Wall clock time and date at job start Mon Mar 30 2020 03:21:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50696 * 119.99628 * 2 1 4 4 C 1.50696 * 120.00168 * 180.02562 * 2 1 3 5 5 O 1.42904 * 109.47231 * 359.97438 * 4 2 1 6 6 C 1.35644 * 116.99699 * 179.97438 * 5 4 2 7 7 C 1.38441 * 120.26917 * 0.28067 * 6 5 4 8 8 C 1.38304 * 120.05062 * 180.25138 * 7 6 5 9 9 C 1.38826 * 120.59159 * 359.74457 * 8 7 6 10 10 C 1.36486 * 120.53659 * 359.97438 * 9 8 7 11 11 C 1.40719 * 119.93028 * 0.02562 * 10 9 8 12 12 C 1.41159 * 120.28966 * 179.97438 * 11 10 9 13 13 H 1.07995 * 119.99768 * 205.30740 * 12 11 10 14 14 C 1.39932 * 120.00146 * 25.31195 * 12 11 10 15 15 N 1.30872 * 119.99613 * 17.14247 * 14 12 11 16 16 Si 1.86801 * 120.00359 * 197.14328 * 14 12 11 17 17 H 1.48502 * 109.46597 * 265.18363 * 16 14 12 18 18 H 1.48498 * 109.46892 * 25.18138 * 16 14 12 19 19 H 1.48494 * 109.47049 * 145.18577 * 16 14 12 20 20 H 1.08003 * 119.99974 * 179.97438 * 1 2 3 21 21 H 1.07997 * 120.00764 * 359.97438 * 1 2 3 22 22 H 1.09005 * 109.47060 * 270.00180 * 3 2 1 23 23 H 1.08998 * 109.47127 * 29.99664 * 3 2 1 24 24 H 1.09003 * 109.47021 * 150.00141 * 3 2 1 25 25 H 1.09004 * 109.47091 * 239.99995 * 4 2 1 26 26 H 1.09001 * 109.47157 * 119.99853 * 4 2 1 27 27 H 1.08001 * 119.97720 * 359.97438 * 7 6 5 28 28 H 1.07995 * 119.70532 * 179.75942 * 8 7 6 29 29 H 1.08000 * 119.73180 * 179.97438 * 9 8 7 30 30 H 1.08001 * 120.03705 * 180.02562 * 10 9 8 31 31 H 0.97001 * 119.99373 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 2.0635 -1.3050 -0.0006 5 8 1.1350 -2.3913 -0.0005 6 6 1.6535 -3.6447 -0.0015 7 6 3.0252 -3.8324 0.0033 8 6 3.5491 -5.1123 -0.0030 9 6 2.7107 -6.2189 -0.0089 10 6 1.3549 -6.0617 -0.0079 11 6 0.7979 -4.7695 -0.0015 12 6 -0.6032 -4.5981 -0.0010 13 1 -1.0364 -3.6913 -0.3964 14 6 -1.4309 -5.6032 0.5118 15 7 -0.9291 -6.5338 1.2830 16 14 -3.2519 -5.6166 0.0956 17 1 -4.0105 -4.9292 1.1714 18 1 -3.4703 -4.9109 -1.1927 19 1 -3.7222 -7.0201 -0.0227 20 1 -0.5400 -0.9353 -0.0004 21 1 -0.5401 0.9352 0.0004 22 1 2.2450 1.6198 -1.0277 23 1 1.4743 2.0647 0.5138 24 1 3.0159 1.1748 0.5138 25 1 2.6902 -1.3632 0.8894 26 1 2.6902 -1.3624 -0.8906 27 1 3.6867 -2.9787 0.0074 28 1 4.6199 -5.2523 -0.0032 29 1 3.1348 -7.2121 -0.0142 30 1 0.7103 -6.9282 -0.0120 31 1 -1.5027 -7.2307 1.6382 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214482045.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:53 Heat of formation + Delta-G solvation = -23.353477 kcal Electronic energy + Delta-G solvation = -14177.924577 eV Core-core repulsion = 11810.014512 eV Total energy + Delta-G solvation = -2367.910064 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.55442 -38.25744 -35.86951 -35.48033 -31.68083 -30.48036 -28.08863 -27.75118 -26.93372 -22.92746 -22.35508 -19.55132 -19.19375 -18.30077 -17.10660 -16.61897 -16.43654 -15.95046 -15.38819 -14.69645 -14.39760 -14.24663 -14.18902 -13.46880 -13.33638 -13.06643 -12.78830 -12.71632 -12.37884 -12.14583 -11.97028 -11.75542 -11.62122 -11.24336 -11.04144 -9.93166 -9.40256 -8.89490 -8.57345 -6.23068 0.92605 1.09011 1.29654 1.36521 1.47380 1.53063 2.22236 2.65421 2.74683 3.68892 3.89059 4.25459 4.31870 4.36367 4.41482 4.53209 4.65805 4.72841 4.87765 5.03339 5.11704 5.15393 5.20376 5.42832 5.45258 5.66991 5.83131 5.87730 6.01473 6.15539 6.30810 6.53101 6.79756 6.91591 7.23573 8.36385 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.022540 B = 0.010465 C = 0.007312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.946398 B = 2674.992574 C = 3828.526163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.145 4.145 3 C -0.104 4.104 4 C 0.087 3.913 5 O -0.327 6.327 6 C -0.002 4.002 7 C -0.181 4.181 8 C -0.207 4.207 9 C -0.135 4.135 10 C -0.168 4.168 11 C 0.058 3.942 12 C -0.483 4.483 13 H 0.067 0.933 14 C 0.033 3.967 15 N -0.830 5.830 16 Si 0.979 3.021 17 H -0.264 1.264 18 H -0.262 1.262 19 H -0.261 1.261 20 H 0.077 0.923 21 H 0.123 0.877 22 H 0.081 0.919 23 H 0.081 0.919 24 H 0.073 0.927 25 H 0.065 0.935 26 H 0.069 0.931 27 H 0.127 0.873 28 H 0.126 0.874 29 H 0.114 0.886 30 H 0.107 0.893 31 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.161 8.815 -1.825 9.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.145 4.145 3 C -0.160 4.160 4 C 0.012 3.988 5 O -0.242 6.242 6 C -0.046 4.046 7 C -0.200 4.200 8 C -0.226 4.226 9 C -0.153 4.153 10 C -0.188 4.188 11 C 0.056 3.944 12 C -0.513 4.513 13 H 0.085 0.915 14 C -0.181 4.181 15 N -0.457 5.457 16 Si 0.800 3.200 17 H -0.189 1.189 18 H -0.186 1.186 19 H -0.186 1.186 20 H 0.096 0.904 21 H 0.141 0.859 22 H 0.099 0.901 23 H 0.100 0.900 24 H 0.092 0.908 25 H 0.083 0.917 26 H 0.087 0.913 27 H 0.145 0.855 28 H 0.144 0.856 29 H 0.132 0.868 30 H 0.125 0.875 31 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 2.905 8.673 -1.678 9.300 hybrid contribution -0.587 -0.405 0.035 0.714 sum 2.317 8.269 -1.643 8.743 Atomic orbital electron populations 1.23793 0.96050 1.02013 1.00547 1.21908 0.96007 0.94727 1.01834 1.20766 1.00200 0.91698 1.03351 1.21563 0.91597 0.84494 1.01133 1.85890 1.35690 1.12336 1.90280 1.19396 0.92233 0.83882 1.09117 1.21002 0.92797 0.98416 1.07804 1.20609 0.98902 0.91713 1.11393 1.20697 0.93570 0.98366 1.02708 1.20859 0.94530 0.96342 1.07027 1.17472 0.93591 0.89945 0.93437 1.19509 0.91619 1.03244 1.36914 0.91470 1.26699 1.05763 0.93597 0.91997 1.69886 1.39903 1.12498 1.23393 0.85247 0.76178 0.78928 0.79686 1.18876 1.18569 1.18558 0.90412 0.85923 0.90057 0.90012 0.90789 0.91655 0.91339 0.85508 0.85645 0.86777 0.87469 0.90197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -6.03 13.66 67.78 0.93 -5.10 16 2 C -0.14 -4.35 6.05 -16.49 -0.10 -4.45 16 3 C -0.10 -2.07 10.03 71.23 0.71 -1.35 16 4 C 0.09 3.12 5.14 71.23 0.37 3.49 16 5 O -0.33 -15.69 7.83 -89.58 -0.70 -16.39 16 6 C 0.00 -0.09 6.72 23.08 0.16 0.06 16 7 C -0.18 -8.17 9.04 22.33 0.20 -7.97 16 8 C -0.21 -9.06 10.04 22.43 0.23 -8.84 16 9 C -0.14 -6.41 9.97 22.00 0.22 -6.19 16 10 C -0.17 -9.17 8.64 22.47 0.19 -8.98 16 11 C 0.06 3.32 5.58 -21.20 -0.12 3.20 16 12 C -0.48 -27.88 8.72 23.40 0.20 -27.68 16 13 H 0.07 3.90 7.66 -2.91 -0.02 3.88 16 14 C 0.03 1.75 5.15 85.25 0.44 2.19 16 15 N -0.83 -45.16 10.97 21.83 0.24 -44.92 16 16 Si 0.98 40.42 29.59 68.60 2.03 42.45 16 17 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 18 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 19 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 20 H 0.08 3.12 6.84 -2.91 -0.02 3.10 16 21 H 0.12 3.08 8.04 -2.91 -0.02 3.05 16 22 H 0.08 1.40 8.14 -2.38 -0.02 1.38 16 23 H 0.08 1.38 8.06 -2.39 -0.02 1.36 16 24 H 0.07 1.31 8.12 -2.39 -0.02 1.29 16 25 H 0.07 2.21 7.66 -2.38 -0.02 2.19 16 26 H 0.07 2.26 7.68 -2.39 -0.02 2.24 16 27 H 0.13 4.76 6.31 -2.91 -0.02 4.74 16 28 H 0.13 4.53 8.06 -2.91 -0.02 4.51 16 29 H 0.11 4.70 8.06 -2.91 -0.02 4.68 16 30 H 0.11 6.07 6.19 -2.91 -0.02 6.05 16 31 H 0.29 14.07 8.30 -92.71 -0.77 13.30 16 Total: -1.00 -63.99 267.55 6.10 -57.89 By element: Atomic # 1 Polarization: 21.49 SS G_CDS: 1.11 Total: 22.60 kcal Atomic # 6 Polarization: -65.05 SS G_CDS: 3.43 Total: -61.62 kcal Atomic # 7 Polarization: -45.16 SS G_CDS: 0.24 Total: -44.92 kcal Atomic # 8 Polarization: -15.69 SS G_CDS: -0.70 Total: -16.39 kcal Atomic # 14 Polarization: 40.42 SS G_CDS: 2.03 Total: 42.45 kcal Total: -63.99 6.10 -57.89 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214482045.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.537 kcal (2) G-P(sol) polarization free energy of solvation -63.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds