Wall clock time and date at job start Mon Mar 30 2020 02:41:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86804 * 119.99806 * 2 1 4 4 H 1.48496 * 109.47013 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47060 * 300.00604 * 3 2 1 6 6 H 1.48499 * 109.47008 * 60.00328 * 3 2 1 7 7 C 1.39938 * 120.00176 * 180.02562 * 2 1 3 8 8 H 1.08008 * 120.00035 * 197.85102 * 7 2 1 9 9 C 1.41394 * 120.00097 * 17.85045 * 7 2 1 10 10 C 1.40736 * 120.24514 * 24.39334 * 9 7 2 11 11 C 1.37594 * 119.74500 * 179.97438 * 10 9 7 12 12 C 1.38650 * 120.25210 * 0.02562 * 11 10 9 13 13 C 1.38620 * 120.49925 * 359.97438 * 12 11 10 14 14 C 1.50702 * 119.87244 * 180.27878 * 13 12 11 15 15 H 1.08998 * 110.74839 * 181.74299 * 14 13 12 16 16 C 1.55301 * 110.84767 * 305.43397 * 14 13 12 17 17 C 1.54947 * 100.94208 * 152.32762 * 16 14 13 18 18 O 1.43647 * 105.13598 * 323.55697 * 17 16 14 19 19 C 1.43239 * 109.96878 * 24.42767 * 18 17 16 20 20 C 1.37635 * 120.25026 * 359.97438 * 13 12 11 21 21 H 0.96997 * 120.00028 * 359.97438 * 1 2 3 22 22 H 1.07998 * 120.12621 * 0.02562 * 10 9 7 23 23 H 1.07997 * 119.87241 * 179.97438 * 11 10 9 24 24 H 1.08000 * 119.75337 * 179.97438 * 12 11 10 25 25 H 1.09004 * 111.13205 * 270.24905 * 16 14 13 26 26 H 1.08999 * 111.12625 * 34.40863 * 16 14 13 27 27 H 1.09001 * 110.31075 * 204.64243 * 17 16 14 28 28 H 1.08994 * 110.30987 * 82.47816 * 17 16 14 29 29 H 1.09004 * 109.82753 * 238.77476 * 19 18 17 30 30 H 1.08999 * 109.82895 * 117.80666 * 19 18 17 31 31 H 1.07994 * 120.12840 * 180.02562 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.7022 1.3465 -0.0006 5 1 1.8833 2.3965 -1.2124 6 1 1.8835 2.3964 1.2125 7 6 2.0080 -1.2119 -0.0005 8 1 3.0490 -1.2345 0.2862 9 6 1.3521 -2.4068 -0.3764 10 6 0.2207 -2.3617 -1.2122 11 6 -0.4093 -3.5308 -1.5720 12 6 0.0662 -4.7501 -1.1140 13 6 1.1797 -4.8064 -0.2903 14 6 1.6882 -6.1398 0.1942 15 1 2.5465 -6.0094 0.8533 16 6 0.5592 -6.9381 0.9012 17 6 1.0252 -8.3939 0.6477 18 8 1.5995 -8.3800 -0.6689 19 6 2.0432 -7.0577 -0.9951 20 6 1.8264 -3.6498 0.0815 21 1 -0.4850 0.8400 0.0004 22 1 -0.1511 -1.4131 -1.5705 23 1 -1.2779 -3.4986 -2.2130 24 1 -0.4347 -5.6628 -1.4011 25 1 0.5290 -6.7154 1.9678 26 1 -0.4075 -6.7482 0.4348 27 1 0.1748 -9.0749 0.6824 28 1 1.7741 -8.6850 1.3841 29 1 1.5367 -6.7092 -1.8952 30 1 3.1217 -7.0581 -1.1530 31 1 2.6939 -3.6960 0.7230 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214483338.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:37 Heat of formation + Delta-G solvation = -56.909185 kcal Electronic energy + Delta-G solvation = -14174.542036 eV Core-core repulsion = 11805.176887 eV Total energy + Delta-G solvation = -2369.365149 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.70717 -38.98661 -35.77975 -33.78566 -31.74961 -30.94043 -29.07214 -27.14917 -23.84883 -23.16918 -22.55525 -21.22189 -18.84804 -17.56771 -17.34949 -16.73019 -16.32814 -15.70644 -15.44252 -15.05534 -14.39488 -14.12261 -13.82025 -13.57679 -13.13448 -13.07881 -12.74048 -12.63119 -12.32314 -12.20148 -11.98534 -11.73743 -11.35318 -11.21704 -11.02370 -10.46544 -9.39730 -9.11728 -8.65014 -6.35906 0.96231 1.05828 1.37568 1.49864 1.53044 2.20158 2.69725 2.97611 3.57839 3.80689 3.89125 4.12730 4.30495 4.35423 4.38770 4.57862 4.69069 4.81213 4.86735 4.95166 5.04054 5.05845 5.12373 5.23031 5.31216 5.51447 5.69878 6.01875 6.03348 6.09912 6.19631 6.37832 6.69508 6.93525 7.03264 8.32663 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.059592 B = 0.006600 C = 0.006321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 469.747564 B = 4241.163886 C = 4428.634735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.827 5.827 2 C 0.035 3.965 3 Si 0.982 3.018 4 H -0.258 1.258 5 H -0.264 1.264 6 H -0.265 1.265 7 C -0.502 4.502 8 H 0.074 0.926 9 C 0.079 3.921 10 C -0.193 4.193 11 C -0.109 4.109 12 C -0.229 4.229 13 C -0.049 4.049 14 C -0.076 4.076 15 H 0.088 0.912 16 C -0.144 4.144 17 C 0.052 3.948 18 O -0.405 6.405 19 C 0.063 3.937 20 C -0.235 4.235 21 H 0.288 0.712 22 H 0.099 0.901 23 H 0.109 0.891 24 H 0.112 0.888 25 H 0.092 0.908 26 H 0.074 0.926 27 H 0.102 0.898 28 H 0.075 0.925 29 H 0.065 0.935 30 H 0.074 0.926 31 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.404 -7.900 1.195 8.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.180 4.180 3 Si 0.802 3.198 4 H -0.182 1.182 5 H -0.189 1.189 6 H -0.190 1.190 7 C -0.531 4.531 8 H 0.092 0.908 9 C 0.077 3.923 10 C -0.213 4.213 11 C -0.127 4.127 12 C -0.248 4.248 13 C -0.049 4.049 14 C -0.095 4.095 15 H 0.106 0.894 16 C -0.182 4.182 17 C -0.024 4.024 18 O -0.325 6.325 19 C -0.013 4.013 20 C -0.254 4.254 21 H 0.098 0.902 22 H 0.117 0.883 23 H 0.127 0.873 24 H 0.130 0.870 25 H 0.110 0.890 26 H 0.093 0.907 27 H 0.120 0.880 28 H 0.093 0.907 29 H 0.083 0.917 30 H 0.092 0.908 31 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 1.219 -7.932 1.079 8.097 hybrid contribution 0.124 1.273 0.131 1.285 sum 1.343 -6.659 1.209 6.900 Atomic orbital electron populations 1.69886 1.09051 1.30462 1.35941 1.26759 0.95471 1.04546 0.91187 0.85168 0.79418 0.76207 0.78964 1.18187 1.18900 1.18984 1.19844 0.98318 0.92592 1.42378 0.90755 1.17970 0.91933 0.93120 0.89326 1.21293 1.00421 0.97079 1.02478 1.20957 0.98973 0.93110 0.99702 1.20456 1.00930 0.96375 1.07044 1.19312 0.95340 0.93190 0.97042 1.21611 0.98776 0.92143 0.96921 0.89366 1.23351 0.98425 0.94372 1.02027 1.23543 0.98330 0.96485 0.84059 1.88325 1.80453 1.29128 1.34561 1.23193 0.99592 0.81218 0.97298 1.21052 1.04219 0.92621 1.07526 0.90174 0.88304 0.87343 0.87044 0.88969 0.90727 0.88032 0.90712 0.91652 0.90768 0.88614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -43.88 10.95 21.82 0.24 -43.64 16 2 C 0.03 1.78 5.14 85.25 0.44 2.22 16 3 Si 0.98 38.51 29.60 68.60 2.03 40.54 16 4 H -0.26 -9.92 7.11 99.48 0.71 -9.22 16 5 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 6 H -0.27 -9.91 7.11 99.48 0.71 -9.20 16 7 C -0.50 -27.45 9.05 23.46 0.21 -27.24 16 8 H 0.07 3.93 7.91 -2.91 -0.02 3.91 16 9 C 0.08 4.31 5.58 -21.29 -0.12 4.19 16 10 C -0.19 -10.35 8.70 22.73 0.20 -10.15 16 11 C -0.11 -5.12 10.02 22.22 0.22 -4.89 16 12 C -0.23 -9.79 8.12 22.46 0.18 -9.61 16 13 C -0.05 -2.06 4.93 -19.92 -0.10 -2.16 16 14 C -0.08 -2.51 3.21 -10.28 -0.03 -2.54 16 15 H 0.09 2.77 7.94 -2.39 -0.02 2.75 16 16 C -0.14 -4.00 6.54 32.05 0.21 -3.79 16 17 C 0.05 1.22 7.78 72.65 0.56 1.79 16 18 O -0.40 -12.15 11.36 -148.98 -1.69 -13.84 16 19 C 0.06 1.97 7.31 72.45 0.53 2.50 16 20 C -0.23 -11.48 9.42 22.73 0.21 -11.26 16 21 H 0.29 13.71 8.30 -92.71 -0.77 12.95 16 22 H 0.10 5.55 6.16 -2.91 -0.02 5.53 16 23 H 0.11 4.50 8.06 -2.91 -0.02 4.47 16 24 H 0.11 4.20 7.28 -2.91 -0.02 4.18 16 25 H 0.09 2.31 8.14 -2.38 -0.02 2.29 16 26 H 0.07 2.21 6.82 -2.39 -0.02 2.19 16 27 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 28 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.07 2.17 7.01 -2.38 -0.02 2.15 16 30 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 31 H 0.10 4.45 7.97 -2.91 -0.02 4.43 16 Total: -1.00 -59.35 259.04 4.21 -55.13 By element: Atomic # 1 Polarization: 21.64 SS G_CDS: 1.11 Total: 22.76 kcal Atomic # 6 Polarization: -63.48 SS G_CDS: 2.52 Total: -60.95 kcal Atomic # 7 Polarization: -43.88 SS G_CDS: 0.24 Total: -43.64 kcal Atomic # 8 Polarization: -12.15 SS G_CDS: -1.69 Total: -13.84 kcal Atomic # 14 Polarization: 38.51 SS G_CDS: 2.03 Total: 40.54 kcal Total: -59.35 4.21 -55.13 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214483338.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.775 kcal (2) G-P(sol) polarization free energy of solvation -59.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds