Wall clock time and date at job start Mon Mar 30 2020 03:09:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 110.82480 * 2 1 4 4 C 1.54677 * 110.92895 * 236.27241 * 2 1 3 5 5 O 1.43756 * 102.84869 * 216.43456 * 4 2 1 6 6 C 1.36181 * 109.30552 * 27.74091 * 5 4 2 7 7 C 1.38678 * 129.70185 * 160.83212 * 6 5 4 8 8 C 1.40397 * 120.03589 * 179.41277 * 7 6 5 9 9 C 1.41406 * 120.09385 * 180.17150 * 8 7 6 10 10 H 1.08001 * 119.99902 * 334.54023 * 9 8 7 11 11 C 1.39939 * 119.99912 * 154.54214 * 9 8 7 12 12 N 1.30826 * 119.99828 * 343.04877 * 11 9 8 13 13 Si 1.86796 * 119.99635 * 163.04901 * 11 9 8 14 14 H 1.48507 * 109.47093 * 90.00030 * 13 11 9 15 15 H 1.48503 * 109.47220 * 209.99853 * 13 11 9 16 16 H 1.48494 * 109.47323 * 330.00083 * 13 11 9 17 17 C 1.40772 * 119.81769 * 0.18961 * 8 7 6 18 18 C 1.37700 * 119.52040 * 0.34922 * 17 8 7 19 19 C 1.38211 * 120.30166 * 359.85623 * 18 17 8 20 20 H 1.09001 * 109.46864 * 296.30106 * 1 2 3 21 21 H 1.08999 * 109.47214 * 56.30496 * 1 2 3 22 22 H 1.08996 * 109.47131 * 176.31117 * 1 2 3 23 23 H 1.09006 * 109.47197 * 183.69124 * 3 2 1 24 24 H 1.08998 * 109.47477 * 303.69318 * 3 2 1 25 25 H 1.09003 * 109.46931 * 63.69202 * 3 2 1 26 26 H 1.08997 * 110.74051 * 334.77442 * 4 2 1 27 27 H 1.09005 * 110.74085 * 98.09905 * 4 2 1 28 28 H 1.08001 * 119.98329 * 359.69203 * 7 6 5 29 29 H 0.97001 * 119.99269 * 180.02562 * 12 11 9 30 30 H 1.07992 * 120.23696 * 180.36846 * 17 8 7 31 31 H 1.08000 * 119.84546 * 179.83058 * 18 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0740 1.4300 0.0000 4 6 2.0825 -0.8022 -1.2016 5 8 3.2500 -1.4366 -0.6527 6 6 3.0776 -1.6155 0.6863 7 6 3.7349 -2.4711 1.5575 8 6 3.3983 -2.4808 2.9205 9 6 4.0703 -3.3501 3.8106 10 1 4.5181 -4.2607 3.4410 11 6 4.1550 -3.0305 5.1704 12 7 3.9204 -1.8072 5.5706 13 14 4.6029 -4.3504 6.4139 14 1 6.0775 -4.3887 6.5858 15 1 3.9605 -4.0416 7.7167 16 1 4.1268 -5.6704 5.9279 17 6 2.3898 -1.6229 3.3986 18 6 1.7377 -0.7866 2.5202 19 6 2.0721 -0.7863 1.1791 20 1 -0.3633 0.4554 0.9213 21 1 -0.3633 0.5701 -0.8550 22 1 -0.3633 -1.0255 -0.0661 23 1 3.1617 1.4051 -0.0662 24 1 1.6703 1.9724 -0.8550 25 1 1.7774 1.9315 0.9213 26 1 1.3591 -1.5466 -1.5341 27 1 2.3546 -0.1345 -2.0191 28 1 4.5093 -3.1271 1.1882 29 1 3.9795 -1.5856 6.5131 30 1 2.1295 -1.6205 4.4467 31 1 0.9612 -0.1283 2.8808 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238230000.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:37 Heat of formation + Delta-G solvation = -43.536690 kcal Electronic energy + Delta-G solvation = -14503.144246 eV Core-core repulsion = 12134.358972 eV Total energy + Delta-G solvation = -2368.785274 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.80545 -38.18558 -35.91575 -35.04328 -31.33750 -30.32139 -28.14790 -27.27676 -26.99830 -23.23240 -22.58862 -20.30787 -19.33068 -17.36545 -17.03980 -16.85063 -16.68058 -15.70941 -14.93512 -14.56743 -14.34041 -14.12591 -13.78740 -13.70051 -13.36265 -13.04047 -12.83405 -12.64932 -12.42994 -12.22329 -11.94694 -11.83385 -11.65035 -11.41418 -11.03152 -10.87751 -9.41564 -8.73306 -8.67141 -6.40344 0.89594 1.04802 1.38482 1.48509 1.54599 2.20253 2.61447 2.76702 3.60455 3.65510 3.92206 4.14295 4.32598 4.41718 4.60294 4.67748 4.82929 4.88564 4.92514 5.01419 5.07969 5.10177 5.16273 5.23668 5.35994 5.42962 5.53383 5.82519 5.91231 6.06344 6.15561 6.43358 6.68987 6.89397 6.98540 8.30483 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.053968 B = 0.007796 C = 0.007263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 518.698055 B = 3590.586926 C = 3854.180028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.040 4.040 3 C -0.125 4.125 4 C 0.054 3.946 5 O -0.337 6.337 6 C 0.107 3.893 7 C -0.268 4.268 8 C 0.109 3.891 9 C -0.499 4.499 10 H 0.075 0.925 11 C 0.037 3.963 12 N -0.821 5.821 13 Si 0.986 3.014 14 H -0.262 1.262 15 H -0.262 1.262 16 H -0.259 1.259 17 C -0.207 4.207 18 C -0.057 4.057 19 C -0.275 4.275 20 H 0.056 0.944 21 H 0.084 0.916 22 H 0.049 0.951 23 H 0.035 0.965 24 H 0.087 0.913 25 H 0.053 0.947 26 H 0.078 0.922 27 H 0.124 0.876 28 H 0.088 0.912 29 H 0.291 0.709 30 H 0.110 0.890 31 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.653 3.549 -5.937 8.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.040 4.040 3 C -0.182 4.182 4 C -0.020 4.020 5 O -0.253 6.253 6 C 0.063 3.937 7 C -0.289 4.289 8 C 0.107 3.893 9 C -0.528 4.528 10 H 0.093 0.907 11 C -0.178 4.178 12 N -0.446 5.446 13 Si 0.806 3.194 14 H -0.187 1.187 15 H -0.186 1.186 16 H -0.183 1.183 17 C -0.227 4.227 18 C -0.075 4.075 19 C -0.276 4.276 20 H 0.075 0.925 21 H 0.103 0.897 22 H 0.068 0.932 23 H 0.054 0.946 24 H 0.106 0.894 25 H 0.072 0.928 26 H 0.096 0.904 27 H 0.142 0.858 28 H 0.107 0.893 29 H 0.101 0.899 30 H 0.128 0.872 31 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -5.473 3.659 -5.885 8.831 hybrid contribution 0.459 -0.545 0.757 1.040 sum -5.014 3.114 -5.128 7.819 Atomic orbital electron populations 1.21676 0.91721 1.01903 1.02772 1.20623 0.97308 0.95224 0.90825 1.21726 0.99910 0.93979 1.02624 1.24129 0.85727 0.95770 0.96422 1.86653 1.41053 1.78260 1.19301 1.19463 0.96184 0.95162 0.82901 1.20255 1.07921 1.06812 0.93889 1.17567 0.90078 0.91247 0.90426 1.19804 1.32856 1.06865 0.93321 0.90697 1.26781 0.92344 0.97914 1.00788 1.69873 1.35930 1.19998 1.18801 0.85153 0.79280 0.78353 0.76609 1.18653 1.18612 1.18301 1.21216 0.99676 1.02653 0.99109 1.20070 0.98351 0.97596 0.91482 1.20448 1.05980 1.05905 0.95306 0.92506 0.89738 0.93216 0.94559 0.89434 0.92792 0.90367 0.85810 0.89340 0.89872 0.87222 0.86909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.22 8.55 71.98 0.62 -2.60 16 2 C -0.04 -1.29 1.03 -52.02 -0.05 -1.35 16 3 C -0.13 -3.61 8.61 71.98 0.62 -2.99 16 4 C 0.05 1.69 7.09 72.55 0.51 2.21 16 5 O -0.34 -14.62 11.10 -95.62 -1.06 -15.69 16 6 C 0.11 5.28 7.02 22.64 0.16 5.44 16 7 C -0.27 -14.70 9.80 22.90 0.22 -14.47 16 8 C 0.11 6.22 5.56 -21.35 -0.12 6.10 16 9 C -0.50 -27.94 9.04 23.46 0.21 -27.73 16 10 H 0.07 4.07 7.90 -2.91 -0.02 4.04 16 11 C 0.04 1.90 5.15 85.25 0.44 2.34 16 12 N -0.82 -43.24 10.95 21.82 0.24 -43.00 16 13 Si 0.99 38.48 29.59 68.60 2.03 40.51 16 14 H -0.26 -9.85 7.11 99.48 0.71 -9.14 16 15 H -0.26 -9.56 7.11 99.48 0.71 -8.85 16 16 H -0.26 -9.98 7.11 99.48 0.71 -9.27 16 17 C -0.21 -11.18 8.70 22.76 0.20 -10.98 16 18 C -0.06 -2.67 9.89 22.14 0.22 -2.45 16 19 C -0.27 -12.21 5.07 -19.27 -0.10 -12.31 16 20 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 21 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 22 H 0.05 1.34 8.07 -2.39 -0.02 1.33 16 23 H 0.04 1.17 8.14 -2.38 -0.02 1.15 16 24 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 25 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 26 H 0.08 2.22 7.86 -2.39 -0.02 2.20 16 27 H 0.12 2.98 7.92 -2.38 -0.02 2.96 16 28 H 0.09 4.77 8.06 -2.91 -0.02 4.74 16 29 H 0.29 13.69 8.30 -92.71 -0.77 12.92 16 30 H 0.11 6.08 6.18 -2.91 -0.02 6.06 16 31 H 0.11 4.64 8.06 -2.91 -0.02 4.62 16 Total: -1.00 -63.03 261.53 5.25 -57.78 By element: Atomic # 1 Polarization: 18.08 SS G_CDS: 1.11 Total: 19.19 kcal Atomic # 6 Polarization: -61.73 SS G_CDS: 2.93 Total: -58.80 kcal Atomic # 7 Polarization: -43.24 SS G_CDS: 0.24 Total: -43.00 kcal Atomic # 8 Polarization: -14.62 SS G_CDS: -1.06 Total: -15.69 kcal Atomic # 14 Polarization: 38.48 SS G_CDS: 2.03 Total: 40.51 kcal Total: -63.03 5.25 -57.78 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238230000.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.243 kcal (2) G-P(sol) polarization free energy of solvation -63.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds