Wall clock time and date at job start Mon Mar 30 2020 03:08:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36457 * 119.90857 * 2 1 4 4 C 1.40817 * 119.80850 * 179.97438 * 3 2 1 5 5 C 1.41210 * 120.17563 * 180.02562 * 4 3 2 6 6 H 1.08001 * 120.00379 * 332.16304 * 5 4 3 7 7 C 1.39890 * 120.00203 * 152.16604 * 5 4 3 8 8 N 1.30879 * 119.99588 * 346.16717 * 7 5 4 9 9 Si 1.86801 * 120.00157 * 166.16193 * 7 5 4 10 10 H 1.48497 * 109.46964 * 60.00479 * 9 7 5 11 11 H 1.48497 * 109.46874 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.47258 * 300.00179 * 9 7 5 13 13 C 1.40843 * 119.64466 * 0.02562 * 4 3 2 14 14 C 1.36420 * 119.81220 * 0.02562 * 13 4 3 15 15 C 1.39296 * 119.90251 * 180.02562 * 2 1 3 16 16 O 1.35672 * 119.81641 * 0.02562 * 15 2 1 17 17 C 1.42906 * 116.99355 * 186.07658 * 16 15 2 18 18 C 1.53000 * 117.49763 * 225.63322 * 17 16 15 19 19 C 1.52997 * 117.49338 * 156.97491 * 17 16 15 20 20 H 1.09001 * 109.46789 * 89.99476 * 1 2 3 21 21 H 1.09000 * 109.47326 * 209.99727 * 1 2 3 22 22 H 1.09004 * 109.46778 * 330.00065 * 1 2 3 23 23 H 1.07992 * 120.09246 * 359.97438 * 3 2 1 24 24 H 0.97011 * 119.99804 * 179.97438 * 8 7 5 25 25 H 1.08002 * 120.10011 * 179.72281 * 13 4 3 26 26 H 1.08001 * 119.91079 * 179.97438 * 14 13 4 27 27 H 1.08999 * 115.54958 * 11.30959 * 17 16 15 28 28 H 1.08997 * 117.49674 * 0.02562 * 18 17 16 29 29 H 1.09000 * 117.49991 * 145.02348 * 18 17 16 30 30 H 1.09000 * 117.50159 * 214.97589 * 19 17 16 31 31 H 1.09000 * 117.50326 * 359.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1874 1.1828 0.0000 4 6 3.5956 1.1804 0.0005 5 6 4.3075 2.3999 0.0011 6 1 3.8657 3.2834 -0.4356 7 6 5.5851 2.4637 0.5673 8 7 6.0130 1.4888 1.3284 9 14 6.6805 3.9404 0.2368 10 1 6.0103 5.1727 0.7240 11 1 7.9735 3.7661 0.9460 12 1 6.9287 4.0559 -1.2227 13 6 4.2901 -0.0449 0.0005 14 6 3.5948 -1.2186 -0.0005 15 6 2.2015 -1.2075 -0.0005 16 8 1.5173 -2.3791 -0.0016 17 6 2.2837 -3.5778 0.1327 18 6 1.9553 -4.7358 -0.8119 19 6 1.5657 -4.8191 0.6661 20 1 -0.3633 0.0001 -1.0277 21 1 -0.3634 -0.8900 0.5138 22 1 -0.3633 0.8900 0.5138 23 1 1.6475 2.1181 -0.0004 24 1 6.8992 1.5329 1.7207 25 1 5.3701 -0.0554 -0.0036 26 1 4.1257 -2.1591 -0.0009 27 1 3.3272 -3.4395 0.4156 28 1 1.1551 -4.5830 -1.5360 29 1 2.7827 -5.3595 -1.1502 30 1 2.1369 -5.4978 1.2995 31 1 0.5090 -4.7214 0.9149 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238470347.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:06 Heat of formation + Delta-G solvation = 4.656313 kcal Electronic energy + Delta-G solvation = -14109.379690 eV Core-core repulsion = 11742.684221 eV Total energy + Delta-G solvation = -2366.695469 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.07546 -37.03900 -34.77444 -33.31912 -31.31006 -29.25555 -25.78941 -24.81632 -22.71158 -22.23961 -20.32370 -19.76412 -17.34475 -16.91515 -15.46569 -14.80247 -14.49316 -14.03967 -13.88364 -13.26782 -12.81145 -12.41139 -12.12362 -11.80150 -11.56000 -11.46202 -11.40161 -11.11136 -10.88040 -10.76121 -10.26956 -10.20875 -9.75117 -9.47099 -9.30417 -8.90859 -7.50523 -6.87880 -6.68213 -4.25107 2.78037 2.93541 3.08902 3.11881 3.20476 3.90617 3.97548 4.09524 4.64220 5.04256 5.17571 5.48926 5.62791 5.73591 5.74389 5.97373 6.06240 6.10434 6.25445 6.31307 6.41889 6.60797 6.79003 6.91729 7.10383 7.31400 7.44354 7.62964 7.92356 8.02547 8.17376 8.45893 8.66762 8.92245 9.00379 10.27135 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.043564 B = 0.007266 C = 0.006434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.573865 B = 3852.635068 C = 4351.018635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.087 4.087 3 C -0.192 4.192 4 C 0.090 3.910 5 C -0.464 4.464 6 H 0.076 0.924 7 C 0.074 3.926 8 N -0.806 5.806 9 Si 0.909 3.091 10 H -0.266 1.266 11 H -0.280 1.280 12 H -0.265 1.265 13 C -0.129 4.129 14 C -0.174 4.174 15 C -0.004 4.004 16 O -0.293 6.293 17 C 0.022 3.978 18 C -0.195 4.195 19 C -0.183 4.183 20 H 0.051 0.949 21 H 0.055 0.945 22 H 0.051 0.949 23 H 0.100 0.900 24 H 0.279 0.721 25 H 0.121 0.879 26 H 0.098 0.902 27 H 0.119 0.881 28 H 0.097 0.903 29 H 0.096 0.904 30 H 0.098 0.902 31 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.271 -6.205 -1.439 7.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.087 4.087 3 C -0.212 4.212 4 C 0.087 3.913 5 C -0.495 4.495 6 H 0.094 0.906 7 C -0.142 4.142 8 N -0.433 5.433 9 Si 0.734 3.266 10 H -0.191 1.191 11 H -0.205 1.205 12 H -0.190 1.190 13 C -0.148 4.148 14 C -0.193 4.193 15 C -0.047 4.047 16 O -0.208 6.208 17 C -0.035 4.035 18 C -0.233 4.233 19 C -0.220 4.220 20 H 0.070 0.930 21 H 0.074 0.926 22 H 0.070 0.930 23 H 0.118 0.882 24 H 0.090 0.910 25 H 0.139 0.861 26 H 0.116 0.884 27 H 0.136 0.864 28 H 0.116 0.884 29 H 0.114 0.886 30 H 0.116 0.884 31 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -3.274 -6.275 -1.304 7.197 hybrid contribution 0.866 0.530 -0.002 1.015 sum -2.408 -5.745 -1.306 6.364 Atomic orbital electron populations 1.20492 0.93155 1.00962 1.00555 1.18496 0.94193 0.90706 1.05331 1.20535 0.94249 0.94847 1.11554 1.17584 0.90738 0.93323 0.89623 1.19416 0.99549 0.96310 1.34212 0.90613 1.25854 0.98113 0.97397 0.92858 1.69815 1.18584 1.31951 1.22941 0.86357 0.78939 0.81715 0.79593 1.19103 1.20460 1.18972 1.20933 0.99804 0.90939 1.03167 1.20605 0.92494 0.98217 1.07946 1.18363 0.90192 0.83628 1.12480 1.85771 1.34261 1.11627 1.89121 1.22773 0.96230 0.81428 1.03104 1.23390 1.03990 1.02395 0.93484 1.23277 1.02019 1.00111 0.96641 0.92991 0.92631 0.92964 0.88170 0.91030 0.86150 0.88388 0.86373 0.88447 0.88560 0.88364 0.88451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.82 9.78 36.01 0.35 -1.47 16 2 C -0.09 -2.03 5.86 -104.87 -0.61 -2.64 16 3 C -0.19 -4.79 9.38 -39.25 -0.37 -5.16 16 4 C 0.09 2.41 5.55 -106.81 -0.59 1.82 16 5 C -0.46 -12.42 9.04 -37.84 -0.34 -12.76 16 6 H 0.08 1.94 7.88 -52.49 -0.41 1.53 16 7 C 0.07 1.87 5.19 -17.34 -0.09 1.78 16 8 N -0.81 -21.07 10.95 55.54 0.61 -20.46 16 9 Si 0.91 18.88 29.58 -169.99 -5.03 13.86 16 10 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 11 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 12 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 13 C -0.13 -3.38 8.60 -39.25 -0.34 -3.72 16 14 C -0.17 -4.15 9.04 -39.83 -0.36 -4.51 16 15 C 0.00 -0.08 6.68 -38.78 -0.26 -0.34 16 16 O -0.29 -6.16 9.41 -18.72 -0.18 -6.33 16 17 C 0.02 0.38 6.08 -26.73 -0.16 0.22 16 18 C -0.20 -2.69 10.48 -26.69 -0.28 -2.97 16 19 C -0.18 -2.49 10.48 -26.69 -0.28 -2.77 16 20 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 21 H 0.05 1.03 7.52 -51.93 -0.39 0.64 16 22 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 23 H 0.10 2.33 8.06 -52.49 -0.42 1.91 16 24 H 0.28 6.67 8.30 -40.81 -0.34 6.33 16 25 H 0.12 3.23 6.27 -52.49 -0.33 2.90 16 26 H 0.10 2.07 5.66 -52.49 -0.30 1.77 16 27 H 0.12 2.02 5.53 -51.93 -0.29 1.73 16 28 H 0.10 1.35 8.14 -51.93 -0.42 0.92 16 29 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 LS Contribution 265.42 15.07 4.00 4.00 Total: -1.00 -28.07 265.42 -7.74 -35.81 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: -3.81 Total: 5.65 kcal Atomic # 6 Polarization: -29.18 SS G_CDS: -3.33 Total: -32.52 kcal Atomic # 7 Polarization: -21.07 SS G_CDS: 0.61 Total: -20.46 kcal Atomic # 8 Polarization: -6.16 SS G_CDS: -0.18 Total: -6.33 kcal Atomic # 14 Polarization: 18.88 SS G_CDS: -5.03 Total: 13.86 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -28.07 -7.74 -35.81 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238470347.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.467 kcal (2) G-P(sol) polarization free energy of solvation -28.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.810 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds