Wall clock time and date at job start Mon Mar 30 2020 03:21:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50696 * 119.99628 * 2 1 4 4 C 1.50696 * 120.00168 * 180.02562 * 2 1 3 5 5 O 1.42904 * 109.47231 * 359.97438 * 4 2 1 6 6 C 1.35644 * 116.99699 * 179.97438 * 5 4 2 7 7 C 1.38441 * 120.26917 * 0.28067 * 6 5 4 8 8 C 1.38304 * 120.05062 * 180.25138 * 7 6 5 9 9 C 1.38826 * 120.59159 * 359.74457 * 8 7 6 10 10 C 1.36486 * 120.53659 * 359.97438 * 9 8 7 11 11 C 1.40719 * 119.93028 * 0.02562 * 10 9 8 12 12 C 1.41159 * 120.28966 * 179.97438 * 11 10 9 13 13 H 1.07995 * 119.99768 * 205.30740 * 12 11 10 14 14 C 1.39932 * 120.00146 * 25.31195 * 12 11 10 15 15 N 1.30872 * 119.99613 * 17.14247 * 14 12 11 16 16 Si 1.86801 * 120.00359 * 197.14328 * 14 12 11 17 17 H 1.48502 * 109.46597 * 265.18363 * 16 14 12 18 18 H 1.48498 * 109.46892 * 25.18138 * 16 14 12 19 19 H 1.48494 * 109.47049 * 145.18577 * 16 14 12 20 20 H 1.08003 * 119.99974 * 179.97438 * 1 2 3 21 21 H 1.07997 * 120.00764 * 359.97438 * 1 2 3 22 22 H 1.09005 * 109.47060 * 270.00180 * 3 2 1 23 23 H 1.08998 * 109.47127 * 29.99664 * 3 2 1 24 24 H 1.09003 * 109.47021 * 150.00141 * 3 2 1 25 25 H 1.09004 * 109.47091 * 239.99995 * 4 2 1 26 26 H 1.09001 * 109.47157 * 119.99853 * 4 2 1 27 27 H 1.08001 * 119.97720 * 359.97438 * 7 6 5 28 28 H 1.07995 * 119.70532 * 179.75942 * 8 7 6 29 29 H 1.08000 * 119.73180 * 179.97438 * 9 8 7 30 30 H 1.08001 * 120.03705 * 180.02562 * 10 9 8 31 31 H 0.97001 * 119.99373 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 2.0635 -1.3050 -0.0006 5 8 1.1350 -2.3913 -0.0005 6 6 1.6535 -3.6447 -0.0015 7 6 3.0252 -3.8324 0.0033 8 6 3.5491 -5.1123 -0.0030 9 6 2.7107 -6.2189 -0.0089 10 6 1.3549 -6.0617 -0.0079 11 6 0.7979 -4.7695 -0.0015 12 6 -0.6032 -4.5981 -0.0010 13 1 -1.0364 -3.6913 -0.3964 14 6 -1.4309 -5.6032 0.5118 15 7 -0.9291 -6.5338 1.2830 16 14 -3.2519 -5.6166 0.0956 17 1 -4.0105 -4.9292 1.1714 18 1 -3.4703 -4.9109 -1.1927 19 1 -3.7222 -7.0201 -0.0227 20 1 -0.5400 -0.9353 -0.0004 21 1 -0.5401 0.9352 0.0004 22 1 2.2450 1.6198 -1.0277 23 1 1.4743 2.0647 0.5138 24 1 3.0159 1.1748 0.5138 25 1 2.6902 -1.3632 0.8894 26 1 2.6902 -1.3624 -0.8906 27 1 3.6867 -2.9787 0.0074 28 1 4.6199 -5.2523 -0.0032 29 1 3.1348 -7.2121 -0.0142 30 1 0.7103 -6.9282 -0.0120 31 1 -1.5027 -7.2307 1.6382 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214482045.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:53 Heat of formation + Delta-G solvation = -8.175272 kcal Electronic energy + Delta-G solvation = -14177.266401 eV Core-core repulsion = 11810.014512 eV Total energy + Delta-G solvation = -2367.251888 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.77171 -36.53037 -34.47266 -33.55959 -29.75619 -28.63593 -26.97927 -26.24318 -25.01367 -21.04982 -20.49134 -18.09761 -17.38881 -16.48863 -15.33156 -15.04681 -14.81734 -14.17495 -13.77359 -13.11497 -13.09890 -12.73217 -12.54438 -11.95089 -11.70297 -11.34840 -11.20452 -10.99853 -10.75809 -10.67514 -10.44516 -10.01681 -9.70719 -9.39069 -9.12224 -8.67618 -7.44754 -6.98154 -6.66006 -4.20407 2.54839 2.78917 3.02933 3.11648 3.16438 3.24522 3.99686 4.23819 4.68119 5.14524 5.45705 5.60563 5.62416 5.68635 5.80239 5.95264 6.00438 6.11014 6.31586 6.38081 6.50118 6.96079 6.97662 7.11912 7.21093 7.34774 7.41793 7.77815 7.81475 8.10428 8.25904 8.45941 8.74820 8.89927 9.12422 10.25955 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.022540 B = 0.010465 C = 0.007312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.946398 B = 2674.992574 C = 3828.526163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.147 4.147 3 C -0.110 4.110 4 C 0.100 3.900 5 O -0.305 6.305 6 C 0.011 3.989 7 C -0.178 4.178 8 C -0.215 4.215 9 C -0.126 4.126 10 C -0.147 4.147 11 C 0.098 3.902 12 C -0.446 4.446 13 H 0.081 0.919 14 C 0.073 3.927 15 N -0.798 5.798 16 Si 0.907 3.093 17 H -0.271 1.271 18 H -0.260 1.260 19 H -0.276 1.276 20 H 0.117 0.883 21 H 0.091 0.909 22 H 0.064 0.936 23 H 0.063 0.937 24 H 0.061 0.939 25 H 0.057 0.943 26 H 0.056 0.944 27 H 0.094 0.906 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.123 0.877 31 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.157 7.557 -1.685 8.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.147 4.147 3 C -0.166 4.166 4 C 0.024 3.976 5 O -0.220 6.220 6 C -0.033 4.033 7 C -0.197 4.197 8 C -0.235 4.235 9 C -0.145 4.145 10 C -0.166 4.166 11 C 0.096 3.904 12 C -0.475 4.475 13 H 0.099 0.901 14 C -0.144 4.144 15 N -0.425 5.425 16 Si 0.732 3.268 17 H -0.196 1.196 18 H -0.184 1.184 19 H -0.201 1.201 20 H 0.135 0.865 21 H 0.109 0.891 22 H 0.083 0.917 23 H 0.082 0.918 24 H 0.080 0.920 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.112 0.888 28 H 0.106 0.894 29 H 0.106 0.894 30 H 0.141 0.859 31 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 1.878 7.408 -1.540 7.796 hybrid contribution -0.442 -0.065 -0.015 0.447 sum 1.435 7.343 -1.555 7.642 Atomic orbital electron populations 1.23804 0.95570 1.02312 0.99101 1.21592 0.95996 0.94156 1.02991 1.20716 1.00014 0.94053 1.01857 1.21178 0.91454 0.84781 1.00213 1.85897 1.33617 1.12040 1.90425 1.19177 0.91348 0.83316 1.09457 1.20616 0.93308 0.96901 1.08881 1.20127 0.97076 0.92319 1.13992 1.20380 0.94398 0.96429 1.03297 1.20862 0.93349 0.97013 1.05416 1.17061 0.92776 0.88566 0.92030 1.19404 0.90751 1.02598 1.34778 0.90062 1.25894 1.01277 0.94418 0.92775 1.69848 1.38023 1.11812 1.22788 0.86313 0.82091 0.78309 0.80115 1.19640 1.18423 1.20134 0.86501 0.89080 0.91682 0.91763 0.92045 0.92528 0.92602 0.88807 0.89404 0.89368 0.85893 0.91010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.78 13.66 29.01 0.40 -2.38 16 2 C -0.15 -2.33 6.05 -101.07 -0.61 -2.94 16 3 C -0.11 -1.28 10.03 36.00 0.36 -0.92 16 4 C 0.10 1.84 5.14 36.00 0.19 2.02 16 5 O -0.30 -7.16 7.83 -18.63 -0.15 -7.31 16 6 C 0.01 0.28 6.72 -38.33 -0.26 0.03 16 7 C -0.18 -4.15 9.04 -39.48 -0.36 -4.50 16 8 C -0.22 -4.97 10.04 -39.34 -0.39 -5.37 16 9 C -0.13 -3.05 9.97 -40.00 -0.40 -3.45 16 10 C -0.15 -3.90 8.64 -39.28 -0.34 -4.24 16 11 C 0.10 2.72 5.58 -106.68 -0.60 2.12 16 12 C -0.45 -12.24 8.72 -37.84 -0.33 -12.57 16 13 H 0.08 2.21 7.66 -52.49 -0.40 1.80 16 14 C 0.07 1.88 5.15 -17.33 -0.09 1.79 16 15 N -0.80 -21.07 10.97 55.55 0.61 -20.46 16 16 Si 0.91 19.21 29.59 -169.99 -5.03 14.18 16 17 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 18 H -0.26 -5.48 7.11 56.52 0.40 -5.08 16 19 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 20 H 0.12 2.23 6.84 -52.48 -0.36 1.87 16 21 H 0.09 1.21 8.04 -52.49 -0.42 0.79 16 22 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 23 H 0.06 0.66 8.06 -51.93 -0.42 0.25 16 24 H 0.06 0.66 8.12 -51.93 -0.42 0.23 16 25 H 0.06 1.01 7.66 -51.93 -0.40 0.61 16 26 H 0.06 0.97 7.68 -51.93 -0.40 0.58 16 27 H 0.09 1.90 6.31 -52.49 -0.33 1.57 16 28 H 0.09 1.78 8.06 -52.49 -0.42 1.35 16 29 H 0.09 1.89 8.06 -52.49 -0.42 1.47 16 30 H 0.12 3.33 6.19 -52.49 -0.32 3.01 16 31 H 0.28 6.68 8.30 -40.82 -0.34 6.34 16 LS Contribution 267.55 15.07 4.03 4.03 Total: -1.00 -28.62 267.55 -6.84 -35.46 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: -3.88 Total: 4.52 kcal Atomic # 6 Polarization: -27.99 SS G_CDS: -2.43 Total: -30.42 kcal Atomic # 7 Polarization: -21.07 SS G_CDS: 0.61 Total: -20.46 kcal Atomic # 8 Polarization: -7.16 SS G_CDS: -0.15 Total: -7.31 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -5.03 Total: 14.18 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -28.62 -6.84 -35.46 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214482045.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.284 kcal (2) G-P(sol) polarization free energy of solvation -28.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds