Wall clock time and date at job start Mon Mar 30 2020 02:58:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.36226 * 119.72926 * 2 1 4 4 C 1.40819 * 120.10239 * 180.21207 * 3 2 1 5 5 C 1.41214 * 120.36048 * 180.11700 * 4 3 2 6 6 H 1.08004 * 119.99863 * 26.80649 * 5 4 3 7 7 C 1.39885 * 119.99735 * 206.80965 * 5 4 3 8 8 N 1.30888 * 119.99934 * 197.05119 * 7 5 4 9 9 Si 1.86796 * 120.00143 * 17.05414 * 7 5 4 10 10 H 1.48505 * 109.47300 * 264.87674 * 9 7 5 11 11 H 1.48493 * 109.47285 * 24.88018 * 9 7 5 12 12 H 1.48504 * 109.47031 * 144.87862 * 9 7 5 13 13 C 1.40938 * 119.27683 * 359.84316 * 4 3 2 14 14 C 1.36003 * 119.77353 * 359.96296 * 13 4 3 15 15 C 1.39569 * 121.03581 * 359.86824 * 14 13 4 16 16 O 1.35999 * 111.08841 * 180.73047 * 15 14 13 17 17 C 1.43727 * 109.33014 * 340.93912 * 16 15 14 18 18 H 1.09005 * 110.72944 * 146.26390 * 17 16 15 19 19 C 1.52997 * 110.73413 * 269.57693 * 17 16 15 20 20 C 1.51696 * 132.02015 * 179.50192 * 14 13 4 21 21 H 1.09001 * 109.47280 * 270.30881 * 1 2 3 22 22 H 1.09005 * 109.46787 * 30.30427 * 1 2 3 23 23 H 1.08999 * 109.47152 * 150.30038 * 1 2 3 24 24 H 1.08003 * 119.94366 * 359.92744 * 3 2 1 25 25 H 0.96998 * 120.00373 * 179.97438 * 8 7 5 26 26 H 1.07998 * 120.11388 * 179.97438 * 13 4 3 27 27 H 1.09005 * 109.46895 * 173.45735 * 19 17 16 28 28 H 1.08998 * 109.46829 * 293.45303 * 19 17 16 29 29 H 1.09000 * 109.47603 * 53.45387 * 19 17 16 30 30 H 1.09002 * 110.94098 * 313.97795 * 20 14 13 31 31 H 1.09001 * 110.94675 * 77.66424 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1826 1.1830 0.0000 4 6 3.5907 1.1921 -0.0045 5 6 4.2965 2.4152 -0.0020 6 1 3.8447 3.2986 0.4247 7 6 5.5808 2.4827 -0.5523 8 7 6.3635 3.4918 -0.2656 9 14 6.1788 1.1327 -1.6965 10 1 6.9521 0.1312 -0.9190 11 1 5.0121 0.4710 -2.3338 12 1 7.0477 1.7225 -2.7465 13 6 4.2879 -0.0327 -0.0056 14 6 3.5961 -1.2036 -0.0016 15 6 2.2005 -1.2148 0.0064 16 8 1.7214 -2.4875 0.0254 17 6 2.7511 -3.3900 -0.4118 18 1 2.6740 -4.3446 0.1088 19 6 2.6876 -3.5909 -1.9272 20 6 4.0498 -2.6511 -0.0113 21 1 -0.3634 0.0055 1.0276 22 1 -0.3633 0.8873 -0.5186 23 1 -0.3633 -0.8927 -0.5092 24 1 1.6372 2.1152 -0.0012 25 1 7.2542 3.5384 -0.6468 26 1 5.3679 -0.0414 -0.0095 27 1 3.5435 -4.1830 -2.2514 28 1 1.7661 -4.1124 -2.1862 29 1 2.7079 -2.6208 -2.4236 30 1 4.8325 -2.8091 -0.7533 31 1 4.3850 -2.9611 0.9784 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214485213.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:32 Heat of formation + Delta-G solvation = -26.909053 kcal Electronic energy + Delta-G solvation = -14646.203786 eV Core-core repulsion = 12278.139540 eV Total energy + Delta-G solvation = -2368.064246 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.17088 -36.81123 -33.68208 -32.73988 -30.99894 -30.18238 -26.56835 -26.01526 -24.70457 -21.24642 -20.34943 -20.00494 -17.29191 -16.21584 -15.84218 -15.18855 -14.85567 -13.74603 -13.33188 -13.13442 -12.78837 -12.63950 -12.50639 -12.02349 -11.90136 -11.75854 -11.54650 -11.39803 -10.92446 -10.77300 -10.63247 -10.35079 -10.07885 -9.80497 -9.36879 -9.04970 -7.62164 -7.11675 -6.94785 -4.39885 2.50264 2.58938 3.07626 3.19009 3.29706 3.96555 4.14636 4.42873 5.04207 5.19866 5.27856 5.42188 5.61327 5.76978 5.77900 5.93198 6.07838 6.11895 6.16699 6.27235 6.35462 6.44132 6.52082 6.69261 6.80022 6.98188 7.27014 7.44005 7.64000 7.73181 7.88953 8.20473 8.34936 8.66644 8.80132 10.08003 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.031055 B = 0.011676 C = 0.009208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.404620 B = 2397.518228 C = 3040.048880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.057 4.057 3 C -0.188 4.188 4 C 0.082 3.918 5 C -0.443 4.443 6 H 0.092 0.908 7 C 0.082 3.918 8 N -0.811 5.811 9 Si 0.911 3.089 10 H -0.272 1.272 11 H -0.244 1.244 12 H -0.292 1.292 13 C -0.201 4.201 14 C -0.118 4.118 15 C -0.035 4.035 16 O -0.310 6.310 17 C 0.080 3.920 18 H 0.098 0.902 19 C -0.168 4.168 20 C -0.108 4.108 21 H 0.056 0.944 22 H 0.056 0.944 23 H 0.055 0.945 24 H 0.109 0.891 25 H 0.285 0.715 26 H 0.101 0.899 27 H 0.063 0.937 28 H 0.059 0.941 29 H 0.063 0.937 30 H 0.076 0.924 31 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.615 -9.582 -2.214 10.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.058 4.058 3 C -0.207 4.207 4 C 0.079 3.921 5 C -0.471 4.471 6 H 0.110 0.890 7 C -0.136 4.136 8 N -0.435 5.435 9 Si 0.739 3.261 10 H -0.199 1.199 11 H -0.167 1.167 12 H -0.220 1.220 13 C -0.220 4.220 14 C -0.118 4.118 15 C -0.078 4.078 16 O -0.226 6.226 17 C 0.023 3.977 18 H 0.116 0.884 19 C -0.225 4.225 20 C -0.145 4.145 21 H 0.075 0.925 22 H 0.075 0.925 23 H 0.074 0.926 24 H 0.127 0.873 25 H 0.095 0.905 26 H 0.118 0.882 27 H 0.082 0.918 28 H 0.078 0.922 29 H 0.082 0.918 30 H 0.094 0.906 31 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -3.611 -9.460 -2.163 10.354 hybrid contribution 0.777 -0.482 -0.498 1.041 sum -2.834 -9.942 -2.661 10.675 Atomic orbital electron populations 1.20610 0.92927 1.01292 1.01032 1.18508 0.94304 0.89982 1.02978 1.20397 0.93796 0.95131 1.11383 1.17621 0.91820 0.92243 0.90426 1.19383 0.98165 0.96192 1.33395 0.89036 1.26143 0.95498 0.96326 0.95617 1.69708 1.07972 1.30038 1.35805 0.86331 0.79542 0.80360 0.79866 1.19853 1.16736 1.22023 1.19952 0.97963 0.91280 1.12830 1.20035 0.93760 0.93641 1.04413 1.18827 0.91188 0.84166 1.13666 1.86643 1.38323 1.14266 1.83391 1.23103 0.86544 0.93314 0.94771 0.88368 1.22208 1.01732 1.02695 0.95900 1.21792 0.97651 0.93219 1.01847 0.92494 0.92504 0.92592 0.87266 0.90501 0.88188 0.91757 0.92164 0.91757 0.90568 0.90282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.82 9.96 36.01 0.36 -1.46 16 2 C -0.06 -1.26 5.87 -104.73 -0.61 -1.88 16 3 C -0.19 -4.44 9.34 -39.33 -0.37 -4.80 16 4 C 0.08 2.10 5.19 -106.77 -0.55 1.55 16 5 C -0.44 -12.03 9.59 -37.84 -0.36 -12.39 16 6 H 0.09 2.58 8.06 -52.48 -0.42 2.16 16 7 C 0.08 2.18 5.44 -17.34 -0.09 2.08 16 8 N -0.81 -21.71 13.93 55.54 0.77 -20.94 16 9 Si 0.91 21.04 24.41 -169.99 -4.15 16.89 16 10 H -0.27 -6.09 6.68 56.52 0.38 -5.71 16 11 H -0.24 -5.78 6.71 56.52 0.38 -5.40 16 12 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 13 C -0.20 -4.97 7.04 -39.36 -0.28 -5.24 16 14 C -0.12 -2.66 6.20 -104.44 -0.65 -3.31 16 15 C -0.03 -0.78 6.63 -38.47 -0.25 -1.04 16 16 O -0.31 -6.28 10.66 -19.74 -0.21 -6.49 16 17 C 0.08 1.30 4.31 -25.84 -0.11 1.19 16 18 H 0.10 1.31 8.14 -51.93 -0.42 0.89 16 19 C -0.17 -2.43 9.50 37.16 0.35 -2.08 16 20 C -0.11 -1.93 6.65 -26.50 -0.18 -2.11 16 21 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 22 H 0.06 0.92 8.08 -51.93 -0.42 0.50 16 23 H 0.06 0.96 8.00 -51.93 -0.42 0.55 16 24 H 0.11 2.41 8.06 -52.48 -0.42 1.98 16 25 H 0.28 6.91 8.30 -40.82 -0.34 6.57 16 26 H 0.10 2.46 4.25 -52.49 -0.22 2.24 16 27 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.06 1.08 8.07 -51.93 -0.42 0.66 16 30 H 0.08 1.25 7.92 -51.93 -0.41 0.84 16 31 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 LS Contribution 256.66 15.07 3.87 3.87 Total: -1.00 -28.40 256.66 -6.50 -34.90 By element: Atomic # 1 Polarization: 5.29 SS G_CDS: -4.03 Total: 1.27 kcal Atomic # 6 Polarization: -26.74 SS G_CDS: -2.75 Total: -29.49 kcal Atomic # 7 Polarization: -21.71 SS G_CDS: 0.77 Total: -20.94 kcal Atomic # 8 Polarization: -6.28 SS G_CDS: -0.21 Total: -6.49 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -4.15 Total: 16.89 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -28.40 -6.50 -34.90 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214485213.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.988 kcal (2) G-P(sol) polarization free energy of solvation -28.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds