Wall clock time and date at job start Mon Mar 30 2020 02:41:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86804 * 119.99806 * 2 1 4 4 H 1.48496 * 109.47013 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47060 * 300.00604 * 3 2 1 6 6 H 1.48499 * 109.47008 * 60.00328 * 3 2 1 7 7 C 1.39938 * 120.00176 * 180.02562 * 2 1 3 8 8 H 1.08008 * 120.00035 * 197.85102 * 7 2 1 9 9 C 1.41394 * 120.00097 * 17.85045 * 7 2 1 10 10 C 1.40736 * 120.24514 * 24.39334 * 9 7 2 11 11 C 1.37594 * 119.74500 * 179.97438 * 10 9 7 12 12 C 1.38650 * 120.25210 * 0.02562 * 11 10 9 13 13 C 1.38620 * 120.49925 * 359.97438 * 12 11 10 14 14 C 1.50702 * 119.87244 * 180.27878 * 13 12 11 15 15 H 1.08998 * 110.74839 * 181.74299 * 14 13 12 16 16 C 1.55301 * 110.84767 * 305.43397 * 14 13 12 17 17 C 1.54947 * 100.94208 * 152.32762 * 16 14 13 18 18 O 1.43647 * 105.13598 * 323.55697 * 17 16 14 19 19 C 1.43239 * 109.96878 * 24.42767 * 18 17 16 20 20 C 1.37635 * 120.25026 * 359.97438 * 13 12 11 21 21 H 0.96997 * 120.00028 * 359.97438 * 1 2 3 22 22 H 1.07998 * 120.12621 * 0.02562 * 10 9 7 23 23 H 1.07997 * 119.87241 * 179.97438 * 11 10 9 24 24 H 1.08000 * 119.75337 * 179.97438 * 12 11 10 25 25 H 1.09004 * 111.13205 * 270.24905 * 16 14 13 26 26 H 1.08999 * 111.12625 * 34.40863 * 16 14 13 27 27 H 1.09001 * 110.31075 * 204.64243 * 17 16 14 28 28 H 1.08994 * 110.30987 * 82.47816 * 17 16 14 29 29 H 1.09004 * 109.82753 * 238.77476 * 19 18 17 30 30 H 1.08999 * 109.82895 * 117.80666 * 19 18 17 31 31 H 1.07994 * 120.12840 * 180.02562 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.7022 1.3465 -0.0006 5 1 1.8833 2.3965 -1.2124 6 1 1.8835 2.3964 1.2125 7 6 2.0080 -1.2119 -0.0005 8 1 3.0490 -1.2345 0.2862 9 6 1.3521 -2.4068 -0.3764 10 6 0.2207 -2.3617 -1.2122 11 6 -0.4093 -3.5308 -1.5720 12 6 0.0662 -4.7501 -1.1140 13 6 1.1797 -4.8064 -0.2903 14 6 1.6882 -6.1398 0.1942 15 1 2.5465 -6.0094 0.8533 16 6 0.5592 -6.9381 0.9012 17 6 1.0252 -8.3939 0.6477 18 8 1.5995 -8.3800 -0.6689 19 6 2.0432 -7.0577 -0.9951 20 6 1.8264 -3.6498 0.0815 21 1 -0.4850 0.8400 0.0004 22 1 -0.1511 -1.4131 -1.5705 23 1 -1.2779 -3.4986 -2.2130 24 1 -0.4347 -5.6628 -1.4011 25 1 0.5290 -6.7154 1.9678 26 1 -0.4075 -6.7482 0.4348 27 1 0.1748 -9.0749 0.6824 28 1 1.7741 -8.6850 1.3841 29 1 1.5367 -6.7092 -1.8952 30 1 3.1217 -7.0581 -1.1530 31 1 2.6939 -3.6960 0.7230 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214483338.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:37 Heat of formation + Delta-G solvation = -42.226302 kcal Electronic energy + Delta-G solvation = -14173.905338 eV Core-core repulsion = 11805.176887 eV Total energy + Delta-G solvation = -2368.728452 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.32292 -37.27499 -33.98042 -32.22175 -29.85596 -29.59369 -27.51679 -25.24140 -22.36458 -21.86528 -20.73443 -19.55153 -17.06278 -16.24955 -15.69953 -15.18612 -14.59714 -14.39712 -13.79903 -13.36311 -12.87576 -12.67677 -12.16386 -11.83255 -11.55059 -11.46281 -11.19126 -10.95471 -10.92554 -10.64541 -10.32558 -10.31538 -9.58152 -9.41809 -9.27051 -9.13198 -7.49308 -7.27456 -6.77880 -4.37810 2.74883 2.92293 3.06235 3.11557 3.18950 3.91839 4.17157 4.55514 4.99527 5.16744 5.29476 5.47133 5.61062 5.71481 5.87033 5.99577 6.04000 6.18269 6.28751 6.34188 6.44862 6.59311 6.91162 7.04215 7.20200 7.25156 7.36405 7.56767 7.87870 8.02595 8.08087 8.26251 8.61899 8.87609 8.95374 10.17203 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.059592 B = 0.006600 C = 0.006321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 469.747564 B = 4241.163886 C = 4428.634735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.795 5.795 2 C 0.076 3.924 3 Si 0.907 3.093 4 H -0.260 1.260 5 H -0.272 1.272 6 H -0.275 1.275 7 C -0.464 4.464 8 H 0.077 0.923 9 C 0.109 3.891 10 C -0.164 4.164 11 C -0.105 4.105 12 C -0.233 4.233 13 C -0.058 4.058 14 C -0.073 4.073 15 H 0.080 0.920 16 C -0.147 4.147 17 C 0.050 3.950 18 O -0.392 6.392 19 C 0.058 3.942 20 C -0.216 4.216 21 H 0.280 0.720 22 H 0.117 0.883 23 H 0.087 0.913 24 H 0.087 0.913 25 H 0.079 0.921 26 H 0.083 0.917 27 H 0.079 0.921 28 H 0.055 0.945 29 H 0.077 0.923 30 H 0.063 0.937 31 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.146 -6.801 0.796 6.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C -0.141 4.141 3 Si 0.731 3.269 4 H -0.184 1.184 5 H -0.197 1.197 6 H -0.200 1.200 7 C -0.494 4.494 8 H 0.095 0.905 9 C 0.107 3.893 10 C -0.183 4.183 11 C -0.123 4.123 12 C -0.252 4.252 13 C -0.058 4.058 14 C -0.091 4.091 15 H 0.098 0.902 16 C -0.185 4.185 17 C -0.026 4.026 18 O -0.312 6.312 19 C -0.019 4.019 20 C -0.236 4.236 21 H 0.091 0.909 22 H 0.135 0.865 23 H 0.106 0.894 24 H 0.105 0.895 25 H 0.097 0.903 26 H 0.102 0.898 27 H 0.097 0.903 28 H 0.073 0.927 29 H 0.095 0.905 30 H 0.081 0.919 31 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 0.970 -6.810 0.677 6.912 hybrid contribution 0.258 1.070 0.249 1.128 sum 1.227 -5.740 0.926 5.942 Atomic orbital electron populations 1.69834 1.07603 1.29086 1.35486 1.25902 0.94700 1.01310 0.92227 0.86291 0.81027 0.81025 0.78555 1.18405 1.19699 1.20012 1.19594 0.98128 0.91266 1.40395 0.90461 1.17595 0.91183 0.91912 0.88605 1.21344 0.99297 0.96820 1.00864 1.20664 0.98602 0.93285 0.99794 1.20147 1.01077 0.96086 1.07926 1.18946 0.96331 0.91922 0.98567 1.21570 0.97571 0.94012 0.95982 0.90201 1.23359 0.99884 0.93622 1.01587 1.23356 0.97032 0.97325 0.84891 1.88334 1.80170 1.29686 1.33013 1.23311 0.98977 0.81212 0.98353 1.20852 1.03545 0.92319 1.06867 0.90950 0.86494 0.89444 0.89491 0.90275 0.89842 0.90284 0.92694 0.90525 0.91915 0.89083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.55 10.95 55.55 0.61 -19.94 16 2 C 0.08 1.91 5.14 -17.34 -0.09 1.82 16 3 Si 0.91 18.59 29.60 -169.99 -5.03 13.56 16 4 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 5 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 6 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 7 C -0.46 -12.30 9.05 -37.75 -0.34 -12.64 16 8 H 0.08 1.97 7.91 -52.48 -0.42 1.56 16 9 C 0.11 2.91 5.58 -106.82 -0.60 2.31 16 10 C -0.16 -4.26 8.70 -38.87 -0.34 -4.60 16 11 C -0.10 -2.46 10.02 -39.66 -0.40 -2.86 16 12 C -0.23 -5.12 8.12 -39.29 -0.32 -5.44 16 13 C -0.06 -1.24 4.93 -104.70 -0.52 -1.76 16 14 C -0.07 -1.28 3.21 -89.83 -0.29 -1.57 16 15 H 0.08 1.34 7.94 -51.93 -0.41 0.93 16 16 C -0.15 -2.25 6.54 -24.48 -0.16 -2.41 16 17 C 0.05 0.69 7.78 38.19 0.30 0.99 16 18 O -0.39 -6.49 11.36 -35.23 -0.40 -6.89 16 19 C 0.06 0.96 7.31 37.88 0.28 1.24 16 20 C -0.22 -5.23 9.42 -38.87 -0.37 -5.59 16 21 H 0.28 6.55 8.30 -40.82 -0.34 6.21 16 22 H 0.12 3.14 6.16 -52.49 -0.32 2.82 16 23 H 0.09 1.84 8.06 -52.49 -0.42 1.42 16 24 H 0.09 1.74 7.28 -52.49 -0.38 1.36 16 25 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 26 H 0.08 1.35 6.82 -51.93 -0.35 1.00 16 27 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 28 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.08 1.34 7.01 -51.93 -0.36 0.98 16 30 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.09 2.09 7.97 -52.49 -0.42 1.67 16 LS Contribution 259.04 15.07 3.90 3.90 Total: -1.00 -27.38 259.04 -7.68 -35.05 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: -3.92 Total: 4.84 kcal Atomic # 6 Polarization: -27.68 SS G_CDS: -2.84 Total: -30.52 kcal Atomic # 7 Polarization: -20.55 SS G_CDS: 0.61 Total: -19.94 kcal Atomic # 8 Polarization: -6.49 SS G_CDS: -0.40 Total: -6.89 kcal Atomic # 14 Polarization: 18.59 SS G_CDS: -5.03 Total: 13.56 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -27.38 -7.68 -35.05 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214483338.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.176 kcal (2) G-P(sol) polarization free energy of solvation -27.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds