Wall clock time and date at job start Mon Mar 30 2020 02:31:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.46501 * 119.99997 * 2 1 4 4 C 1.50696 * 109.47405 * 270.00173 * 3 2 1 5 5 H 1.08004 * 119.99899 * 0.02562 * 4 3 2 6 6 C 1.37880 * 120.00220 * 179.97438 * 4 3 2 7 7 N 1.31514 * 120.00015 * 180.02562 * 6 4 3 8 8 Si 1.86800 * 119.99993 * 0.02562 * 6 4 3 9 9 H 1.48500 * 109.47014 * 89.99663 * 8 6 4 10 10 H 1.48497 * 109.46933 * 209.99812 * 8 6 4 11 11 H 1.48502 * 109.46689 * 329.99781 * 8 6 4 12 12 C 1.38425 * 120.00323 * 180.02562 * 2 1 3 13 13 N 1.32584 * 119.13819 * 179.97438 * 12 2 1 14 14 C 1.32204 * 120.99086 * 179.72126 * 13 12 2 15 15 C 1.38624 * 119.27359 * 359.97438 * 14 13 12 16 16 C 1.39696 * 118.41706 * 0.02562 * 15 14 13 17 17 C 1.43201 * 120.51445 * 179.97438 * 16 15 14 18 18 N 5.74595 * 83.28359 * 179.78941 * 2 1 3 19 19 N 1.32279 * 119.13299 * 359.72927 * 12 2 1 20 20 H 1.09000 * 109.47146 * 269.99564 * 1 2 3 21 21 H 1.08997 * 109.47555 * 29.99403 * 1 2 3 22 22 H 1.08999 * 109.47092 * 149.99862 * 1 2 3 23 23 H 1.09004 * 109.47409 * 30.00265 * 3 2 1 24 24 H 1.09001 * 109.47490 * 150.00231 * 3 2 1 25 25 H 0.96997 * 120.00411 * 180.02562 * 7 6 4 26 26 H 1.08002 * 120.36131 * 179.97438 * 14 13 12 27 27 H 1.08003 * 120.78648 * 180.02562 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.0973 1.0963 -2.2417 6 6 3.1259 2.8781 -1.6727 7 7 3.3446 3.2580 -2.9126 8 14 3.7329 3.9293 -0.2528 9 1 5.1064 3.5082 0.1230 10 1 3.7477 5.3561 -0.6643 11 1 2.8269 3.7592 0.9115 12 6 2.1571 -1.1988 -0.0005 13 7 3.4828 -1.1787 -0.0010 14 6 4.1806 -2.3016 0.0039 15 6 3.5112 -3.5156 0.0103 16 6 2.1143 -3.5045 0.0107 17 6 1.3775 -4.7324 0.0166 18 7 0.7929 -5.7065 0.0210 19 7 1.4785 -2.3342 0.0044 20 1 -0.3633 -0.0001 1.0277 21 1 -0.3634 0.8900 -0.5137 22 1 -0.3633 -0.8900 -0.5138 23 1 1.6084 2.0284 0.5139 24 1 3.1499 1.1385 0.5138 25 1 3.8214 4.0839 -3.0899 26 1 5.2602 -2.2735 0.0031 27 1 4.0569 -4.4476 0.0149 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000231894962.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:28 Heat of formation + Delta-G solvation = 84.693534 kcal Electronic energy + Delta-G solvation = -13737.453983 eV Core-core repulsion = 11302.981597 eV Total energy + Delta-G solvation = -2434.472387 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.086 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.96192 -38.25704 -37.45471 -34.84959 -34.57901 -32.34758 -30.29593 -27.44273 -26.53582 -24.74136 -22.90606 -20.23752 -19.05061 -18.70237 -17.34851 -16.58196 -16.36898 -16.18606 -15.47122 -15.07404 -14.88576 -14.47634 -14.27250 -14.05832 -13.99792 -13.53222 -13.16085 -12.67700 -12.37066 -12.06503 -11.86299 -11.75303 -11.68842 -11.02654 -10.74879 -10.13620 -8.69784 -8.25825 -6.31114 -0.40322 0.29193 1.21126 1.43021 1.44933 1.54079 1.86062 1.96672 2.38688 2.40840 3.02491 3.09276 3.50149 3.74122 4.07726 4.35977 4.50421 4.61161 4.66216 4.86940 4.96395 4.99981 5.34757 5.51425 5.78452 5.98784 6.15569 6.31079 6.58810 6.70165 7.27939 7.38524 8.91191 Molecular weight = 218.09amu Principal moments of inertia in cm(-1) A = 0.044903 B = 0.007521 C = 0.007062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.417817 B = 3722.170723 C = 3963.911431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.105 3.895 2 N -0.577 5.577 3 C 0.240 3.760 4 C -0.528 4.528 5 H 0.022 0.978 6 C 0.013 3.987 7 N -0.949 5.949 8 Si 0.950 3.050 9 H -0.265 1.265 10 H -0.285 1.285 11 H -0.240 1.240 12 C 0.562 3.438 13 N -0.569 5.569 14 C 0.201 3.799 15 C -0.229 4.229 16 C 0.262 3.738 17 C 0.294 3.706 18 N -0.409 5.409 19 N -0.571 5.571 20 H 0.068 0.932 21 H 0.069 0.931 22 H 0.070 0.930 23 H 0.046 0.954 24 H 0.045 0.955 25 H 0.267 0.733 26 H 0.215 0.785 27 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.643 -9.609 9.401 13.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.290 5.290 3 C 0.118 3.882 4 C -0.567 4.567 5 H 0.040 0.960 6 C -0.185 4.185 7 N -0.589 5.589 8 Si 0.773 3.227 9 H -0.190 1.190 10 H -0.211 1.211 11 H -0.164 1.164 12 C 0.206 3.794 13 N -0.291 5.291 14 C 0.031 3.969 15 C -0.258 4.258 16 C 0.114 3.886 17 C -0.023 4.023 18 N -0.087 5.087 19 N -0.298 5.298 20 H 0.087 0.913 21 H 0.088 0.912 22 H 0.089 0.911 23 H 0.064 0.936 24 H 0.063 0.937 25 H 0.076 0.924 26 H 0.232 0.768 27 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges 0.127 -9.838 9.309 13.545 hybrid contribution 0.722 0.353 -0.244 0.839 sum 0.848 -9.486 9.065 13.148 Atomic orbital electron populations 1.21636 0.77214 1.02874 1.02027 1.46443 1.06572 1.02185 1.73824 1.19454 0.93040 0.80268 0.95450 1.21487 1.36431 1.06611 0.92197 0.96009 1.25813 0.95387 0.98773 0.98494 1.70063 1.42911 1.24460 1.21500 0.85686 0.80047 0.77340 0.79666 1.18974 1.21067 1.16354 1.19166 0.85588 0.85737 0.88913 1.68072 1.06887 1.34149 1.19993 1.23830 1.02349 0.85169 0.85587 1.22759 0.92271 1.02798 1.08008 1.16429 0.90439 0.85675 0.96025 1.24821 0.92242 0.91741 0.93521 1.81240 1.07563 1.12208 1.07641 1.67636 1.41239 0.97345 1.23538 0.91346 0.91218 0.91142 0.93592 0.93704 0.92400 0.76819 0.78946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 3.55 10.44 127.77 1.33 4.88 15 2 N -0.58 -23.65 2.96 -740.34 -2.19 -25.84 15 3 C 0.24 10.89 4.23 85.63 0.36 11.26 15 4 C -0.53 -29.50 9.94 25.60 0.25 -29.24 15 5 H 0.02 1.40 8.06 -2.91 -0.02 1.37 15 6 C 0.01 0.73 5.47 84.66 0.46 1.19 15 7 N -0.95 -58.07 13.96 21.45 0.30 -57.77 15 8 Si 0.95 41.67 27.47 68.60 1.88 43.55 15 9 H -0.26 -11.24 7.11 99.48 0.71 -10.53 15 10 H -0.28 -12.38 7.11 99.48 0.71 -11.67 15 11 H -0.24 -9.47 6.54 99.48 0.65 -8.82 15 12 C 0.56 21.68 8.17 261.53 2.14 23.82 15 13 N -0.57 -20.69 9.09 -198.09 -1.80 -22.49 15 14 C 0.20 4.86 11.30 84.73 0.96 5.82 15 15 C -0.23 -4.68 9.89 22.71 0.22 -4.45 15 16 C 0.26 7.14 6.61 40.54 0.27 7.41 15 17 C 0.29 7.75 15.60 88.33 1.38 9.13 15 18 N -0.41 -11.65 18.54 19.00 0.35 -11.29 15 19 N -0.57 -19.60 9.05 -191.57 -1.73 -21.33 15 20 H 0.07 1.94 8.14 -2.39 -0.02 1.92 15 21 H 0.07 2.37 8.07 -2.39 -0.02 2.35 15 22 H 0.07 2.34 7.33 -2.39 -0.02 2.32 15 23 H 0.05 1.96 7.13 -2.38 -0.02 1.95 15 24 H 0.04 2.03 6.76 -2.39 -0.02 2.02 15 25 H 0.27 15.21 8.31 -92.71 -0.77 14.44 15 26 H 0.22 3.18 8.06 -2.91 -0.02 3.15 15 27 H 0.19 2.12 8.06 -2.91 -0.02 2.10 15 Total: -1.00 -70.08 253.38 5.33 -64.76 By element: Atomic # 1 Polarization: -0.53 SS G_CDS: 1.13 Total: 0.60 kcal Atomic # 6 Polarization: 22.43 SS G_CDS: 7.38 Total: 29.81 kcal Atomic # 7 Polarization: -133.65 SS G_CDS: -5.07 Total: -138.72 kcal Atomic # 14 Polarization: 41.67 SS G_CDS: 1.88 Total: 43.55 kcal Total: -70.08 5.33 -64.76 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000231894962.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.453 kcal (2) G-P(sol) polarization free energy of solvation -70.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.759 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds