H 1.09000 * 109.47233 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.46731 * 240.00880 * 2 1 3 24 24 H 1.09005 * 109.46885 * 60.00518 * 3 2 1 25 25 H 1.08999 * 109.47113 * 179.97438 * 3 2 1 26 26 H 1.08996 * 109.47506 * 300.00492 * 3 2 1 27 27 H 1.08004 * 119.92177 * 0.02562 * 5 4 2 28 28 H 1.07996 * 119.84837 * 180.25640 * 6 5 4 29 29 H 1.07999 * 119.91832 * 179.97438 * 7 6 5 30 30 H 1.07997 * 120.07404 * 180.02562 * 8 7 6 31 31 H 0.96999 * 119.99770 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0324 -0.7104 1.2303 5 6 1.6302 -0.2937 2.4819 6 6 2.0861 -0.9486 3.6128 7 6 2.9530 -2.0222 3.4969 8 6 3.3675 -2.4463 2.2523 9 6 2.9114 -1.7894 1.1061 10 6 3.3521 -2.2378 -0.2317 11 8 2.8807 -3.2483 -0.7211 12 6 4.3240 -1.4914 -0.9452 13 1 4.8261 -0.6629 -0.4678 14 6 4.6334 -1.8291 -2.2718 15 7 3.9329 -2.7377 -2.8944 16 14 6.0478 -0.9784 -3.1467 17 1 7.3197 -1.6732 -2.8231 18 1 5.8198 -1.0210 -4.6135 19 1 6.1282 0.4352 -2.6991 20 1 -0.3633 0.5138 0.8901 21 1 -0.3634 0.5140 -0.8899 22 1 -0.3634 -1.0277 -0.0005 23 1 1.8932 -0.5137 -0.8901 24 1 1.6766 1.9564 0.8901 25 1 3.1299 1.4426 0.0005 26 1 1.6766 1.9565 -0.8899 27 1 0.9539 0.5428 2.5797 28 1 1.7646 -0.6206 4.5903 29 1 3.3051 -2.5284 4.3835 30 1 4.0433 -3.2840 2.1633 31 1 4.1466 -2.9709 -3.8114 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000205613603.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:12 Heat of formation + Delta-G solvation = -57.863294 kcal Electronic energy + Delta-G solvation = -14560.661863 eV Core-core repulsion = 12191.255341 eV Total energy + Delta-G solvation = -2369.406522 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.59789 -38.24577 -36.15179 -34.81228 -31.93898 -30.61548 -28.84450 -27.92814 -24.51262 -24.15567 -21.55402 -20.65221 -18.69857 -17.68526 -16.77278 -16.41014 -15.83757 -15.23691 -14.86747 -14.78404 -14.48602 -14.25523 -13.76624 -13.40483 -13.17089 -12.96285 -12.84473 -12.80909 -12.56501 -12.19303 -12.11320 -11.99051 -11.46323 -11.40666 -11.01828 -9.67076 -9.61249 -9.37608 -8.40946 -7.11928 0.53549 0.59030 1.31002 1.33762 1.49922 2.10958 2.17793 2.96224 3.33672 3.87565 4.01521 4.21923 4.25478 4.34579 4.39022 4.62622 4.67155 4.76276 4.83373 4.97684 5.00299 5.13279 5.16571 5.23540 5.31827 5.45570 5.48071 5.65693 5.67841 5.93042 5.97362 6.24795 6.67341 6.70897 8.17696 8.43452 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.028348 B = 0.010669 C = 0.009382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.488808 B = 2623.716894 C = 2983.674838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.067 4.067 3 C -0.126 4.126 4 C -0.070 4.070 5 C -0.119 4.119 6 C -0.122 4.122 7 C -0.126 4.126 8 C -0.130 4.130 9 C -0.134 4.134 10 C 0.385 3.615 11 O -0.601 6.601 12 C -0.540 4.540 13 H 0.078 0.922 14 C 0.031 3.969 15 N -0.788 5.788 16 Si 0.988 3.012 17 H -0.259 1.259 18 H -0.264 1.264 19 H -0.247 1.247 20 H 0.082 0.918 21 H 0.066 0.934 22 H 0.030 0.970 23 H 0.042 0.958 24 H 0.077 0.923 25 H 0.039 0.961 26 H 0.065 0.935 27 H 0.151 0.849 28 H 0.160 0.840 29 H 0.148 0.852 30 H 0.101 0.899 31 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.212 9.367 8.030 12.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.086 4.086 3 C -0.183 4.183 4 C -0.071 4.071 5 C -0.136 4.136 6 C -0.140 4.140 7 C -0.144 4.144 8 C -0.148 4.148 9 C -0.136 4.136 10 C 0.284 3.716 11 O -0.495 6.495 12 C -0.571 4.571 13 H 0.096 0.904 14 C -0.188 4.188 15 N -0.417 5.417 16 Si 0.806 3.194 17 H -0.184 1.184 18 H -0.188 1.188 19 H -0.170 1.170 20 H 0.101 0.899 21 H 0.085 0.915 22 H 0.049 0.951 23 H 0.060 0.940 24 H 0.096 0.904 25 H 0.059 0.941 26 H 0.084 0.916 27 H 0.168 0.832 28 H 0.177 0.823 29 H 0.166 0.834 30 H 0.119 0.881 31 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -2.517 8.785 7.688 11.942 hybrid contribution 0.773 -0.389 -0.750 1.146 sum -1.743 8.396 6.938 11.030 Atomic orbital electron populations 1.21777 0.93153 1.00849 1.03096 1.20141 0.96664 0.96996 0.94774 1.21698 1.00458 0.93457 1.02698 1.20079 0.96298 0.94421 0.96257 1.21200 1.00699 1.00851 0.90871 1.21552 0.97352 0.95601 0.99488 1.21312 0.98654 0.98130 0.96286 1.21243 1.01008 0.99666 0.92924 1.21411 0.98159 0.96827 0.97155 1.18720 0.83076 0.85017 0.84792 1.90458 1.59484 1.28528 1.71006 1.21185 1.21859 1.15709 0.98354 0.90394 1.27167 0.99161 0.94392 0.98127 1.70044 1.35389 1.24678 1.11594 0.85176 0.77108 0.79787 0.77314 1.18397 1.18797 1.17010 0.89933 0.91460 0.95091 0.93955 0.90382 0.94149 0.91617 0.83177 0.82262 0.83383 0.88065 0.90602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.27 8.96 71.98 0.64 -3.62 16 2 C -0.07 -2.67 2.90 -11.54 -0.03 -2.70 16 3 C -0.13 -4.03 9.05 71.98 0.65 -3.37 16 4 C -0.07 -2.92 4.82 -19.59 -0.09 -3.02 16 5 C -0.12 -3.77 8.73 22.23 0.19 -3.57 16 6 C -0.12 -3.49 10.05 22.37 0.22 -3.26 16 7 C -0.13 -4.14 10.03 22.24 0.22 -3.91 16 8 C -0.13 -5.69 9.79 22.55 0.22 -5.47 16 9 C -0.13 -6.74 5.52 -20.01 -0.11 -6.85 16 10 C 0.38 23.32 4.81 25.69 0.12 23.44 16 11 O -0.60 -41.87 15.75 -4.57 -0.07 -41.94 16 12 C -0.54 -31.30 8.63 23.67 0.20 -31.10 16 13 H 0.08 4.23 7.86 -2.91 -0.02 4.21 16 14 C 0.03 1.71 5.48 85.40 0.47 2.18 16 15 N -0.79 -47.38 11.82 21.89 0.26 -47.12 16 16 Si 0.99 40.32 29.57 68.60 2.03 42.35 16 17 H -0.26 -10.20 7.11 99.48 0.71 -9.50 16 18 H -0.26 -10.11 7.11 99.48 0.71 -9.41 16 19 H -0.25 -9.42 7.11 99.48 0.71 -8.71 16 20 H 0.08 2.09 7.17 -2.38 -0.02 2.08 16 21 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 22 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 23 H 0.04 2.15 6.05 -2.39 -0.01 2.13 16 24 H 0.08 1.98 7.65 -2.38 -0.02 1.96 16 25 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 26 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 27 H 0.15 3.61 7.10 -2.91 -0.02 3.59 16 28 H 0.16 3.07 8.06 -2.91 -0.02 3.05 16 29 H 0.15 3.72 8.06 -2.91 -0.02 3.70 16 30 H 0.10 4.51 8.06 -2.91 -0.02 4.49 16 31 H 0.28 15.20 8.29 -92.71 -0.77 14.43 16 Total: -1.00 -75.74 268.08 6.04 -69.70 By element: Atomic # 1 Polarization: 17.17 SS G_CDS: 1.11 Total: 18.28 kcal Atomic # 6 Polarization: -43.98 SS G_CDS: 2.72 Total: -41.26 kcal Atomic # 7 Polarization: -47.38 SS G_CDS: 0.26 Total: -47.12 kcal Atomic # 8 Polarization: -41.87 SS G_CDS: -0.07 Total: -41.94 kcal Atomic # 14 Polarization: 40.32 SS G_CDS: 2.03 Total: 42.35 kcal Total: -75.74 6.04 -69.70 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000205613603.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.832 kcal (2) G-P(sol) polarization free energy of solvation -75.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds