Wall clock time and date at job start Mon Mar 30 2020 02:43:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99650 * 2 1 4 4 H 1.48505 * 109.47046 * 269.99567 * 3 2 1 5 5 H 1.48492 * 109.47513 * 29.99955 * 3 2 1 6 6 H 1.48505 * 109.46962 * 150.00043 * 3 2 1 7 7 C 1.37872 * 120.00339 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00282 * 172.11848 * 7 2 1 9 9 C 1.50706 * 120.00033 * 352.11983 * 7 2 1 10 10 O 1.42897 * 115.54858 * 324.65379 * 9 7 2 11 11 C 1.42905 * 113.99955 * 279.05959 * 10 9 7 12 12 C 1.50702 * 109.47340 * 175.14262 * 11 10 9 13 13 C 1.38234 * 119.99344 * 90.00264 * 12 11 10 14 14 C 1.38239 * 119.99430 * 180.02562 * 13 12 11 15 15 C 1.38235 * 119.99938 * 359.95866 * 14 13 12 16 16 C 1.38232 * 120.00288 * 0.27530 * 15 14 13 17 17 C 1.38227 * 120.00063 * 270.02415 * 12 11 10 18 18 C 1.52999 * 117.51497 * 110.34734 * 9 7 2 19 19 C 1.52998 * 117.50158 * 178.97735 * 9 7 2 20 20 H 0.96995 * 120.00495 * 359.97438 * 1 2 3 21 21 H 1.09001 * 109.46377 * 55.15006 * 11 10 9 22 22 H 1.08998 * 109.47399 * 295.15234 * 11 10 9 23 23 H 1.08001 * 120.00613 * 0.02562 * 13 12 11 24 24 H 1.07999 * 119.99959 * 179.97438 * 14 13 12 25 25 H 1.08008 * 119.99533 * 179.97438 * 15 14 13 26 26 H 1.08001 * 119.99881 * 179.72615 * 16 15 14 27 27 H 1.08004 * 120.00737 * 0.02562 * 17 12 11 28 28 H 1.09006 * 117.49555 * 214.96808 * 18 9 7 29 29 H 1.08996 * 117.50609 * 359.97438 * 18 9 7 30 30 H 1.09001 * 117.49761 * 359.97438 * 19 9 7 31 31 H 1.09002 * 117.50046 * 145.00096 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0769 -1.1984 -0.1277 9 6 1.2618 -2.4929 0.1801 10 8 0.1402 -2.4444 1.0641 11 6 0.4869 -2.5270 2.4480 12 6 -0.7515 -2.3471 3.2877 13 6 -1.5070 -3.4468 3.6493 14 6 -2.6433 -3.2817 4.4191 15 6 -3.0234 -2.0172 4.8281 16 6 -2.2705 -0.9170 4.4625 17 6 -1.1320 -1.0825 3.6960 18 6 1.1691 -3.4269 -1.0282 19 6 2.0803 -3.7851 0.1475 20 1 -0.4850 0.8400 0.0004 21 1 1.2064 -1.7447 2.6895 22 1 0.9275 -3.5023 2.6546 23 1 -1.2097 -4.4349 3.3304 24 1 -3.2339 -4.1408 4.7013 25 1 -3.9114 -1.8882 5.4292 26 1 -2.5700 0.0714 4.7783 27 1 -0.5422 -0.2232 3.4129 28 1 0.2525 -4.0046 -1.1486 29 1 1.6449 -3.1020 -1.9534 30 1 3.1560 -3.6958 -0.0042 31 1 1.7633 -4.5983 0.8005 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214481763.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:16 Heat of formation + Delta-G solvation = 9.787127 kcal Electronic energy + Delta-G solvation = -14353.293168 eV Core-core repulsion = 11986.820188 eV Total energy + Delta-G solvation = -2366.472980 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.80058 -37.21208 -33.66445 -32.11238 -30.83440 -30.45526 -25.62054 -25.19679 -22.10918 -21.36217 -20.58293 -19.73890 -17.04746 -16.35534 -14.96199 -14.83381 -14.61832 -14.50722 -13.67037 -13.27945 -12.99961 -12.69681 -12.25726 -12.08957 -11.60361 -10.98206 -10.94415 -10.69986 -10.57963 -10.44532 -10.28016 -9.86988 -9.44850 -8.89471 -8.48425 -8.41035 -8.02650 -7.97185 -5.98973 -4.11146 1.76711 1.84716 3.26452 3.34177 3.37213 4.16215 4.37145 4.95332 5.09219 5.28385 5.32122 5.44151 5.55386 5.76705 5.91059 5.97486 6.16384 6.27499 6.33295 6.40474 6.50810 6.61687 6.64294 6.85230 6.90077 6.93192 7.08864 7.23550 7.28705 7.44644 7.78302 8.12516 8.74802 9.00073 9.55211 11.03377 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.026569 B = 0.010225 C = 0.007909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.612559 B = 2737.686167 C = 3539.444826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.838 5.838 2 C 0.083 3.917 3 Si 0.883 3.117 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.530 4.530 8 H 0.065 0.935 9 C 0.217 3.783 10 O -0.321 6.321 11 C 0.111 3.889 12 C -0.065 4.065 13 C -0.107 4.107 14 C -0.131 4.131 15 C -0.129 4.129 16 C -0.128 4.128 17 C -0.087 4.087 18 C -0.185 4.185 19 C -0.244 4.244 20 H 0.259 0.741 21 H 0.054 0.946 22 H 0.033 0.967 23 H 0.117 0.883 24 H 0.115 0.885 25 H 0.114 0.886 26 H 0.116 0.884 27 H 0.124 0.876 28 H 0.071 0.929 29 H 0.086 0.914 30 H 0.079 0.921 31 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.871 -3.530 7.750 8.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.471 5.471 2 C -0.125 4.125 3 Si 0.709 3.291 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.567 4.567 8 H 0.083 0.917 9 C 0.178 3.822 10 O -0.240 6.240 11 C 0.034 3.966 12 C -0.065 4.065 13 C -0.125 4.125 14 C -0.149 4.149 15 C -0.147 4.147 16 C -0.146 4.146 17 C -0.105 4.105 18 C -0.223 4.223 19 C -0.281 4.281 20 H 0.069 0.931 21 H 0.072 0.928 22 H 0.051 0.949 23 H 0.135 0.865 24 H 0.133 0.867 25 H 0.132 0.868 26 H 0.134 0.866 27 H 0.142 0.858 28 H 0.090 0.910 29 H 0.104 0.896 30 H 0.098 0.902 31 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -3.254 -3.390 7.688 9.010 hybrid contribution 0.629 0.800 -0.058 1.019 sum -2.625 -2.590 7.631 8.475 Atomic orbital electron populations 1.70161 1.05691 1.26147 1.45102 1.25021 0.94691 0.98789 0.93962 0.86762 0.80197 0.83730 0.78368 1.20461 1.20965 1.19696 1.20708 0.93260 0.89329 1.53397 0.91687 1.19371 0.85573 0.87842 0.89431 1.87973 1.30064 1.94052 1.11894 1.20936 0.92499 0.98895 0.84268 1.19910 0.97065 0.93155 0.96412 1.21046 0.94982 0.98563 0.97959 1.21015 0.97285 0.97041 0.99547 1.21025 0.99692 0.92974 1.01014 1.21096 0.95744 0.98413 0.99347 1.21142 0.96357 0.97171 0.95842 1.23084 0.99587 1.05660 0.93928 1.23432 0.97540 1.03202 1.03962 0.93073 0.92764 0.94919 0.86465 0.86656 0.86781 0.86552 0.85835 0.91038 0.89572 0.90216 0.91019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -24.11 12.29 55.43 0.68 -23.43 16 2 C 0.08 2.29 5.38 -17.82 -0.10 2.20 16 3 Si 0.88 20.76 29.54 -169.99 -5.02 15.73 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 7 C -0.53 -14.65 9.01 -34.44 -0.31 -14.96 16 8 H 0.07 1.76 7.83 -52.49 -0.41 1.35 16 9 C 0.22 5.64 2.05 -91.77 -0.19 5.45 16 10 O -0.32 -8.41 9.10 -35.23 -0.32 -8.73 16 11 C 0.11 2.45 5.85 36.01 0.21 2.66 16 12 C -0.07 -1.30 5.51 -104.63 -0.58 -1.87 16 13 C -0.11 -1.85 9.70 -39.58 -0.38 -2.24 16 14 C -0.13 -1.96 10.05 -39.58 -0.40 -2.36 16 15 C -0.13 -1.89 10.05 -39.58 -0.40 -2.29 16 16 C -0.13 -2.06 10.05 -39.58 -0.40 -2.46 16 17 C -0.09 -1.66 9.70 -39.59 -0.38 -2.04 16 18 C -0.18 -4.36 10.18 -26.73 -0.27 -4.63 16 19 C -0.24 -5.41 9.69 -26.73 -0.26 -5.66 16 20 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 21 H 0.05 1.25 7.98 -51.93 -0.41 0.84 16 22 H 0.03 0.66 7.60 -51.93 -0.39 0.27 16 23 H 0.12 1.85 8.06 -52.49 -0.42 1.42 16 24 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 25 H 0.11 1.33 8.06 -52.48 -0.42 0.90 16 26 H 0.12 1.58 8.06 -52.49 -0.42 1.16 16 27 H 0.12 2.46 8.06 -52.48 -0.42 2.03 16 28 H 0.07 1.62 8.14 -51.93 -0.42 1.19 16 29 H 0.09 1.98 8.14 -51.93 -0.42 1.56 16 30 H 0.08 1.69 8.14 -51.93 -0.42 1.27 16 31 H 0.07 1.46 7.87 -51.93 -0.41 1.06 16 LS Contribution 273.78 15.07 4.13 4.13 Total: -1.00 -29.82 273.78 -8.14 -37.95 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: -4.15 Total: 2.55 kcal Atomic # 6 Polarization: -24.75 SS G_CDS: -3.45 Total: -28.21 kcal Atomic # 7 Polarization: -24.11 SS G_CDS: 0.68 Total: -23.43 kcal Atomic # 8 Polarization: -8.41 SS G_CDS: -0.32 Total: -8.73 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -29.82 -8.14 -37.95 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214481763.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.742 kcal (2) G-P(sol) polarization free energy of solvation -29.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.955 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds