Wall clock time and date at job start Mon Mar 30 2020 02:42:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30821 * 1 3 3 Si 1.86808 * 120.00012 * 2 1 4 4 H 1.48493 * 109.46887 * 240.00110 * 3 2 1 5 5 H 1.48497 * 109.47038 * 119.99765 * 3 2 1 6 6 H 1.48499 * 109.46766 * 0.02562 * 3 2 1 7 7 C 1.39946 * 120.00207 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99746 * 154.69512 * 7 2 1 9 9 C 1.41400 * 120.00017 * 334.69838 * 7 2 1 10 10 C 1.40729 * 120.24234 * 333.21065 * 9 7 2 11 11 C 1.37592 * 119.74712 * 179.73835 * 10 9 7 12 12 C 1.38667 * 120.24626 * 0.52219 * 11 10 9 13 13 C 1.38617 * 120.49965 * 359.75650 * 12 11 10 14 14 C 1.37644 * 120.24474 * 359.97438 * 13 12 11 15 15 C 1.50700 * 120.12477 * 180.02562 * 14 13 12 16 16 H 1.08996 * 110.75241 * 184.77688 * 15 14 13 17 17 C 1.55317 * 110.84866 * 308.25136 * 15 14 13 18 18 C 1.55204 * 100.82707 * 152.17719 * 17 15 14 19 19 O 1.43646 * 105.25985 * 323.81802 * 18 17 15 20 20 C 1.43240 * 109.97666 * 24.28465 * 19 18 17 21 21 H 0.97002 * 119.99794 * 174.09223 * 1 2 3 22 22 H 1.08004 * 120.12613 * 0.02562 * 10 9 7 23 23 H 1.07999 * 119.88279 * 180.22957 * 11 10 9 24 24 H 1.07999 * 119.75168 * 179.73589 * 12 11 10 25 25 H 1.07992 * 119.87734 * 179.97438 * 13 12 11 26 26 H 1.08995 * 111.12034 * 270.24397 * 17 15 14 27 27 H 1.08997 * 111.11939 * 34.40129 * 17 15 14 28 28 H 1.08994 * 110.37177 * 204.79724 * 18 17 15 29 29 H 1.09003 * 110.12387 * 82.70621 * 18 17 15 30 30 H 1.08994 * 109.83253 * 238.77959 * 20 19 18 31 31 H 1.08996 * 109.90945 * 117.83959 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 3.0959 1.6964 -1.2125 5 1 3.0959 1.6965 1.2125 6 1 1.2772 2.7465 0.0006 7 6 2.0080 -1.2119 0.0005 8 1 3.0103 -1.2569 -0.3993 9 6 1.4028 -2.3776 0.5244 10 6 0.4074 -2.2758 1.5140 11 6 -0.1786 -3.4164 2.0128 12 6 0.2159 -4.6633 1.5517 13 6 1.1995 -4.7757 0.5814 14 6 1.7954 -3.6478 0.0643 15 6 2.8640 -3.7731 -0.9909 16 1 3.2877 -2.7976 -1.2292 17 6 3.9732 -4.7623 -0.5396 18 6 4.4798 -5.2785 -1.9128 19 8 3.3099 -5.3555 -2.7427 20 6 2.3066 -4.4548 -2.2590 21 1 -0.4850 -0.8356 -0.0865 22 1 0.1013 -1.3058 1.8773 23 1 -0.9453 -3.3407 2.7696 24 1 -0.2463 -5.5535 1.9518 25 1 1.4993 -5.7518 0.2299 26 1 4.7630 -4.2448 0.0049 27 1 3.5563 -5.5752 0.0549 28 1 4.9321 -6.2642 -1.8042 29 1 5.1981 -4.5762 -2.3357 30 1 1.4003 -5.0082 -2.0133 31 1 2.0866 -3.7027 -3.0167 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214483471.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:58 Heat of formation + Delta-G solvation = -59.870058 kcal Electronic energy + Delta-G solvation = -14580.944719 eV Core-core repulsion = 12211.451177 eV Total energy + Delta-G solvation = -2369.493542 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.78481 -39.12113 -35.75921 -34.16288 -31.34042 -30.89080 -29.25314 -26.91549 -23.96796 -23.27301 -22.64199 -20.94972 -19.64985 -17.72880 -17.19425 -16.49737 -16.07679 -15.91842 -15.61483 -15.00840 -14.31033 -14.13710 -14.06379 -13.82136 -13.30564 -12.78911 -12.77623 -12.42930 -12.23184 -12.12474 -12.01490 -11.80778 -11.33961 -11.08627 -10.81494 -10.49619 -9.48548 -9.42132 -9.06896 -6.41073 0.88265 0.94018 1.50425 1.63752 1.77978 2.33667 2.69429 2.96002 3.43351 3.85031 3.89728 4.15973 4.27819 4.36040 4.36365 4.43846 4.58991 4.76507 4.82589 4.89828 4.97627 5.00577 5.07218 5.22955 5.36958 5.49757 5.76325 5.84152 5.95317 6.01943 6.04581 6.29760 6.41779 6.82864 6.99009 8.08250 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.024778 B = 0.011261 C = 0.008499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.774768 B = 2485.764636 C = 3293.696880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.004 3.996 3 Si 1.111 2.889 4 H -0.257 1.257 5 H -0.265 1.265 6 H -0.275 1.275 7 C -0.552 4.552 8 H 0.078 0.922 9 C 0.076 3.924 10 C -0.240 4.240 11 C -0.096 4.096 12 C -0.246 4.246 13 C -0.081 4.081 14 C -0.190 4.190 15 C -0.061 4.061 16 H 0.076 0.924 17 C -0.143 4.143 18 C 0.051 3.949 19 O -0.404 6.404 20 C 0.065 3.935 21 H 0.282 0.718 22 H 0.084 0.916 23 H 0.111 0.889 24 H 0.119 0.881 25 H 0.116 0.884 26 H 0.087 0.913 27 H 0.077 0.923 28 H 0.107 0.893 29 H 0.068 0.932 30 H 0.063 0.937 31 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.343 -4.950 -1.093 8.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C -0.212 4.212 3 Si 0.928 3.072 4 H -0.181 1.181 5 H -0.190 1.190 6 H -0.200 1.200 7 C -0.580 4.580 8 H 0.096 0.904 9 C 0.073 3.927 10 C -0.259 4.259 11 C -0.114 4.114 12 C -0.265 4.265 13 C -0.099 4.099 14 C -0.191 4.191 15 C -0.079 4.079 16 H 0.095 0.905 17 C -0.180 4.180 18 C -0.025 4.025 19 O -0.324 6.324 20 C -0.011 4.011 21 H 0.094 0.906 22 H 0.102 0.898 23 H 0.129 0.871 24 H 0.137 0.863 25 H 0.134 0.866 26 H 0.105 0.895 27 H 0.096 0.904 28 H 0.125 0.875 29 H 0.086 0.914 30 H 0.081 0.919 31 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 6.060 -3.448 -1.223 7.079 hybrid contribution -0.320 -1.358 0.293 1.425 sum 5.741 -4.806 -0.930 7.545 Atomic orbital electron populations 1.70566 1.09049 1.33070 1.31975 1.28291 0.95658 1.07337 0.89907 0.83083 0.74843 0.70180 0.79058 1.18133 1.18955 1.19987 1.20688 1.03324 0.94922 1.39093 0.90382 1.17873 0.91262 0.93324 0.90237 1.21143 1.05210 0.97041 1.02515 1.20921 0.98547 0.93047 0.98862 1.20755 1.04347 0.96473 1.04926 1.20715 0.95919 0.97021 0.96203 1.19622 1.04007 0.92779 1.02728 1.21319 0.94414 0.99258 0.92941 0.90539 1.23399 0.98007 0.98663 0.97949 1.23580 0.87713 1.02522 0.88705 1.88303 1.26289 1.63316 1.54489 1.23137 0.91277 0.91724 0.94955 0.90619 0.89796 0.87131 0.86258 0.86632 0.89451 0.90391 0.87540 0.91407 0.91903 0.92394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -44.72 12.36 21.83 0.27 -44.45 16 2 C 0.00 0.19 4.93 85.26 0.42 0.61 16 3 Si 1.11 43.06 30.00 68.60 2.06 45.12 16 4 H -0.26 -9.10 7.11 99.48 0.71 -8.40 16 5 H -0.26 -9.74 7.11 99.48 0.71 -9.03 16 6 H -0.28 -10.61 7.11 99.48 0.71 -9.90 16 7 C -0.55 -28.82 8.28 23.46 0.19 -28.62 16 8 H 0.08 3.93 6.31 -2.91 -0.02 3.91 16 9 C 0.08 3.92 5.27 -21.29 -0.11 3.81 16 10 C -0.24 -12.38 7.97 22.73 0.18 -12.20 16 11 C -0.10 -4.34 10.02 22.22 0.22 -4.11 16 12 C -0.25 -10.29 10.05 22.46 0.23 -10.06 16 13 C -0.08 -3.37 8.19 22.22 0.18 -3.18 16 14 C -0.19 -8.65 4.98 -19.41 -0.10 -8.75 16 15 C -0.06 -2.38 3.04 -10.27 -0.03 -2.41 16 16 H 0.08 3.24 5.79 -2.39 -0.01 3.23 16 17 C -0.14 -4.45 6.56 32.15 0.21 -4.24 16 18 C 0.05 1.39 7.78 72.74 0.57 1.95 16 19 O -0.40 -13.85 11.36 -148.98 -1.69 -15.54 16 20 C 0.07 2.43 7.32 72.45 0.53 2.96 16 21 H 0.28 15.98 6.75 -92.71 -0.63 15.35 16 22 H 0.08 4.59 6.60 -2.91 -0.02 4.57 16 23 H 0.11 4.42 8.06 -2.91 -0.02 4.39 16 24 H 0.12 4.23 8.06 -2.91 -0.02 4.21 16 25 H 0.12 4.21 7.24 -2.91 -0.02 4.19 16 26 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 27 H 0.08 2.39 6.66 -2.39 -0.02 2.38 16 28 H 0.11 2.32 8.14 -2.39 -0.02 2.30 16 29 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.06 2.38 7.22 -2.39 -0.02 2.36 16 31 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 Total: -1.00 -57.60 254.67 4.39 -53.21 By element: Atomic # 1 Polarization: 24.64 SS G_CDS: 1.26 Total: 25.90 kcal Atomic # 6 Polarization: -66.73 SS G_CDS: 2.49 Total: -64.24 kcal Atomic # 7 Polarization: -44.72 SS G_CDS: 0.27 Total: -44.45 kcal Atomic # 8 Polarization: -13.85 SS G_CDS: -1.69 Total: -15.54 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.06 Total: 45.12 kcal Total: -57.60 4.39 -53.21 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214483471.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.665 kcal (2) G-P(sol) polarization free energy of solvation -57.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds