Wall clock time and date at job start Mon Mar 30 2020 02:43:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30835 * 1 3 3 Si 1.86796 * 120.00132 * 2 1 4 4 H 1.48497 * 109.47232 * 239.99735 * 3 2 1 5 5 H 1.48502 * 109.47233 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.46863 * 119.99988 * 3 2 1 7 7 C 1.39934 * 119.99636 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99753 * 193.54381 * 7 2 1 9 9 C 1.41404 * 120.00148 * 13.53688 * 7 2 1 10 10 C 1.40760 * 120.21921 * 205.88807 * 9 7 2 11 11 C 1.37623 * 119.85716 * 180.02562 * 10 9 7 12 12 C 1.38561 * 120.30874 * 0.02562 * 11 10 9 13 13 C 1.39117 * 120.44074 * 359.95994 * 12 11 10 14 14 O 1.35896 * 119.93175 * 180.02562 * 13 12 11 15 15 C 1.42899 * 117.00412 * 5.90814 * 14 13 12 16 16 C 1.53784 * 113.61406 * 157.25987 * 15 14 13 17 17 C 1.53784 * 87.16823 * 89.16477 * 16 15 14 18 18 C 1.53777 * 87.08412 * 25.38996 * 17 16 15 19 19 C 1.38139 * 120.13276 * 0.29728 * 13 12 11 20 20 H 0.97007 * 119.99668 * 359.97438 * 1 2 3 21 21 H 1.08002 * 120.06999 * 0.02562 * 10 9 7 22 22 H 1.08004 * 119.85033 * 180.02562 * 11 10 9 23 23 H 1.07998 * 119.78232 * 179.97438 * 12 11 10 24 24 H 1.08997 * 112.90140 * 26.01619 * 15 14 13 25 25 H 1.09001 * 113.61640 * 334.57647 * 16 15 14 26 26 H 1.08998 * 113.60995 * 203.75140 * 16 15 14 27 27 H 1.08998 * 113.61372 * 139.93885 * 17 16 15 28 28 H 1.08996 * 113.61302 * 270.84064 * 17 16 15 29 29 H 1.08997 * 113.61660 * 89.11342 * 18 17 16 30 30 H 1.08995 * 113.61511 * 219.93511 * 18 17 16 31 31 H 1.08004 * 120.14957 * 179.70674 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 3.0962 1.6963 -1.2124 5 1 1.2774 2.7465 -0.0006 6 1 3.0961 1.6963 1.2126 7 6 2.0079 -1.2119 -0.0005 8 1 3.0654 -1.2250 0.2185 9 6 1.3303 -2.4193 -0.2877 10 6 1.8177 -3.6415 0.2125 11 6 1.1526 -4.8123 -0.0720 12 6 0.0056 -4.7938 -0.8492 13 6 -0.4873 -3.5930 -1.3498 14 8 -1.6134 -3.5868 -2.1105 15 6 -2.3104 -4.8268 -2.2480 16 6 -3.7936 -4.6618 -2.6191 17 6 -3.3496 -4.6894 -4.0912 18 6 -2.1227 -5.4904 -3.6245 19 6 0.1687 -2.4077 -1.0799 20 1 -0.4850 0.8401 0.0004 21 1 2.7116 -3.6604 0.8183 22 1 1.5264 -5.7499 0.3122 23 1 -0.5094 -5.7176 -1.0676 24 1 -2.1426 -5.5029 -1.4098 25 1 -4.2178 -3.7069 -2.3088 26 1 -4.4122 -5.5127 -2.3337 27 1 -4.0197 -5.2548 -4.7388 28 1 -3.1027 -3.7060 -4.4912 29 1 -2.2834 -6.5684 -3.6134 30 1 -1.1983 -5.2054 -4.1267 31 1 -0.2110 -1.4760 -1.4724 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214482605.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:57 Heat of formation + Delta-G solvation = -18.253856 kcal Electronic energy + Delta-G solvation = -14203.251236 eV Core-core repulsion = 11835.562308 eV Total energy + Delta-G solvation = -2367.688928 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.02265 -39.00567 -36.89504 -35.31972 -31.53062 -30.37994 -27.42581 -26.57345 -26.04701 -22.97735 -22.65062 -20.49110 -19.15302 -18.18040 -16.95823 -16.63298 -16.39615 -16.10101 -15.54847 -15.09196 -14.68789 -14.29463 -13.73575 -13.48062 -13.31153 -12.90144 -12.76568 -12.65974 -12.21264 -12.03673 -11.84862 -11.69811 -11.45372 -11.18728 -10.96786 -10.92312 -9.38955 -8.83335 -8.55841 -6.42968 0.94608 1.11719 1.37481 1.50296 1.53611 2.20211 2.48291 2.74250 3.62119 3.68273 3.75136 3.93733 4.06675 4.31825 4.41466 4.65358 4.75816 4.80286 4.86725 5.00462 5.06016 5.09785 5.13556 5.18098 5.30489 5.42042 5.57806 5.91442 5.93130 6.08872 6.18019 6.48299 6.87832 6.93212 7.06628 8.33291 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.037156 B = 0.007776 C = 0.006727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.390301 B = 3599.833031 C = 4161.257516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.029 3.971 3 Si 0.988 3.012 4 H -0.260 1.260 5 H -0.268 1.268 6 H -0.255 1.255 7 C -0.496 4.496 8 H 0.083 0.917 9 C 0.104 3.896 10 C -0.266 4.266 11 C -0.063 4.063 12 C -0.316 4.316 13 C 0.129 3.871 14 O -0.325 6.325 15 C 0.032 3.968 16 C -0.130 4.130 17 C -0.129 4.129 18 C -0.153 4.153 19 C -0.230 4.230 20 H 0.287 0.713 21 H 0.104 0.896 22 H 0.130 0.870 23 H 0.127 0.873 24 H 0.083 0.917 25 H 0.062 0.938 26 H 0.126 0.874 27 H 0.097 0.903 28 H 0.063 0.937 29 H 0.118 0.882 30 H 0.054 0.946 31 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.821 -6.604 -4.468 9.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.185 4.185 3 Si 0.808 3.192 4 H -0.184 1.184 5 H -0.193 1.193 6 H -0.179 1.179 7 C -0.526 4.526 8 H 0.101 0.899 9 C 0.102 3.898 10 C -0.286 4.286 11 C -0.081 4.081 12 C -0.336 4.336 13 C 0.084 3.916 14 O -0.240 6.240 15 C -0.024 4.024 16 C -0.168 4.168 17 C -0.166 4.166 18 C -0.191 4.191 19 C -0.250 4.250 20 H 0.098 0.902 21 H 0.122 0.878 22 H 0.148 0.852 23 H 0.145 0.855 24 H 0.101 0.899 25 H 0.081 0.919 26 H 0.144 0.856 27 H 0.115 0.885 28 H 0.082 0.918 29 H 0.136 0.864 30 H 0.073 0.927 31 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -5.125 -6.295 -4.557 9.309 hybrid contribution 0.392 0.740 0.226 0.868 sum -4.733 -5.555 -4.331 8.486 Atomic orbital electron populations 1.69921 1.09188 1.30510 1.35555 1.26895 0.95572 1.04891 0.91155 0.85167 0.78635 0.75155 0.80220 1.18408 1.19275 1.17894 1.19856 0.97087 0.91733 1.43878 0.89916 1.17753 0.90743 0.93620 0.87731 1.21203 1.04687 0.93244 1.09454 1.20748 0.94093 0.97387 0.95912 1.20813 1.03617 0.95904 1.13217 1.19054 0.86248 0.94672 0.91581 1.85961 1.36993 1.34524 1.66475 1.23696 0.94440 0.85389 0.98888 1.23204 0.93191 1.03639 0.96727 1.22744 0.97358 1.00204 0.96284 1.23483 0.99093 1.01162 0.95334 1.20579 1.01765 0.95134 1.07517 0.90240 0.87768 0.85206 0.85483 0.89946 0.91948 0.85631 0.88481 0.91817 0.86354 0.92696 0.88054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -45.77 10.82 21.82 0.24 -45.53 16 2 C 0.03 1.55 5.22 85.25 0.44 2.00 16 3 Si 0.99 39.43 29.58 68.60 2.03 41.46 16 4 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 5 H -0.27 -10.16 7.11 99.48 0.71 -9.45 16 6 H -0.25 -9.67 7.11 99.48 0.71 -8.97 16 7 C -0.50 -27.81 9.07 23.46 0.21 -27.59 16 8 H 0.08 4.37 7.88 -2.91 -0.02 4.35 16 9 C 0.10 5.95 5.57 -21.31 -0.12 5.83 16 10 C -0.27 -13.56 9.79 22.74 0.22 -13.34 16 11 C -0.06 -2.85 10.02 22.20 0.22 -2.62 16 12 C -0.32 -14.33 9.02 22.56 0.20 -14.13 16 13 C 0.13 6.58 6.67 22.46 0.15 6.73 16 14 O -0.32 -14.96 10.06 -92.38 -0.93 -15.89 16 15 C 0.03 1.09 3.72 31.18 0.12 1.20 16 16 C -0.13 -3.38 7.91 31.12 0.25 -3.13 16 17 C -0.13 -3.14 8.02 31.12 0.25 -2.89 16 18 C -0.15 -4.12 7.92 31.18 0.25 -3.87 16 19 C -0.23 -13.26 8.61 22.82 0.20 -13.06 16 20 H 0.29 14.43 8.30 -92.70 -0.77 13.66 16 21 H 0.10 4.92 8.06 -2.91 -0.02 4.89 16 22 H 0.13 4.73 8.06 -2.91 -0.02 4.70 16 23 H 0.13 4.86 5.91 -2.91 -0.02 4.84 16 24 H 0.08 2.68 6.00 -2.39 -0.01 2.66 16 25 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 26 H 0.13 2.35 8.14 -2.39 -0.02 2.33 16 27 H 0.10 1.73 8.14 -2.39 -0.02 1.72 16 28 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 29 H 0.12 2.38 8.14 -2.39 -0.02 2.36 16 30 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.10 6.26 6.12 -2.91 -0.02 6.24 16 Total: -1.00 -64.52 262.48 4.84 -59.68 By element: Atomic # 1 Polarization: 24.05 SS G_CDS: 1.12 Total: 25.17 kcal Atomic # 6 Polarization: -67.27 SS G_CDS: 2.39 Total: -64.88 kcal Atomic # 7 Polarization: -45.77 SS G_CDS: 0.24 Total: -45.53 kcal Atomic # 8 Polarization: -14.96 SS G_CDS: -0.93 Total: -15.89 kcal Atomic # 14 Polarization: 39.43 SS G_CDS: 2.03 Total: 41.46 kcal Total: -64.52 4.84 -59.68 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214482605.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.425 kcal (2) G-P(sol) polarization free energy of solvation -64.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds