Wall clock time and date at job start Mon Mar 30 2020 02:41:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30817 * 1 3 3 Si 1.86798 * 120.00269 * 2 1 4 4 H 1.48505 * 109.46840 * 274.65966 * 3 2 1 5 5 H 1.48499 * 109.47127 * 34.65777 * 3 2 1 6 6 H 1.48500 * 109.47438 * 154.66056 * 3 2 1 7 7 C 1.39950 * 119.99870 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99647 * 162.23545 * 7 2 1 9 9 C 1.41396 * 120.00297 * 342.23616 * 7 2 1 10 10 C 1.40738 * 120.23826 * 335.30771 * 9 7 2 11 11 C 1.37598 * 119.73916 * 179.97438 * 10 9 7 12 12 C 1.38659 * 120.25182 * 0.02562 * 11 10 9 13 13 C 1.38611 * 120.49939 * 359.68182 * 12 11 10 14 14 C 1.50699 * 119.87572 * 180.30370 * 13 12 11 15 15 H 1.09003 * 110.80271 * 183.92720 * 14 13 12 16 16 C 1.54812 * 110.90918 * 60.29712 * 14 13 12 17 17 C 1.54094 * 104.18566 * 220.92112 * 16 14 13 18 18 O 1.43746 * 107.29915 * 357.96924 * 17 16 14 19 19 C 1.44380 * 106.97149 * 26.51280 * 18 17 16 20 20 C 1.37641 * 120.24516 * 0.59818 * 13 12 11 21 21 H 0.97001 * 120.00096 * 0.02562 * 1 2 3 22 22 H 1.07992 * 120.13362 * 359.97438 * 10 9 7 23 23 H 1.08004 * 119.87500 * 180.02562 * 11 10 9 24 24 H 1.07997 * 119.74917 * 179.97438 * 12 11 10 25 25 H 1.08997 * 110.48367 * 339.59807 * 16 14 13 26 26 H 1.09001 * 110.48932 * 102.24454 * 16 14 13 27 27 H 1.09004 * 109.87707 * 117.39625 * 17 16 14 28 28 H 1.09004 * 109.87869 * 238.39296 * 17 16 14 29 29 H 1.09001 * 110.61900 * 201.43835 * 19 18 17 30 30 H 1.09004 * 110.61699 * 78.44167 * 19 18 17 31 31 H 1.08007 * 120.12280 * 179.69437 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.3912 2.1032 -1.3955 5 1 1.4924 2.6222 0.7962 6 1 3.5856 1.4137 0.5992 7 6 2.0079 -1.2120 0.0005 8 1 3.0492 -1.2344 -0.2848 9 6 1.3515 -2.4072 0.3747 10 6 0.2228 -2.3630 1.2142 11 6 -0.4084 -3.5324 1.5714 12 6 0.0639 -4.7509 1.1079 13 6 1.1711 -4.8058 0.2758 14 6 1.6684 -6.1372 -0.2252 15 1 2.5815 -6.0152 -0.8078 16 6 0.5771 -6.8587 -1.0530 17 6 0.6810 -8.3317 -0.6125 18 8 1.7628 -8.4207 0.3299 19 6 1.8891 -7.1231 0.9503 20 6 1.8217 -3.6492 -0.0898 21 1 -0.4850 0.8400 -0.0004 22 1 -0.1465 -1.4152 1.5766 23 1 -1.2750 -3.5010 2.2151 24 1 -0.4374 -5.6637 1.3937 25 1 -0.4085 -6.4582 -0.8160 26 1 0.7821 -6.7640 -2.1193 27 1 -0.2499 -8.6434 -0.1387 28 1 0.8865 -8.9634 -1.4768 29 1 2.8846 -6.9964 1.3758 30 1 1.1238 -6.9869 1.7144 31 1 2.6872 -3.6947 -0.7343 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214483284.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:35 Heat of formation + Delta-G solvation = -42.175728 kcal Electronic energy + Delta-G solvation = -14174.628607 eV Core-core repulsion = 11805.902349 eV Total energy + Delta-G solvation = -2368.726258 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.30938 -37.27299 -33.97498 -32.20218 -29.85582 -29.55460 -27.47734 -25.23443 -22.64217 -21.62488 -20.74988 -19.52284 -17.05261 -16.16373 -15.65894 -15.15677 -14.70292 -14.49991 -13.73660 -13.36055 -12.98243 -12.59449 -12.06987 -11.87595 -11.52590 -11.47390 -11.18331 -10.93047 -10.88490 -10.66418 -10.32178 -10.22125 -9.65371 -9.43081 -9.34223 -9.14864 -7.49099 -7.27471 -6.77849 -4.37794 2.75694 2.92962 3.05922 3.10145 3.19663 3.91853 4.23615 4.56971 5.03828 5.16017 5.30919 5.46649 5.63961 5.72294 5.91122 6.03067 6.03520 6.13375 6.29687 6.34836 6.45292 6.53936 6.91384 7.03198 7.11071 7.22988 7.36105 7.56867 7.87519 8.02503 8.07502 8.26484 8.61721 8.87585 8.95327 10.17282 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.059438 B = 0.006603 C = 0.006325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 470.963339 B = 4239.413841 C = 4426.112747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.795 5.795 2 C 0.076 3.924 3 Si 0.906 3.094 4 H -0.271 1.271 5 H -0.275 1.275 6 H -0.260 1.260 7 C -0.465 4.465 8 H 0.077 0.923 9 C 0.110 3.890 10 C -0.164 4.164 11 C -0.105 4.105 12 C -0.235 4.235 13 C -0.057 4.057 14 C -0.072 4.072 15 H 0.080 0.920 16 C -0.148 4.148 17 C 0.048 3.952 18 O -0.388 6.388 19 C 0.054 3.946 20 C -0.216 4.216 21 H 0.280 0.720 22 H 0.117 0.883 23 H 0.087 0.913 24 H 0.085 0.915 25 H 0.081 0.919 26 H 0.072 0.928 27 H 0.053 0.947 28 H 0.077 0.923 29 H 0.089 0.911 30 H 0.066 0.934 31 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.531 -6.705 -0.223 6.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C -0.141 4.141 3 Si 0.731 3.269 4 H -0.196 1.196 5 H -0.200 1.200 6 H -0.184 1.184 7 C -0.494 4.494 8 H 0.095 0.905 9 C 0.108 3.892 10 C -0.184 4.184 11 C -0.123 4.123 12 C -0.255 4.255 13 C -0.057 4.057 14 C -0.090 4.090 15 H 0.099 0.901 16 C -0.186 4.186 17 C -0.029 4.029 18 O -0.307 6.307 19 C -0.022 4.022 20 C -0.236 4.236 21 H 0.091 0.909 22 H 0.135 0.865 23 H 0.105 0.895 24 H 0.104 0.896 25 H 0.100 0.900 26 H 0.091 0.909 27 H 0.071 0.929 28 H 0.095 0.905 29 H 0.107 0.893 30 H 0.084 0.916 31 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 0.451 -6.728 -0.197 6.746 hybrid contribution 0.073 1.058 -0.159 1.072 sum 0.524 -5.670 -0.356 5.705 Atomic orbital electron populations 1.69825 1.07607 1.29167 1.35416 1.25900 0.94699 1.01298 0.92218 0.86333 0.80793 0.80760 0.79044 1.19592 1.20040 1.18420 1.19566 0.98090 0.91274 1.40495 0.90490 1.17589 0.91151 0.91913 0.88558 1.21330 0.99342 0.96789 1.00901 1.20660 0.98557 0.93297 0.99807 1.20123 1.01336 0.96012 1.07995 1.18971 0.96303 0.92074 0.98342 1.21568 0.98024 0.93716 0.95731 0.90145 1.23033 1.00754 0.94192 1.00591 1.23131 0.90340 0.96976 0.92428 1.88791 1.53235 1.32487 1.56209 1.23731 1.02107 0.81005 0.95363 1.20856 1.03588 0.92345 1.06768 0.90912 0.86547 0.89475 0.89643 0.90048 0.90935 0.92872 0.90485 0.89270 0.91565 0.89060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.54 10.97 55.55 0.61 -19.93 16 2 C 0.08 1.92 5.14 -17.34 -0.09 1.83 16 3 Si 0.91 18.58 29.59 -169.99 -5.03 13.55 16 4 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 5 H -0.28 -5.52 7.11 56.52 0.40 -5.11 16 6 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 7 C -0.46 -12.31 9.05 -37.74 -0.34 -12.65 16 8 H 0.08 1.96 7.91 -52.49 -0.41 1.55 16 9 C 0.11 2.93 5.57 -106.83 -0.60 2.33 16 10 C -0.16 -4.26 8.70 -38.87 -0.34 -4.60 16 11 C -0.10 -2.44 10.02 -39.66 -0.40 -2.84 16 12 C -0.24 -5.11 8.21 -39.29 -0.32 -5.44 16 13 C -0.06 -1.22 4.94 -104.70 -0.52 -1.74 16 14 C -0.07 -1.27 3.34 -89.76 -0.30 -1.57 16 15 H 0.08 1.40 7.95 -51.93 -0.41 0.99 16 16 C -0.15 -2.30 6.50 -25.20 -0.16 -2.46 16 17 C 0.05 0.67 7.70 37.73 0.29 0.96 16 18 O -0.39 -6.35 11.52 -35.23 -0.41 -6.75 16 19 C 0.05 0.89 7.10 38.21 0.27 1.16 16 20 C -0.22 -5.23 9.42 -38.88 -0.37 -5.59 16 21 H 0.28 6.57 8.30 -40.82 -0.34 6.23 16 22 H 0.12 3.12 6.18 -52.49 -0.32 2.79 16 23 H 0.09 1.82 8.06 -52.48 -0.42 1.40 16 24 H 0.09 1.67 7.21 -52.49 -0.38 1.29 16 25 H 0.08 1.32 7.22 -51.93 -0.38 0.95 16 26 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 27 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 30 H 0.07 1.09 6.66 -51.93 -0.35 0.75 16 31 H 0.09 2.10 7.98 -52.48 -0.42 1.68 16 LS Contribution 259.13 15.07 3.90 3.90 Total: -1.00 -27.27 259.13 -7.71 -34.98 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: -3.92 Total: 4.86 kcal Atomic # 6 Polarization: -27.74 SS G_CDS: -2.87 Total: -30.61 kcal Atomic # 7 Polarization: -20.54 SS G_CDS: 0.61 Total: -19.93 kcal Atomic # 8 Polarization: -6.35 SS G_CDS: -0.41 Total: -6.75 kcal Atomic # 14 Polarization: 18.58 SS G_CDS: -5.03 Total: 13.55 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -27.27 -7.71 -34.98 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214483284.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.197 kcal (2) G-P(sol) polarization free energy of solvation -27.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds