Wall clock time and date at job start Mon Mar 30 2020 03:18:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.32570 * 120.00441 * 2 1 4 4 C 1.47810 * 120.00400 * 188.04669 * 3 2 1 5 5 C 1.39537 * 120.13817 * 221.67824 * 4 3 2 6 6 C 1.37976 * 119.85384 * 179.71402 * 5 4 3 7 7 C 1.38350 * 120.14058 * 0.53749 * 6 5 4 8 8 C 1.38347 * 120.28386 * 359.75816 * 7 6 5 9 9 C 1.37970 * 120.14403 * 359.96339 * 8 7 6 10 10 C 1.50698 * 120.00103 * 180.02562 * 2 1 3 11 11 H 1.09000 * 109.47772 * 188.19590 * 10 2 1 12 12 O 1.42901 * 109.46934 * 308.19418 * 10 2 1 13 13 C 1.50702 * 109.47360 * 68.19057 * 10 2 1 14 14 H 1.07996 * 119.99867 * 0.02562 * 13 10 2 15 15 C 1.37878 * 119.99847 * 180.02562 * 13 10 2 16 16 N 1.31523 * 119.99570 * 179.97438 * 15 13 10 17 17 Si 1.86796 * 120.00340 * 0.02562 * 15 13 10 18 18 H 1.48501 * 109.47139 * 89.99970 * 17 15 13 19 19 H 1.48500 * 109.47018 * 210.00174 * 17 15 13 20 20 H 1.48500 * 109.47001 * 330.00111 * 17 15 13 21 21 H 1.08997 * 109.47227 * 89.99838 * 1 2 3 22 22 H 1.09002 * 109.46662 * 329.99892 * 1 2 3 23 23 H 1.08998 * 109.47396 * 210.00115 * 1 2 3 24 24 H 1.08007 * 119.99604 * 8.04334 * 3 2 1 25 25 H 1.08002 * 120.07429 * 359.97438 * 5 4 3 26 26 H 1.07999 * 119.93297 * 180.27461 * 6 5 4 27 27 H 1.08001 * 119.85843 * 179.74121 * 7 6 5 28 28 H 1.08004 * 119.92451 * 179.97438 * 8 7 6 29 29 H 1.07999 * 120.07465 * 180.02562 * 9 8 7 30 30 H 0.96702 * 114.00320 * 59.99962 * 12 10 2 31 31 H 0.96996 * 119.99286 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1699 1.1480 0.0000 4 6 3.6371 1.1543 -0.1792 5 6 4.4336 2.0002 0.5935 6 6 5.8031 1.9970 0.4255 7 6 6.3858 1.1656 -0.5143 8 6 5.6010 0.3291 -1.2878 9 6 4.2310 0.3186 -1.1256 10 6 2.2605 -1.3051 -0.0006 11 1 3.3230 -1.1113 0.1460 12 8 1.7772 -2.1346 1.0579 13 6 2.0545 -2.0035 -1.3200 14 1 1.4399 -1.5477 -2.0821 15 6 2.6509 -3.2244 -1.5542 16 7 2.4707 -3.8341 -2.7055 17 14 3.7135 -4.0131 -0.2358 18 1 2.8687 -4.8718 0.6327 19 1 4.7655 -4.8414 -0.8780 20 1 4.3509 -2.9531 0.5859 21 1 -0.3633 0.0000 -1.0276 22 1 -0.3633 0.8900 0.5139 23 1 -0.3634 -0.8899 0.5138 24 1 1.6378 2.0788 0.1309 25 1 3.9796 2.6530 1.3244 26 1 6.4212 2.6480 1.0260 27 1 7.4579 1.1699 -0.6449 28 1 6.0620 -0.3173 -2.0201 29 1 3.6194 -0.3352 -1.7298 30 1 0.8364 -2.3483 0.9920 31 1 2.8906 -4.6928 -2.8704 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238024649.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:03 Heat of formation + Delta-G solvation = -15.697527 kcal Electronic energy + Delta-G solvation = -14571.172110 eV Core-core repulsion = 12203.594032 eV Total energy + Delta-G solvation = -2367.578078 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.91316 -36.78111 -33.71117 -32.35141 -30.49633 -30.31661 -27.46223 -26.06987 -22.86474 -21.75887 -21.15185 -18.05478 -17.33896 -16.22148 -15.15354 -14.88772 -14.68794 -14.01794 -13.74512 -13.10029 -12.88201 -12.67951 -12.40900 -12.10753 -12.01513 -11.69003 -11.48874 -10.99211 -10.70354 -10.55302 -10.44297 -9.81805 -9.35811 -8.94670 -8.70948 -8.56623 -8.30555 -7.48770 -6.19873 -4.31564 1.61592 1.94445 2.98608 3.41929 3.45367 3.60175 4.37730 4.45662 5.10105 5.29226 5.36099 5.44712 5.64318 5.68364 5.82796 5.89358 5.97513 6.17588 6.19492 6.25005 6.44413 6.50299 6.66157 6.87232 6.95196 7.10983 7.20928 7.27097 7.45175 7.54458 7.72156 8.22672 8.74937 8.94233 9.43390 10.89387 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.024198 B = 0.012843 C = 0.009950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.824149 B = 2179.607428 C = 2813.500629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.085 4.085 3 C -0.171 4.171 4 C -0.040 4.040 5 C -0.122 4.122 6 C -0.133 4.133 7 C -0.133 4.133 8 C -0.124 4.124 9 C -0.103 4.103 10 C 0.206 3.794 11 H 0.081 0.919 12 O -0.583 6.583 13 C -0.554 4.554 14 H 0.077 0.923 15 C 0.086 3.914 16 N -0.887 5.887 17 Si 0.904 3.096 18 H -0.278 1.278 19 H -0.304 1.304 20 H -0.265 1.265 21 H 0.072 0.928 22 H 0.052 0.948 23 H 0.062 0.938 24 H 0.109 0.891 25 H 0.115 0.885 26 H 0.113 0.887 27 H 0.113 0.887 28 H 0.119 0.881 29 H 0.157 0.843 30 H 0.359 0.641 31 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.193 8.962 4.927 10.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.086 4.086 3 C -0.190 4.190 4 C -0.040 4.040 5 C -0.140 4.140 6 C -0.151 4.151 7 C -0.151 4.151 8 C -0.142 4.142 9 C -0.120 4.120 10 C 0.149 3.851 11 H 0.099 0.901 12 O -0.389 6.389 13 C -0.591 4.591 14 H 0.095 0.905 15 C -0.119 4.119 16 N -0.523 5.523 17 Si 0.734 3.266 18 H -0.203 1.203 19 H -0.232 1.232 20 H -0.190 1.190 21 H 0.091 0.909 22 H 0.071 0.929 23 H 0.081 0.919 24 H 0.127 0.873 25 H 0.133 0.867 26 H 0.131 0.869 27 H 0.131 0.869 28 H 0.137 0.863 29 H 0.175 0.825 30 H 0.206 0.794 31 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 2.850 8.860 5.012 10.571 hybrid contribution -0.006 -0.483 0.336 0.589 sum 2.844 8.377 5.348 10.337 Atomic orbital electron populations 1.20696 0.92540 1.01268 1.02089 1.23009 0.95845 0.96773 0.92935 1.21189 0.91802 0.97130 1.08832 1.19059 0.93411 0.95817 0.95681 1.21188 0.93572 0.99682 0.99540 1.20912 0.94803 1.00142 0.99287 1.21102 0.99234 0.97526 0.97253 1.21157 0.94239 0.99002 0.99845 1.22200 0.95335 0.97096 0.97389 1.19549 0.94279 0.84204 0.87039 0.90130 1.86466 1.28896 1.71415 1.52166 1.21408 1.33270 1.04846 0.99600 0.90538 1.24994 0.95152 0.96588 0.95148 1.69952 1.43240 1.16044 1.23101 0.86366 0.79615 0.79389 0.81260 1.20339 1.23165 1.19012 0.90927 0.92921 0.91901 0.87347 0.86713 0.86883 0.86915 0.86300 0.82529 0.79406 0.92406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.83 9.87 36.00 0.36 -1.48 16 2 C -0.09 -1.71 4.94 -101.26 -0.50 -2.21 16 3 C -0.17 -3.20 9.37 -37.57 -0.35 -3.55 16 4 C -0.04 -0.76 5.01 -105.02 -0.53 -1.29 16 5 C -0.12 -2.03 9.79 -39.19 -0.38 -2.42 16 6 C -0.13 -2.05 10.03 -39.64 -0.40 -2.45 16 7 C -0.13 -2.12 10.04 -39.50 -0.40 -2.52 16 8 C -0.12 -2.27 10.03 -39.64 -0.40 -2.67 16 9 C -0.10 -2.11 7.40 -39.20 -0.29 -2.40 16 10 C 0.21 4.85 1.67 -29.03 -0.05 4.80 16 11 H 0.08 2.04 4.13 -51.93 -0.21 1.82 16 12 O -0.58 -13.54 10.99 -35.23 -0.39 -13.93 16 13 C -0.55 -14.76 7.43 -34.44 -0.26 -15.01 16 14 H 0.08 2.19 7.98 -52.49 -0.42 1.77 16 15 C 0.09 2.42 5.47 -17.82 -0.10 2.32 16 16 N -0.89 -26.11 13.96 55.43 0.77 -25.34 16 17 Si 0.90 23.09 26.18 -169.99 -4.45 18.64 16 18 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 19 H -0.30 -7.67 7.11 56.52 0.40 -7.27 16 20 H -0.27 -6.87 6.54 56.52 0.37 -6.50 16 21 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 22 H 0.05 0.74 8.05 -51.93 -0.42 0.33 16 23 H 0.06 1.01 6.59 -51.93 -0.34 0.66 16 24 H 0.11 1.74 8.03 -52.48 -0.42 1.32 16 25 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 26 H 0.11 1.39 8.06 -52.49 -0.42 0.97 16 27 H 0.11 1.47 8.06 -52.49 -0.42 1.05 16 28 H 0.12 2.00 8.06 -52.48 -0.42 1.58 16 29 H 0.16 3.61 5.35 -52.49 -0.28 3.33 16 30 H 0.36 7.22 7.50 45.56 0.34 7.56 16 31 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 259.25 15.07 3.91 3.91 Total: -1.00 -30.08 259.25 -6.48 -36.56 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: -3.04 Total: 9.03 kcal Atomic # 6 Polarization: -25.57 SS G_CDS: -3.29 Total: -28.86 kcal Atomic # 7 Polarization: -26.11 SS G_CDS: 0.77 Total: -25.34 kcal Atomic # 8 Polarization: -13.54 SS G_CDS: -0.39 Total: -13.93 kcal Atomic # 14 Polarization: 23.09 SS G_CDS: -4.45 Total: 18.64 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -30.08 -6.48 -36.56 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238024649.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.861 kcal (2) G-P(sol) polarization free energy of solvation -30.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds