Wall clock time and date at job start Mon Mar 30 2020 02:42:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30821 * 1 3 3 Si 1.86808 * 120.00012 * 2 1 4 4 H 1.48493 * 109.46887 * 240.00110 * 3 2 1 5 5 H 1.48497 * 109.47038 * 119.99765 * 3 2 1 6 6 H 1.48499 * 109.46766 * 0.02562 * 3 2 1 7 7 C 1.39946 * 120.00207 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99746 * 154.69512 * 7 2 1 9 9 C 1.41400 * 120.00017 * 334.69838 * 7 2 1 10 10 C 1.40729 * 120.24234 * 333.21065 * 9 7 2 11 11 C 1.37592 * 119.74712 * 179.73835 * 10 9 7 12 12 C 1.38667 * 120.24626 * 0.52219 * 11 10 9 13 13 C 1.38617 * 120.49965 * 359.75650 * 12 11 10 14 14 C 1.37644 * 120.24474 * 359.97438 * 13 12 11 15 15 C 1.50700 * 120.12477 * 180.02562 * 14 13 12 16 16 H 1.08996 * 110.75241 * 184.77688 * 15 14 13 17 17 C 1.55317 * 110.84866 * 308.25136 * 15 14 13 18 18 C 1.55204 * 100.82707 * 152.17719 * 17 15 14 19 19 O 1.43646 * 105.25985 * 323.81802 * 18 17 15 20 20 C 1.43240 * 109.97666 * 24.28465 * 19 18 17 21 21 H 0.97002 * 119.99794 * 174.09223 * 1 2 3 22 22 H 1.08004 * 120.12613 * 0.02562 * 10 9 7 23 23 H 1.07999 * 119.88279 * 180.22957 * 11 10 9 24 24 H 1.07999 * 119.75168 * 179.73589 * 12 11 10 25 25 H 1.07992 * 119.87734 * 179.97438 * 13 12 11 26 26 H 1.08995 * 111.12034 * 270.24397 * 17 15 14 27 27 H 1.08997 * 111.11939 * 34.40129 * 17 15 14 28 28 H 1.08994 * 110.37177 * 204.79724 * 18 17 15 29 29 H 1.09003 * 110.12387 * 82.70621 * 18 17 15 30 30 H 1.08994 * 109.83253 * 238.77959 * 20 19 18 31 31 H 1.08996 * 109.90945 * 117.83959 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 3.0959 1.6964 -1.2125 5 1 3.0959 1.6965 1.2125 6 1 1.2772 2.7465 0.0006 7 6 2.0080 -1.2119 0.0005 8 1 3.0103 -1.2569 -0.3993 9 6 1.4028 -2.3776 0.5244 10 6 0.4074 -2.2758 1.5140 11 6 -0.1786 -3.4164 2.0128 12 6 0.2159 -4.6633 1.5517 13 6 1.1995 -4.7757 0.5814 14 6 1.7954 -3.6478 0.0643 15 6 2.8640 -3.7731 -0.9909 16 1 3.2877 -2.7976 -1.2292 17 6 3.9732 -4.7623 -0.5396 18 6 4.4798 -5.2785 -1.9128 19 8 3.3099 -5.3555 -2.7427 20 6 2.3066 -4.4548 -2.2590 21 1 -0.4850 -0.8356 -0.0865 22 1 0.1013 -1.3058 1.8773 23 1 -0.9453 -3.3407 2.7696 24 1 -0.2463 -5.5535 1.9518 25 1 1.4993 -5.7518 0.2299 26 1 4.7630 -4.2448 0.0049 27 1 3.5563 -5.5752 0.0549 28 1 4.9321 -6.2642 -1.8042 29 1 5.1981 -4.5762 -2.3357 30 1 1.4003 -5.0082 -2.0133 31 1 2.0866 -3.7027 -3.0167 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214483471.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:59 Heat of formation + Delta-G solvation = -45.886751 kcal Electronic energy + Delta-G solvation = -14580.338358 eV Core-core repulsion = 12211.451177 eV Total energy + Delta-G solvation = -2368.887180 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.23225 -37.43096 -33.91228 -32.55650 -29.67262 -29.24724 -27.63324 -25.04302 -22.32858 -21.86626 -20.86670 -19.25181 -17.82751 -16.21919 -15.67871 -14.80375 -14.40477 -14.32439 -14.05073 -13.32640 -12.75263 -12.57853 -12.31226 -12.04945 -11.57262 -11.23496 -11.14637 -10.98908 -10.59273 -10.53717 -10.44313 -10.25409 -9.58730 -9.35405 -9.11603 -8.94284 -7.61045 -7.58250 -7.17365 -4.47433 2.70223 2.76822 3.13634 3.24604 3.33406 3.99485 4.33023 4.53059 5.09888 5.30636 5.37859 5.63496 5.66877 5.83706 5.99160 6.07808 6.17702 6.23300 6.31330 6.34131 6.47157 6.66929 6.69626 6.99387 7.13858 7.34683 7.42090 7.63474 7.77026 7.80772 7.88498 8.16208 8.26830 8.71022 8.85816 10.03616 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.024778 B = 0.011261 C = 0.008499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.774768 B = 2485.764636 C = 3293.696880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.797 5.797 2 C 0.040 3.960 3 Si 1.062 2.938 4 H -0.276 1.276 5 H -0.275 1.275 6 H -0.274 1.274 7 C -0.525 4.525 8 H 0.078 0.922 9 C 0.106 3.894 10 C -0.217 4.217 11 C -0.087 4.087 12 C -0.253 4.253 13 C -0.075 4.075 14 C -0.190 4.190 15 C -0.056 4.056 16 H 0.093 0.907 17 C -0.150 4.150 18 C 0.051 3.949 19 O -0.395 6.395 20 C 0.058 3.942 21 H 0.299 0.701 22 H 0.104 0.896 23 H 0.089 0.911 24 H 0.088 0.912 25 H 0.090 0.910 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.054 0.946 30 H 0.068 0.932 31 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.047 -3.647 -1.026 6.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C -0.182 4.182 3 Si 0.885 3.115 4 H -0.201 1.201 5 H -0.200 1.200 6 H -0.199 1.199 7 C -0.553 4.553 8 H 0.096 0.904 9 C 0.103 3.897 10 C -0.236 4.236 11 C -0.105 4.105 12 C -0.272 4.272 13 C -0.093 4.093 14 C -0.192 4.192 15 C -0.074 4.074 16 H 0.111 0.889 17 C -0.188 4.188 18 C -0.026 4.026 19 O -0.314 6.314 20 C -0.018 4.018 21 H 0.112 0.888 22 H 0.122 0.878 23 H 0.107 0.893 24 H 0.106 0.894 25 H 0.108 0.892 26 H 0.095 0.905 27 H 0.093 0.907 28 H 0.094 0.906 29 H 0.072 0.928 30 H 0.086 0.914 31 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.756 -2.119 -1.155 5.333 hybrid contribution 0.094 -1.583 0.238 1.604 sum 4.850 -3.702 -0.917 6.170 Atomic orbital electron populations 1.70448 1.08233 1.34260 1.29093 1.26954 0.95660 1.04183 0.91361 0.83686 0.75736 0.74081 0.77975 1.20133 1.20032 1.19880 1.20518 1.03059 0.94049 1.37686 0.90421 1.17504 0.90549 0.91995 0.89602 1.21149 1.03960 0.97014 1.01454 1.20636 0.98211 0.93225 0.98429 1.20321 1.05139 0.95868 1.05878 1.20397 0.96215 0.96243 0.96463 1.19257 1.03865 0.93303 1.02729 1.21335 0.94039 0.98927 0.93092 0.88898 1.23438 0.98955 0.99545 0.96830 1.23362 0.88566 1.00389 0.90253 1.88312 1.25593 1.63735 1.53797 1.23324 0.91083 0.91834 0.95599 0.88767 0.87754 0.89303 0.89371 0.89230 0.90497 0.90659 0.90593 0.92773 0.91389 0.91904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.87 12.36 55.55 0.69 -20.18 16 2 C 0.04 1.00 4.93 -17.34 -0.09 0.91 16 3 Si 1.06 21.20 30.00 -169.99 -5.10 16.10 16 4 H -0.28 -5.23 7.11 56.52 0.40 -4.82 16 5 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 6 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 7 C -0.53 -13.37 8.28 -37.74 -0.31 -13.68 16 8 H 0.08 1.91 6.31 -52.48 -0.33 1.58 16 9 C 0.11 2.71 5.27 -106.83 -0.56 2.15 16 10 C -0.22 -5.46 7.97 -38.88 -0.31 -5.77 16 11 C -0.09 -1.99 10.02 -39.66 -0.40 -2.39 16 12 C -0.25 -5.57 10.05 -39.28 -0.39 -5.97 16 13 C -0.07 -1.64 8.19 -39.66 -0.32 -1.97 16 14 C -0.19 -4.38 4.98 -103.91 -0.52 -4.89 16 15 C -0.06 -1.12 3.04 -89.82 -0.27 -1.39 16 16 H 0.09 1.97 5.79 -51.93 -0.30 1.66 16 17 C -0.15 -2.54 6.56 -24.33 -0.16 -2.70 16 18 C 0.05 0.78 7.78 38.32 0.30 1.08 16 19 O -0.39 -7.25 11.36 -35.23 -0.40 -7.65 16 20 C 0.06 1.11 7.32 37.89 0.28 1.38 16 21 H 0.30 8.05 6.75 -40.82 -0.28 7.78 16 22 H 0.10 2.72 6.60 -52.48 -0.35 2.37 16 23 H 0.09 1.82 8.06 -52.49 -0.42 1.40 16 24 H 0.09 1.73 8.06 -52.49 -0.42 1.31 16 25 H 0.09 1.78 7.24 -52.49 -0.38 1.40 16 26 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 27 H 0.07 1.28 6.66 -51.93 -0.35 0.93 16 28 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 29 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.07 1.33 7.22 -51.93 -0.37 0.96 16 31 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 LS Contribution 254.67 15.07 3.84 3.84 Total: -1.00 -26.65 254.67 -7.42 -34.07 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: -3.69 Total: 7.04 kcal Atomic # 6 Polarization: -30.46 SS G_CDS: -2.76 Total: -33.22 kcal Atomic # 7 Polarization: -20.87 SS G_CDS: 0.69 Total: -20.18 kcal Atomic # 8 Polarization: -7.25 SS G_CDS: -0.40 Total: -7.65 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.10 Total: 16.10 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -26.65 -7.42 -34.07 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214483471.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.813 kcal (2) G-P(sol) polarization free energy of solvation -26.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds