Wall clock time and date at job start Mon Mar 30 2020 02:58:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.36226 * 119.72926 * 2 1 4 4 C 1.40819 * 120.10239 * 180.21207 * 3 2 1 5 5 C 1.41214 * 120.36048 * 180.11700 * 4 3 2 6 6 H 1.08004 * 119.99863 * 26.80649 * 5 4 3 7 7 C 1.39885 * 119.99735 * 206.80965 * 5 4 3 8 8 N 1.30888 * 119.99934 * 197.05119 * 7 5 4 9 9 Si 1.86796 * 120.00143 * 17.05414 * 7 5 4 10 10 H 1.48505 * 109.47300 * 264.87674 * 9 7 5 11 11 H 1.48493 * 109.47285 * 24.88018 * 9 7 5 12 12 H 1.48504 * 109.47031 * 144.87862 * 9 7 5 13 13 C 1.40938 * 119.27683 * 359.84316 * 4 3 2 14 14 C 1.36003 * 119.77353 * 359.96296 * 13 4 3 15 15 C 1.39569 * 121.03581 * 359.86824 * 14 13 4 16 16 O 1.35999 * 111.08841 * 180.73047 * 15 14 13 17 17 C 1.43727 * 109.33014 * 340.93912 * 16 15 14 18 18 H 1.09005 * 110.72944 * 146.26390 * 17 16 15 19 19 C 1.52997 * 110.73413 * 269.57693 * 17 16 15 20 20 C 1.51696 * 132.02015 * 179.50192 * 14 13 4 21 21 H 1.09001 * 109.47280 * 270.30881 * 1 2 3 22 22 H 1.09005 * 109.46787 * 30.30427 * 1 2 3 23 23 H 1.08999 * 109.47152 * 150.30038 * 1 2 3 24 24 H 1.08003 * 119.94366 * 359.92744 * 3 2 1 25 25 H 0.96998 * 120.00373 * 179.97438 * 8 7 5 26 26 H 1.07998 * 120.11388 * 179.97438 * 13 4 3 27 27 H 1.09005 * 109.46895 * 173.45735 * 19 17 16 28 28 H 1.08998 * 109.46829 * 293.45303 * 19 17 16 29 29 H 1.09000 * 109.47603 * 53.45387 * 19 17 16 30 30 H 1.09002 * 110.94098 * 313.97795 * 20 14 13 31 31 H 1.09001 * 110.94675 * 77.66424 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1826 1.1830 0.0000 4 6 3.5907 1.1921 -0.0045 5 6 4.2965 2.4152 -0.0020 6 1 3.8447 3.2986 0.4247 7 6 5.5808 2.4827 -0.5523 8 7 6.3635 3.4918 -0.2656 9 14 6.1788 1.1327 -1.6965 10 1 6.9521 0.1312 -0.9190 11 1 5.0121 0.4710 -2.3338 12 1 7.0477 1.7225 -2.7465 13 6 4.2879 -0.0327 -0.0056 14 6 3.5961 -1.2036 -0.0016 15 6 2.2005 -1.2148 0.0064 16 8 1.7214 -2.4875 0.0254 17 6 2.7511 -3.3900 -0.4118 18 1 2.6740 -4.3446 0.1088 19 6 2.6876 -3.5909 -1.9272 20 6 4.0498 -2.6511 -0.0113 21 1 -0.3634 0.0055 1.0276 22 1 -0.3633 0.8873 -0.5186 23 1 -0.3633 -0.8927 -0.5092 24 1 1.6372 2.1152 -0.0012 25 1 7.2542 3.5384 -0.6468 26 1 5.3679 -0.0414 -0.0095 27 1 3.5435 -4.1830 -2.2514 28 1 1.7661 -4.1124 -2.1862 29 1 2.7079 -2.6208 -2.4236 30 1 4.8325 -2.8091 -0.7533 31 1 4.3850 -2.9611 0.9784 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214485213.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:32 Heat of formation + Delta-G solvation = -43.612559 kcal Electronic energy + Delta-G solvation = -14646.928105 eV Core-core repulsion = 12278.139540 eV Total energy + Delta-G solvation = -2368.788564 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.78212 -38.55647 -35.54367 -34.38173 -32.54212 -31.84647 -28.12933 -27.59879 -26.50265 -22.76331 -22.07873 -21.67511 -19.18449 -17.97419 -17.43566 -16.75178 -16.56796 -15.43467 -14.98005 -14.68472 -14.33301 -14.22951 -14.13622 -13.71415 -13.52348 -13.15239 -12.98955 -12.92334 -12.63087 -12.42255 -12.06139 -12.05047 -11.83364 -11.59916 -11.13287 -10.89265 -9.39276 -8.92865 -8.91161 -6.41282 0.68236 0.75156 1.21279 1.35604 1.44872 2.09171 2.46648 2.72498 3.39280 3.65088 3.88822 4.08241 4.15551 4.36072 4.37618 4.59490 4.64557 4.73314 4.82615 4.87211 4.89984 4.97191 5.03968 5.10145 5.25528 5.28410 5.46000 5.64633 5.81997 5.85936 6.06160 6.25199 6.47589 6.75472 6.86207 8.17519 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.031055 B = 0.011676 C = 0.009208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.404620 B = 2397.518228 C = 3040.048880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.069 4.069 3 C -0.198 4.198 4 C 0.059 3.941 5 C -0.478 4.478 6 H 0.060 0.940 7 C 0.046 3.954 8 N -0.850 5.850 9 Si 0.966 3.034 10 H -0.259 1.259 11 H -0.256 1.256 12 H -0.278 1.278 13 C -0.215 4.215 14 C -0.135 4.135 15 C -0.025 4.025 16 O -0.317 6.317 17 C 0.075 3.925 18 H 0.139 0.861 19 C -0.165 4.165 20 C -0.109 4.109 21 H 0.071 0.929 22 H 0.071 0.929 23 H 0.065 0.935 24 H 0.115 0.885 25 H 0.293 0.707 26 H 0.098 0.902 27 H 0.093 0.907 28 H 0.076 0.924 29 H 0.034 0.966 30 H 0.093 0.907 31 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.256 -12.880 -2.839 13.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.070 4.070 3 C -0.217 4.217 4 C 0.057 3.943 5 C -0.508 4.508 6 H 0.078 0.922 7 C -0.168 4.168 8 N -0.477 5.477 9 Si 0.790 3.210 10 H -0.185 1.185 11 H -0.180 1.180 12 H -0.204 1.204 13 C -0.234 4.234 14 C -0.136 4.136 15 C -0.069 4.069 16 O -0.234 6.234 17 C 0.019 3.981 18 H 0.156 0.844 19 C -0.222 4.222 20 C -0.145 4.145 21 H 0.090 0.910 22 H 0.090 0.910 23 H 0.084 0.916 24 H 0.133 0.867 25 H 0.104 0.896 26 H 0.115 0.885 27 H 0.112 0.888 28 H 0.095 0.905 29 H 0.053 0.947 30 H 0.112 0.888 31 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -4.256 -12.767 -2.783 13.742 hybrid contribution 0.798 0.380 -0.247 0.918 sum -3.457 -12.387 -3.030 13.212 Atomic orbital electron populations 1.20634 0.89782 1.02566 1.02356 1.18949 0.96796 0.89447 1.01815 1.20581 0.93329 0.96358 1.11444 1.17787 0.92888 0.92269 0.91377 1.19363 0.99485 0.96049 1.35925 0.92220 1.26780 0.95292 0.98273 0.96428 1.69733 1.08801 1.31716 1.37457 0.85501 0.78813 0.78246 0.78426 1.18460 1.18028 1.20437 1.20016 0.98022 0.91773 1.13556 1.20551 0.94299 0.95519 1.03203 1.19140 0.91368 0.85312 1.11070 1.86637 1.39802 1.13440 1.83474 1.23542 0.84370 0.93672 0.96470 0.84370 1.22218 1.04051 1.01795 0.94173 1.21973 0.99075 0.89916 1.03576 0.91016 0.90968 0.91607 0.86740 0.89614 0.88471 0.88826 0.90504 0.94668 0.88829 0.88556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.23 9.96 71.24 0.71 -2.52 16 2 C -0.07 -2.98 5.87 -19.93 -0.12 -3.10 16 3 C -0.20 -9.47 9.34 22.43 0.21 -9.26 16 4 C 0.06 3.13 5.19 -21.26 -0.11 3.02 16 5 C -0.48 -27.41 9.59 23.40 0.22 -27.19 16 6 H 0.06 3.64 8.06 -2.91 -0.02 3.62 16 7 C 0.05 2.53 5.44 85.23 0.46 3.00 16 8 N -0.85 -47.29 13.93 21.82 0.30 -46.98 16 9 Si 0.97 43.79 24.41 68.60 1.67 45.46 16 10 H -0.26 -11.06 6.68 99.48 0.66 -10.39 16 11 H -0.26 -11.98 6.71 99.48 0.67 -11.31 16 12 H -0.28 -11.74 7.11 99.48 0.71 -11.04 16 13 C -0.21 -10.57 7.04 22.41 0.16 -10.41 16 14 C -0.13 -5.85 6.20 -19.74 -0.12 -5.98 16 15 C -0.02 -1.06 6.63 22.99 0.15 -0.90 16 16 O -0.32 -11.70 10.66 -93.54 -1.00 -12.70 16 17 C 0.08 2.11 4.31 31.17 0.13 2.24 16 18 H 0.14 2.84 8.14 -2.38 -0.02 2.82 16 19 C -0.17 -4.06 9.50 71.98 0.68 -3.38 16 20 C -0.11 -3.47 6.65 30.74 0.20 -3.26 16 21 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 22 H 0.07 2.17 8.08 -2.38 -0.02 2.15 16 23 H 0.06 2.06 8.00 -2.39 -0.02 2.04 16 24 H 0.11 5.19 8.06 -2.91 -0.02 5.16 16 25 H 0.29 14.64 8.30 -92.71 -0.77 13.87 16 26 H 0.10 4.75 4.25 -2.91 -0.01 4.74 16 27 H 0.09 1.77 8.14 -2.38 -0.02 1.75 16 28 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 29 H 0.03 1.07 8.07 -2.39 -0.02 1.05 16 30 H 0.09 2.68 7.92 -2.39 -0.02 2.66 16 31 H 0.10 2.76 8.14 -2.39 -0.02 2.74 16 Total: -1.00 -62.92 256.66 4.61 -58.31 By element: Atomic # 1 Polarization: 12.61 SS G_CDS: 1.04 Total: 13.65 kcal Atomic # 6 Polarization: -60.33 SS G_CDS: 2.59 Total: -57.74 kcal Atomic # 7 Polarization: -47.29 SS G_CDS: 0.30 Total: -46.98 kcal Atomic # 8 Polarization: -11.70 SS G_CDS: -1.00 Total: -12.70 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 1.67 Total: 45.46 kcal Total: -62.92 4.61 -58.31 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214485213.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.696 kcal (2) G-P(sol) polarization free energy of solvation -62.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds