Wall clock time and date at job start Mon Mar 30 2020 03:18:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.32570 * 120.00441 * 2 1 4 4 C 1.47810 * 120.00400 * 188.04669 * 3 2 1 5 5 C 1.39537 * 120.13817 * 221.67824 * 4 3 2 6 6 C 1.37976 * 119.85384 * 179.71402 * 5 4 3 7 7 C 1.38350 * 120.14058 * 0.53749 * 6 5 4 8 8 C 1.38347 * 120.28386 * 359.75816 * 7 6 5 9 9 C 1.37970 * 120.14403 * 359.96339 * 8 7 6 10 10 C 1.50698 * 120.00103 * 180.02562 * 2 1 3 11 11 H 1.09000 * 109.47772 * 188.19590 * 10 2 1 12 12 O 1.42901 * 109.46934 * 308.19418 * 10 2 1 13 13 C 1.50702 * 109.47360 * 68.19057 * 10 2 1 14 14 H 1.07996 * 119.99867 * 0.02562 * 13 10 2 15 15 C 1.37878 * 119.99847 * 180.02562 * 13 10 2 16 16 N 1.31523 * 119.99570 * 179.97438 * 15 13 10 17 17 Si 1.86796 * 120.00340 * 0.02562 * 15 13 10 18 18 H 1.48501 * 109.47139 * 89.99970 * 17 15 13 19 19 H 1.48500 * 109.47018 * 210.00174 * 17 15 13 20 20 H 1.48500 * 109.47001 * 330.00111 * 17 15 13 21 21 H 1.08997 * 109.47227 * 89.99838 * 1 2 3 22 22 H 1.09002 * 109.46662 * 329.99892 * 1 2 3 23 23 H 1.08998 * 109.47396 * 210.00115 * 1 2 3 24 24 H 1.08007 * 119.99604 * 8.04334 * 3 2 1 25 25 H 1.08002 * 120.07429 * 359.97438 * 5 4 3 26 26 H 1.07999 * 119.93297 * 180.27461 * 6 5 4 27 27 H 1.08001 * 119.85843 * 179.74121 * 7 6 5 28 28 H 1.08004 * 119.92451 * 179.97438 * 8 7 6 29 29 H 1.07999 * 120.07465 * 180.02562 * 9 8 7 30 30 H 0.96702 * 114.00320 * 59.99962 * 12 10 2 31 31 H 0.96996 * 119.99286 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1699 1.1480 0.0000 4 6 3.6371 1.1543 -0.1792 5 6 4.4336 2.0002 0.5935 6 6 5.8031 1.9970 0.4255 7 6 6.3858 1.1656 -0.5143 8 6 5.6010 0.3291 -1.2878 9 6 4.2310 0.3186 -1.1256 10 6 2.2605 -1.3051 -0.0006 11 1 3.3230 -1.1113 0.1460 12 8 1.7772 -2.1346 1.0579 13 6 2.0545 -2.0035 -1.3200 14 1 1.4399 -1.5477 -2.0821 15 6 2.6509 -3.2244 -1.5542 16 7 2.4707 -3.8341 -2.7055 17 14 3.7135 -4.0131 -0.2358 18 1 2.8687 -4.8718 0.6327 19 1 4.7655 -4.8414 -0.8780 20 1 4.3509 -2.9531 0.5859 21 1 -0.3633 0.0000 -1.0276 22 1 -0.3633 0.8900 0.5139 23 1 -0.3634 -0.8899 0.5138 24 1 1.6378 2.0788 0.1309 25 1 3.9796 2.6530 1.3244 26 1 6.4212 2.6480 1.0260 27 1 7.4579 1.1699 -0.6449 28 1 6.0620 -0.3173 -2.0201 29 1 3.6194 -0.3352 -1.7298 30 1 0.8364 -2.3483 0.9920 31 1 2.8906 -4.6928 -2.8704 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238024649.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:03 Heat of formation + Delta-G solvation = -35.115563 kcal Electronic energy + Delta-G solvation = -14572.014139 eV Core-core repulsion = 12203.594032 eV Total energy + Delta-G solvation = -2368.420107 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.33006 -38.44338 -35.29562 -34.49057 -31.86067 -31.66485 -29.39922 -27.44836 -24.70712 -23.14531 -22.58024 -19.77398 -19.19946 -17.74722 -16.89611 -16.60631 -16.19073 -15.58698 -15.26522 -14.94583 -14.33702 -14.17794 -14.04781 -13.72714 -13.34808 -13.33092 -13.01750 -12.94437 -12.61386 -11.98202 -11.84323 -11.73986 -11.17464 -10.88480 -10.59031 -10.23001 -9.70655 -8.93422 -8.38304 -6.49702 0.23740 0.59369 1.35054 1.36330 1.51116 1.55444 2.33806 2.95135 3.02726 3.93422 4.05942 4.13539 4.21377 4.22536 4.39328 4.48764 4.65041 4.79762 4.84477 4.90817 5.12088 5.18896 5.21936 5.32575 5.45133 5.54175 5.69304 5.73189 5.81017 6.07372 6.13767 6.27142 6.61012 7.10885 7.29618 8.75038 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.024198 B = 0.012843 C = 0.009950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.824149 B = 2179.607428 C = 2813.500629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.117 4.117 3 C -0.155 4.155 4 C -0.067 4.067 5 C -0.120 4.120 6 C -0.127 4.127 7 C -0.128 4.128 8 C -0.144 4.144 9 C -0.132 4.132 10 C 0.213 3.787 11 H 0.065 0.935 12 O -0.590 6.590 13 C -0.538 4.538 14 H 0.045 0.955 15 C 0.041 3.959 16 N -0.930 5.930 17 Si 0.956 3.044 18 H -0.274 1.274 19 H -0.300 1.300 20 H -0.271 1.271 21 H 0.063 0.937 22 H 0.084 0.916 23 H 0.065 0.935 24 H 0.141 0.859 25 H 0.144 0.856 26 H 0.154 0.846 27 H 0.146 0.854 28 H 0.120 0.880 29 H 0.118 0.882 30 H 0.372 0.628 31 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.133 10.944 7.019 13.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.117 4.117 3 C -0.173 4.173 4 C -0.067 4.067 5 C -0.138 4.138 6 C -0.144 4.144 7 C -0.146 4.146 8 C -0.162 4.162 9 C -0.150 4.150 10 C 0.156 3.844 11 H 0.083 0.917 12 O -0.398 6.398 13 C -0.576 4.576 14 H 0.063 0.937 15 C -0.160 4.160 16 N -0.569 5.569 17 Si 0.785 3.215 18 H -0.199 1.199 19 H -0.228 1.228 20 H -0.196 1.196 21 H 0.082 0.918 22 H 0.103 0.897 23 H 0.083 0.917 24 H 0.159 0.841 25 H 0.162 0.838 26 H 0.172 0.828 27 H 0.164 0.836 28 H 0.138 0.862 29 H 0.136 0.864 30 H 0.221 0.779 31 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 3.777 10.844 7.109 13.505 hybrid contribution -0.237 -0.978 -0.328 1.058 sum 3.540 9.866 6.781 12.484 Atomic orbital electron populations 1.20686 0.90309 1.03024 1.02026 1.22946 0.97471 0.95445 0.95848 1.21565 0.91927 0.97841 1.05956 1.19276 0.94138 0.96790 0.96463 1.21552 0.94193 0.98910 0.99137 1.21418 0.94762 0.99610 0.98641 1.21495 1.00748 0.96168 0.96158 1.21321 0.93754 1.00188 1.00919 1.21963 0.96174 0.98134 0.98730 1.19258 0.94272 0.85764 0.85058 0.91730 1.86388 1.30166 1.71658 1.51623 1.21558 1.31306 1.04302 1.00396 0.93717 1.25617 0.96431 0.97438 0.96513 1.70046 1.45197 1.16831 1.24804 0.85548 0.78422 0.78370 0.79165 1.19941 1.22794 1.19620 0.91828 0.89689 0.91650 0.84141 0.83816 0.82799 0.83599 0.86222 0.86427 0.77916 0.92295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.35 9.87 71.23 0.70 -2.65 16 2 C -0.12 -4.61 4.94 -17.60 -0.09 -4.70 16 3 C -0.16 -5.53 9.37 23.65 0.22 -5.31 16 4 C -0.07 -2.47 5.01 -20.12 -0.10 -2.58 16 5 C -0.12 -3.59 9.79 22.52 0.22 -3.37 16 6 C -0.13 -3.35 10.03 22.23 0.22 -3.13 16 7 C -0.13 -3.70 10.04 22.32 0.22 -3.47 16 8 C -0.14 -5.21 10.03 22.23 0.22 -4.98 16 9 C -0.13 -5.51 7.40 22.52 0.17 -5.34 16 10 C 0.21 10.14 1.67 29.10 0.05 10.19 16 11 H 0.07 3.32 4.13 -2.39 -0.01 3.31 16 12 O -0.59 -27.10 10.99 -148.98 -1.64 -28.74 16 13 C -0.54 -29.68 7.43 25.60 0.19 -29.49 16 14 H 0.04 2.70 7.98 -2.91 -0.02 2.68 16 15 C 0.04 2.35 5.47 84.65 0.46 2.81 16 16 N -0.93 -56.65 13.96 21.45 0.30 -56.35 16 17 Si 0.96 48.46 26.18 68.60 1.80 50.25 16 18 H -0.27 -13.58 7.11 99.48 0.71 -12.88 16 19 H -0.30 -14.86 7.11 99.48 0.71 -14.16 16 20 H -0.27 -13.87 6.54 99.48 0.65 -13.22 16 21 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 22 H 0.08 2.15 8.05 -2.39 -0.02 2.13 16 23 H 0.06 2.02 6.59 -2.39 -0.02 2.00 16 24 H 0.14 4.02 8.03 -2.91 -0.02 4.00 16 25 H 0.14 3.41 8.06 -2.91 -0.02 3.38 16 26 H 0.15 2.85 8.06 -2.91 -0.02 2.82 16 27 H 0.15 3.20 8.06 -2.91 -0.02 3.18 16 28 H 0.12 4.12 8.06 -2.91 -0.02 4.09 16 29 H 0.12 5.76 5.35 -2.91 -0.02 5.75 16 30 H 0.37 14.74 7.50 -74.06 -0.56 14.18 16 31 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 Total: -1.00 -66.32 259.25 3.47 -62.85 By element: Atomic # 1 Polarization: 23.49 SS G_CDS: 0.52 Total: 24.01 kcal Atomic # 6 Polarization: -54.52 SS G_CDS: 2.50 Total: -52.02 kcal Atomic # 7 Polarization: -56.65 SS G_CDS: 0.30 Total: -56.35 kcal Atomic # 8 Polarization: -27.10 SS G_CDS: -1.64 Total: -28.74 kcal Atomic # 14 Polarization: 48.46 SS G_CDS: 1.80 Total: 50.25 kcal Total: -66.32 3.47 -62.85 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238024649.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.735 kcal (2) G-P(sol) polarization free energy of solvation -66.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds