Wall clock time and date at job start Mon Mar 30 2020 02:43:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99650 * 2 1 4 4 H 1.48505 * 109.47046 * 269.99567 * 3 2 1 5 5 H 1.48492 * 109.47513 * 29.99955 * 3 2 1 6 6 H 1.48505 * 109.46962 * 150.00043 * 3 2 1 7 7 C 1.37872 * 120.00339 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00282 * 172.11848 * 7 2 1 9 9 C 1.50706 * 120.00033 * 352.11983 * 7 2 1 10 10 O 1.42897 * 115.54858 * 324.65379 * 9 7 2 11 11 C 1.42905 * 113.99955 * 279.05959 * 10 9 7 12 12 C 1.50702 * 109.47340 * 175.14262 * 11 10 9 13 13 C 1.38234 * 119.99344 * 90.00264 * 12 11 10 14 14 C 1.38239 * 119.99430 * 180.02562 * 13 12 11 15 15 C 1.38235 * 119.99938 * 359.95866 * 14 13 12 16 16 C 1.38232 * 120.00288 * 0.27530 * 15 14 13 17 17 C 1.38227 * 120.00063 * 270.02415 * 12 11 10 18 18 C 1.52999 * 117.51497 * 110.34734 * 9 7 2 19 19 C 1.52998 * 117.50158 * 178.97735 * 9 7 2 20 20 H 0.96995 * 120.00495 * 359.97438 * 1 2 3 21 21 H 1.09001 * 109.46377 * 55.15006 * 11 10 9 22 22 H 1.08998 * 109.47399 * 295.15234 * 11 10 9 23 23 H 1.08001 * 120.00613 * 0.02562 * 13 12 11 24 24 H 1.07999 * 119.99959 * 179.97438 * 14 13 12 25 25 H 1.08008 * 119.99533 * 179.97438 * 15 14 13 26 26 H 1.08001 * 119.99881 * 179.72615 * 16 15 14 27 27 H 1.08004 * 120.00737 * 0.02562 * 17 12 11 28 28 H 1.09006 * 117.49555 * 214.96808 * 18 9 7 29 29 H 1.08996 * 117.50609 * 359.97438 * 18 9 7 30 30 H 1.09001 * 117.49761 * 359.97438 * 19 9 7 31 31 H 1.09002 * 117.50046 * 145.00096 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0769 -1.1984 -0.1277 9 6 1.2618 -2.4929 0.1801 10 8 0.1402 -2.4444 1.0641 11 6 0.4869 -2.5270 2.4480 12 6 -0.7515 -2.3471 3.2877 13 6 -1.5070 -3.4468 3.6493 14 6 -2.6433 -3.2817 4.4191 15 6 -3.0234 -2.0172 4.8281 16 6 -2.2705 -0.9170 4.4625 17 6 -1.1320 -1.0825 3.6960 18 6 1.1691 -3.4269 -1.0282 19 6 2.0803 -3.7851 0.1475 20 1 -0.4850 0.8400 0.0004 21 1 1.2064 -1.7447 2.6895 22 1 0.9275 -3.5023 2.6546 23 1 -1.2097 -4.4349 3.3304 24 1 -3.2339 -4.1408 4.7013 25 1 -3.9114 -1.8882 5.4292 26 1 -2.5700 0.0714 4.7783 27 1 -0.5422 -0.2232 3.4129 28 1 0.2525 -4.0046 -1.1486 29 1 1.6449 -3.1020 -1.9534 30 1 3.1560 -3.6958 -0.0042 31 1 1.7633 -4.5983 0.8005 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214481763.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:16 Heat of formation + Delta-G solvation = -6.394291 kcal Electronic energy + Delta-G solvation = -14353.994847 eV Core-core repulsion = 11986.820188 eV Total energy + Delta-G solvation = -2367.174659 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.18951 -39.00743 -35.44944 -34.18968 -32.30237 -31.73726 -27.68267 -26.79595 -23.40005 -23.12353 -22.08632 -21.64019 -19.05292 -17.63761 -16.78227 -16.57284 -16.23993 -16.11504 -15.43203 -14.87139 -14.35661 -14.26977 -14.00819 -13.54340 -13.20461 -12.85438 -12.83641 -12.56464 -12.17023 -12.10270 -11.90708 -11.57599 -11.31598 -10.89139 -10.14755 -9.89648 -9.76487 -9.60411 -8.06999 -6.25180 0.44741 0.55244 1.38754 1.40303 1.50329 2.39196 2.78296 3.01738 3.33820 3.64292 3.99575 4.11202 4.20979 4.33070 4.37040 4.46322 4.53604 4.63560 4.78794 4.84851 4.85281 5.04812 5.14214 5.20216 5.23367 5.45040 5.60384 5.63115 5.64666 5.83736 6.09716 6.17179 6.71167 7.02597 7.46044 8.95306 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.026569 B = 0.010225 C = 0.007909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.612559 B = 2737.686167 C = 3539.444826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.871 5.871 2 C 0.037 3.963 3 Si 0.947 3.053 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.267 1.267 7 C -0.550 4.550 8 H 0.061 0.939 9 C 0.176 3.824 10 O -0.345 6.345 11 C 0.114 3.886 12 C -0.097 4.097 13 C -0.117 4.117 14 C -0.124 4.124 15 C -0.120 4.120 16 C -0.130 4.130 17 C -0.115 4.115 18 C -0.186 4.186 19 C -0.214 4.214 20 H 0.258 0.742 21 H 0.027 0.973 22 H 0.048 0.952 23 H 0.129 0.871 24 H 0.154 0.846 25 H 0.155 0.845 26 H 0.139 0.861 27 H 0.097 0.903 28 H 0.078 0.922 29 H 0.086 0.914 30 H 0.089 0.911 31 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.782 -4.212 8.935 10.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.168 4.168 3 Si 0.771 3.229 4 H -0.198 1.198 5 H -0.206 1.206 6 H -0.191 1.191 7 C -0.587 4.587 8 H 0.080 0.920 9 C 0.137 3.863 10 O -0.264 6.264 11 C 0.038 3.962 12 C -0.097 4.097 13 C -0.135 4.135 14 C -0.141 4.141 15 C -0.137 4.137 16 C -0.148 4.148 17 C -0.133 4.133 18 C -0.224 4.224 19 C -0.252 4.252 20 H 0.067 0.933 21 H 0.046 0.954 22 H 0.066 0.934 23 H 0.147 0.853 24 H 0.172 0.828 25 H 0.173 0.827 26 H 0.157 0.843 27 H 0.116 0.884 28 H 0.096 0.904 29 H 0.104 0.896 30 H 0.108 0.892 31 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -4.148 -4.080 8.872 10.610 hybrid contribution 0.875 0.954 -0.378 1.349 sum -3.273 -3.126 8.494 9.624 Atomic orbital electron populations 1.70287 1.07130 1.26763 1.46374 1.25737 0.95442 1.01997 0.93582 0.85755 0.79003 0.79610 0.78504 1.19834 1.20639 1.19108 1.21030 0.93322 0.90864 1.53450 0.92043 1.19525 0.87012 0.88674 0.91102 1.87920 1.30615 1.94228 1.13601 1.20975 0.93614 0.98587 0.83044 1.19886 0.97458 0.94561 0.97763 1.21247 0.95622 0.98155 0.98438 1.21469 0.96235 0.98672 0.97770 1.21515 1.00159 0.92095 0.99961 1.21388 0.94582 1.00446 0.98382 1.21111 0.97974 0.96261 0.97954 1.23105 1.00381 1.05052 0.93836 1.23410 0.97659 1.01435 1.02693 0.93263 0.95424 0.93411 0.85334 0.82846 0.82712 0.84272 0.88440 0.90396 0.89570 0.89236 0.89049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -51.64 12.29 21.45 0.26 -51.38 16 2 C 0.04 2.08 5.38 84.65 0.46 2.54 16 3 Si 0.95 43.53 29.54 68.60 2.03 45.55 16 4 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 5 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 6 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 7 C -0.55 -31.01 9.01 25.60 0.23 -30.78 16 8 H 0.06 3.39 7.83 -2.91 -0.02 3.36 16 9 C 0.18 9.28 2.05 -11.54 -0.02 9.26 16 10 O -0.34 -18.50 9.10 -148.98 -1.36 -19.85 16 11 C 0.11 5.22 5.85 71.24 0.42 5.63 16 12 C -0.10 -3.90 5.51 -19.87 -0.11 -4.01 16 13 C -0.12 -3.86 9.70 22.27 0.22 -3.65 16 14 C -0.12 -3.28 10.05 22.27 0.22 -3.06 16 15 C -0.12 -3.07 10.05 22.27 0.22 -2.84 16 16 C -0.13 -4.00 10.05 22.27 0.22 -3.78 16 17 C -0.11 -4.49 9.70 22.27 0.22 -4.28 16 18 C -0.19 -8.73 10.18 30.59 0.31 -8.42 16 19 C -0.21 -9.32 9.69 30.59 0.30 -9.02 16 20 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 21 H 0.03 1.36 7.98 -2.39 -0.02 1.34 16 22 H 0.05 1.95 7.60 -2.39 -0.02 1.94 16 23 H 0.13 3.84 8.06 -2.91 -0.02 3.82 16 24 H 0.15 2.90 8.06 -2.91 -0.02 2.88 16 25 H 0.16 2.74 8.06 -2.91 -0.02 2.72 16 26 H 0.14 3.52 8.06 -2.91 -0.02 3.49 16 27 H 0.10 4.18 8.06 -2.91 -0.02 4.16 16 28 H 0.08 3.50 8.14 -2.38 -0.02 3.48 16 29 H 0.09 3.96 8.14 -2.39 -0.02 3.94 16 30 H 0.09 3.68 8.14 -2.39 -0.02 3.66 16 31 H 0.09 3.57 7.87 -2.39 -0.02 3.55 16 Total: -1.00 -65.29 273.78 4.71 -60.58 By element: Atomic # 1 Polarization: 16.41 SS G_CDS: 1.10 Total: 17.50 kcal Atomic # 6 Polarization: -55.08 SS G_CDS: 2.68 Total: -52.40 kcal Atomic # 7 Polarization: -51.64 SS G_CDS: 0.26 Total: -51.38 kcal Atomic # 8 Polarization: -18.50 SS G_CDS: -1.36 Total: -19.85 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.55 kcal Total: -65.29 4.71 -60.58 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214481763.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.185 kcal (2) G-P(sol) polarization free energy of solvation -65.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds