Wall clock time and date at job start Mon Mar 30 2020 02:42:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30826 * 1 3 3 Si 1.86802 * 120.00505 * 2 1 4 4 H 1.48493 * 109.47110 * 275.41506 * 3 2 1 5 5 H 1.48506 * 109.46859 * 35.41195 * 3 2 1 6 6 H 1.48498 * 109.47379 * 155.41151 * 3 2 1 7 7 C 1.39952 * 119.99922 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99653 * 341.76251 * 7 2 1 9 9 C 1.41389 * 120.00092 * 161.48871 * 7 2 1 10 10 C 1.40714 * 120.24459 * 330.32536 * 9 7 2 11 11 C 1.37620 * 119.74517 * 179.76563 * 10 9 7 12 12 C 1.38638 * 120.24681 * 0.51452 * 11 10 9 13 13 C 1.50698 * 119.74896 * 179.75769 * 12 11 10 14 14 H 1.09000 * 109.82567 * 205.54564 * 13 12 11 15 15 C 1.54379 * 109.82798 * 84.56755 * 13 12 11 16 16 C 1.55307 * 102.25659 * 219.12729 * 15 13 12 17 17 C 1.54950 * 100.93799 * 34.13408 * 16 15 13 18 18 O 1.43238 * 109.83119 * 326.43845 * 13 12 11 19 19 C 1.38632 * 120.50043 * 359.73898 * 12 11 10 20 20 C 1.37619 * 120.24970 * 0.02562 * 19 12 11 21 21 H 0.97003 * 119.99347 * 359.97438 * 1 2 3 22 22 H 1.07997 * 120.12644 * 0.02828 * 10 9 7 23 23 H 1.07997 * 119.87556 * 180.22980 * 11 10 9 24 24 H 1.08998 * 110.85488 * 337.32197 * 15 13 12 25 25 H 1.09000 * 110.84874 * 100.94100 * 15 13 12 26 26 H 1.08999 * 111.12789 * 276.22161 * 16 15 13 27 27 H 1.08998 * 111.16444 * 152.06751 * 16 15 13 28 28 H 1.08994 * 110.31096 * 204.63944 * 17 16 15 29 29 H 1.09005 * 110.39466 * 82.51466 * 17 16 15 30 30 H 1.08002 * 119.87549 * 179.97438 * 19 12 11 31 31 H 1.07999 * 120.12853 * 180.02562 * 20 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 2.3755 2.1124 -1.3938 5 1 1.5017 2.6169 0.8113 6 1 3.5924 1.4097 0.5825 7 6 2.0080 -1.2120 -0.0005 8 1 1.5086 -2.1240 0.2918 9 6 3.3670 -1.2436 -0.3893 10 6 3.8592 -0.3121 -1.3221 11 6 5.1849 -0.3491 -1.6896 12 6 6.0320 -1.3061 -1.1524 13 6 7.4805 -1.3397 -1.5669 14 1 7.8777 -2.3470 -1.4412 15 6 8.2931 -0.3439 -0.7117 16 6 9.2782 0.2564 -1.7516 17 6 8.3955 0.2593 -3.0251 18 8 7.6039 -0.9359 -2.9356 19 6 5.5568 -2.2320 -0.2366 20 6 4.2359 -2.2107 0.1489 21 1 -0.4849 0.8401 0.0004 22 1 3.2001 0.4317 -1.7448 23 1 5.5657 0.3672 -2.4025 24 1 7.6466 0.4300 -0.2980 25 1 8.8336 -0.8632 0.0797 26 1 10.1514 -0.3832 -1.8804 27 1 9.5730 1.2688 -1.4756 28 1 9.0198 0.2337 -3.9182 29 1 7.7520 1.1391 -3.0393 30 1 6.2256 -2.9734 0.1751 31 1 3.8679 -2.9328 0.8628 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214481840.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:46 Heat of formation + Delta-G solvation = -38.757646 kcal Electronic energy + Delta-G solvation = -14345.427259 eV Core-core repulsion = 11976.849220 eV Total energy + Delta-G solvation = -2368.578039 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.37019 -37.34080 -33.67437 -31.87856 -31.17520 -29.65286 -28.29453 -24.89345 -21.98421 -21.55175 -21.38592 -19.74374 -17.41598 -16.49967 -15.96107 -15.40792 -14.68282 -13.90957 -13.81724 -13.33142 -13.05737 -12.65290 -12.40364 -12.27722 -11.74602 -11.52733 -11.40399 -11.07870 -10.80197 -10.64367 -10.44791 -10.18498 -9.94940 -9.54457 -9.23244 -8.99018 -7.68162 -7.48064 -6.94173 -4.46297 2.56769 2.72216 3.11824 3.22077 3.32019 3.99496 4.17291 4.56203 4.75448 5.00339 5.15012 5.39763 5.48651 5.51929 5.81582 5.85090 5.93166 6.01443 6.07484 6.12264 6.24096 6.40568 6.59248 6.87626 6.92768 7.19616 7.35987 7.47691 7.60305 7.85465 7.92276 8.14625 8.37469 8.68090 8.82268 10.08392 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.043256 B = 0.008433 C = 0.007684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.151346 B = 3319.594708 C = 3642.900539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.809 5.809 2 C 0.084 3.916 3 Si 0.913 3.087 4 H -0.271 1.271 5 H -0.292 1.292 6 H -0.245 1.245 7 C -0.449 4.449 8 H 0.090 0.910 9 C 0.094 3.906 10 C -0.240 4.240 11 C -0.053 4.053 12 C -0.229 4.229 13 C 0.143 3.857 14 H 0.071 0.929 15 C -0.146 4.146 16 C -0.158 4.158 17 C 0.049 3.951 18 O -0.375 6.375 19 C -0.073 4.073 20 C -0.210 4.210 21 H 0.285 0.715 22 H 0.099 0.901 23 H 0.093 0.907 24 H 0.079 0.921 25 H 0.075 0.925 26 H 0.073 0.927 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.055 0.945 30 H 0.093 0.907 31 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.153 2.473 -1.477 13.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.433 5.433 2 C -0.135 4.135 3 Si 0.739 3.261 4 H -0.197 1.197 5 H -0.219 1.219 6 H -0.168 1.168 7 C -0.477 4.477 8 H 0.108 0.892 9 C 0.091 3.909 10 C -0.260 4.260 11 C -0.071 4.071 12 C -0.231 4.231 13 C 0.086 3.914 14 H 0.089 0.911 15 C -0.184 4.184 16 C -0.195 4.195 17 C -0.028 4.028 18 O -0.295 6.295 19 C -0.091 4.091 20 C -0.230 4.230 21 H 0.095 0.905 22 H 0.117 0.883 23 H 0.111 0.889 24 H 0.098 0.902 25 H 0.094 0.906 26 H 0.092 0.908 27 H 0.095 0.905 28 H 0.095 0.905 29 H 0.074 0.926 30 H 0.111 0.889 31 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 12.767 2.449 -1.625 13.100 hybrid contribution 0.219 0.894 0.160 0.934 sum 12.985 3.342 -1.465 13.488 Atomic orbital electron populations 1.69707 1.08102 1.30204 1.35336 1.26162 0.94691 1.01768 0.90833 0.86296 0.81239 0.79753 0.78781 1.19681 1.21921 1.16839 1.19512 0.93336 0.96076 1.38782 0.89192 1.17757 0.92956 0.90825 0.89329 1.21026 0.95576 1.05026 1.04335 1.20334 0.93245 0.96499 0.97016 1.19273 0.94369 1.02658 1.06764 1.21269 0.93229 0.96703 0.80195 0.91102 1.23235 0.97370 0.99561 0.98238 1.23264 0.98640 1.01676 0.95961 1.23302 0.92719 0.89043 0.97693 1.88461 1.72597 1.42210 1.26201 1.20390 0.95301 0.96694 0.96764 1.20965 0.92949 1.04128 1.04926 0.90498 0.88318 0.88915 0.90237 0.90599 0.90835 0.90487 0.90453 0.92633 0.88879 0.88158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.89 13.93 55.55 0.77 -21.11 16 2 C 0.08 2.25 5.40 -17.34 -0.09 2.15 16 3 Si 0.91 21.21 24.52 -169.99 -4.17 17.04 16 4 H -0.27 -6.14 6.70 56.52 0.38 -5.76 16 5 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.25 -5.82 6.87 56.52 0.39 -5.43 16 7 C -0.45 -12.37 9.57 -37.74 -0.36 -12.73 16 8 H 0.09 2.58 8.06 -52.48 -0.42 2.16 16 9 C 0.09 2.45 5.11 -106.83 -0.55 1.90 16 10 C -0.24 -6.00 7.19 -38.87 -0.28 -6.28 16 11 C -0.05 -1.20 9.33 -39.66 -0.37 -1.57 16 12 C -0.23 -4.82 4.90 -104.33 -0.51 -5.34 16 13 C 0.14 2.48 3.73 -27.16 -0.10 2.38 16 14 H 0.07 1.16 8.06 -51.93 -0.42 0.74 16 15 C -0.15 -2.09 6.53 -24.79 -0.16 -2.25 16 16 C -0.16 -1.85 7.16 -24.48 -0.18 -2.03 16 17 C 0.05 0.67 7.77 38.19 0.30 0.97 16 18 O -0.38 -6.68 10.12 -35.23 -0.36 -7.04 16 19 C -0.07 -1.55 9.66 -39.66 -0.38 -1.94 16 20 C -0.21 -4.98 9.80 -38.87 -0.38 -5.36 16 21 H 0.28 6.96 8.30 -40.82 -0.34 6.62 16 22 H 0.10 2.47 4.73 -52.49 -0.25 2.22 16 23 H 0.09 1.96 7.58 -52.49 -0.40 1.56 16 24 H 0.08 1.24 7.84 -51.93 -0.41 0.83 16 25 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 26 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 27 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 30 H 0.09 1.69 8.06 -52.49 -0.42 1.26 16 31 H 0.10 2.23 8.06 -52.49 -0.42 1.81 16 LS Contribution 256.78 15.07 3.87 3.87 Total: -1.00 -28.42 256.78 -6.97 -35.39 By element: Atomic # 1 Polarization: 5.96 SS G_CDS: -4.02 Total: 1.94 kcal Atomic # 6 Polarization: -27.02 SS G_CDS: -3.07 Total: -30.08 kcal Atomic # 7 Polarization: -21.89 SS G_CDS: 0.77 Total: -21.11 kcal Atomic # 8 Polarization: -6.68 SS G_CDS: -0.36 Total: -7.04 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -4.17 Total: 17.04 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -28.42 -6.97 -35.39 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214481840.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.363 kcal (2) G-P(sol) polarization free energy of solvation -28.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds