Wall clock time and date at job start Mon Mar 30 2020 03:08:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36457 * 119.90857 * 2 1 4 4 C 1.40817 * 119.80850 * 179.97438 * 3 2 1 5 5 C 1.41210 * 120.17563 * 180.02562 * 4 3 2 6 6 H 1.08001 * 120.00379 * 332.16304 * 5 4 3 7 7 C 1.39890 * 120.00203 * 152.16604 * 5 4 3 8 8 N 1.30879 * 119.99588 * 346.16717 * 7 5 4 9 9 Si 1.86801 * 120.00157 * 166.16193 * 7 5 4 10 10 H 1.48497 * 109.46964 * 60.00479 * 9 7 5 11 11 H 1.48497 * 109.46874 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.47258 * 300.00179 * 9 7 5 13 13 C 1.40843 * 119.64466 * 0.02562 * 4 3 2 14 14 C 1.36420 * 119.81220 * 0.02562 * 13 4 3 15 15 C 1.39296 * 119.90251 * 180.02562 * 2 1 3 16 16 O 1.35672 * 119.81641 * 0.02562 * 15 2 1 17 17 C 1.42906 * 116.99355 * 186.07658 * 16 15 2 18 18 C 1.53000 * 117.49763 * 225.63322 * 17 16 15 19 19 C 1.52997 * 117.49338 * 156.97491 * 17 16 15 20 20 H 1.09001 * 109.46789 * 89.99476 * 1 2 3 21 21 H 1.09000 * 109.47326 * 209.99727 * 1 2 3 22 22 H 1.09004 * 109.46778 * 330.00065 * 1 2 3 23 23 H 1.07992 * 120.09246 * 359.97438 * 3 2 1 24 24 H 0.97011 * 119.99804 * 179.97438 * 8 7 5 25 25 H 1.08002 * 120.10011 * 179.72281 * 13 4 3 26 26 H 1.08001 * 119.91079 * 179.97438 * 14 13 4 27 27 H 1.08999 * 115.54958 * 11.30959 * 17 16 15 28 28 H 1.08997 * 117.49674 * 0.02562 * 18 17 16 29 29 H 1.09000 * 117.49991 * 145.02348 * 18 17 16 30 30 H 1.09000 * 117.50159 * 214.97589 * 19 17 16 31 31 H 1.09000 * 117.50326 * 359.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1874 1.1828 0.0000 4 6 3.5956 1.1804 0.0005 5 6 4.3075 2.3999 0.0011 6 1 3.8657 3.2834 -0.4356 7 6 5.5851 2.4637 0.5673 8 7 6.0130 1.4888 1.3284 9 14 6.6805 3.9404 0.2368 10 1 6.0103 5.1727 0.7240 11 1 7.9735 3.7661 0.9460 12 1 6.9287 4.0559 -1.2227 13 6 4.2901 -0.0449 0.0005 14 6 3.5948 -1.2186 -0.0005 15 6 2.2015 -1.2075 -0.0005 16 8 1.5173 -2.3791 -0.0016 17 6 2.2837 -3.5778 0.1327 18 6 1.9553 -4.7358 -0.8119 19 6 1.5657 -4.8191 0.6661 20 1 -0.3633 0.0001 -1.0277 21 1 -0.3634 -0.8900 0.5138 22 1 -0.3633 0.8900 0.5138 23 1 1.6475 2.1181 -0.0004 24 1 6.8992 1.5329 1.7207 25 1 5.3701 -0.0554 -0.0036 26 1 4.1257 -2.1591 -0.0009 27 1 3.3272 -3.4395 0.4156 28 1 1.1551 -4.5830 -1.5360 29 1 2.7827 -5.3595 -1.1502 30 1 2.1369 -5.4978 1.2995 31 1 0.5090 -4.7214 0.9149 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238470347.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:05 Heat of formation + Delta-G solvation = -9.764788 kcal Electronic energy + Delta-G solvation = -14110.005035 eV Core-core repulsion = 11742.684221 eV Total energy + Delta-G solvation = -2367.320815 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.73353 -38.66643 -36.30420 -35.08079 -33.10588 -31.15204 -27.56047 -26.65693 -24.28790 -23.31371 -22.16577 -21.39718 -18.95365 -18.84045 -17.19859 -16.44357 -15.91744 -15.63659 -15.55244 -14.85839 -14.54335 -13.93194 -13.85718 -13.59523 -13.26895 -13.07242 -12.81087 -12.61931 -12.42133 -12.37907 -12.01678 -11.59372 -11.49415 -11.10481 -11.08504 -10.56416 -9.40197 -8.74725 -8.56488 -6.23771 0.93459 1.02176 1.39445 1.50541 1.53165 2.23530 2.46371 2.71628 2.94324 3.66934 3.78346 4.07733 4.16842 4.26172 4.36893 4.54040 4.67741 4.72040 4.90134 4.92611 4.95794 5.08931 5.12489 5.21670 5.21992 5.39786 5.56181 5.79677 5.98629 6.09214 6.26275 6.57506 6.81213 6.96349 7.10842 8.40353 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.043564 B = 0.007266 C = 0.006434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.573865 B = 3852.635068 C = 4351.018635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C -0.100 4.100 3 C -0.203 4.203 4 C 0.055 3.945 5 C -0.501 4.501 6 H 0.075 0.925 7 C 0.032 3.968 8 N -0.838 5.838 9 Si 0.984 3.016 10 H -0.260 1.260 11 H -0.269 1.269 12 H -0.261 1.261 13 C -0.152 4.152 14 C -0.179 4.179 15 C 0.002 3.998 16 O -0.301 6.301 17 C -0.028 4.028 18 C -0.177 4.177 19 C -0.160 4.160 20 H 0.067 0.933 21 H 0.061 0.939 22 H 0.067 0.933 23 H 0.109 0.891 24 H 0.286 0.714 25 H 0.105 0.895 26 H 0.120 0.880 27 H 0.113 0.887 28 H 0.097 0.903 29 H 0.120 0.880 30 H 0.124 0.876 31 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.824 -7.139 -1.595 8.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.100 4.100 3 C -0.223 4.223 4 C 0.053 3.947 5 C -0.531 4.531 6 H 0.093 0.907 7 C -0.181 4.181 8 N -0.466 5.466 9 Si 0.805 3.195 10 H -0.184 1.184 11 H -0.194 1.194 12 H -0.186 1.186 13 C -0.172 4.172 14 C -0.197 4.197 15 C -0.042 4.042 16 O -0.216 6.216 17 C -0.084 4.084 18 C -0.214 4.214 19 C -0.197 4.197 20 H 0.086 0.914 21 H 0.080 0.920 22 H 0.086 0.914 23 H 0.127 0.873 24 H 0.096 0.904 25 H 0.123 0.877 26 H 0.137 0.863 27 H 0.130 0.870 28 H 0.116 0.884 29 H 0.138 0.862 30 H 0.142 0.858 31 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -3.846 -7.236 -1.461 8.324 hybrid contribution 0.933 0.633 0.051 1.128 sum -2.913 -6.604 -1.410 7.354 Atomic orbital electron populations 1.20496 0.90052 1.02041 1.01901 1.18975 0.96639 0.90231 1.04173 1.20735 0.93794 0.96047 1.11701 1.17961 0.91992 0.93897 0.90823 1.19675 1.01136 0.96457 1.35861 0.90670 1.26720 0.98941 1.00490 0.91960 1.69883 1.19236 1.33888 1.23571 0.85231 0.77012 0.77801 0.79492 1.18437 1.19358 1.18571 1.20880 0.99227 0.91847 1.05242 1.20839 0.93192 0.98407 1.07287 1.18528 0.90083 0.84953 1.10636 1.85736 1.34824 1.11885 1.89157 1.23154 0.96484 0.81093 1.07696 1.23500 1.04512 0.99710 0.93683 1.23420 1.02160 0.97175 0.96950 0.91382 0.91999 0.91409 0.87312 0.90406 0.87725 0.86262 0.86959 0.88406 0.86166 0.85757 0.88109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.23 9.78 71.24 0.70 -2.54 16 2 C -0.10 -4.63 5.86 -20.02 -0.12 -4.74 16 3 C -0.20 -10.30 9.38 22.48 0.21 -10.09 16 4 C 0.06 3.09 5.55 -21.28 -0.12 2.97 16 5 C -0.50 -27.68 9.04 23.40 0.21 -27.47 16 6 H 0.08 3.98 7.88 -2.91 -0.02 3.96 16 7 C 0.03 1.64 5.19 85.23 0.44 2.08 16 8 N -0.84 -45.00 10.95 21.82 0.24 -44.76 16 9 Si 0.98 39.08 29.58 68.60 2.03 41.11 16 10 H -0.26 -9.98 7.11 99.48 0.71 -9.28 16 11 H -0.27 -10.12 7.11 99.48 0.71 -9.41 16 12 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 13 C -0.15 -8.29 8.60 22.48 0.19 -8.09 16 14 C -0.18 -8.66 9.04 22.11 0.20 -8.46 16 15 C 0.00 0.08 6.68 22.79 0.15 0.23 16 16 O -0.30 -12.28 9.41 -89.90 -0.85 -13.13 16 17 C -0.03 -0.89 6.08 30.59 0.19 -0.71 16 18 C -0.18 -4.34 10.48 30.62 0.32 -4.01 16 19 C -0.16 -3.82 10.48 30.62 0.32 -3.50 16 20 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 21 H 0.06 2.17 7.52 -2.39 -0.02 2.15 16 22 H 0.07 2.25 8.08 -2.39 -0.02 2.23 16 23 H 0.11 5.14 8.06 -2.91 -0.02 5.12 16 24 H 0.29 13.91 8.30 -92.70 -0.77 13.14 16 25 H 0.10 5.90 6.27 -2.91 -0.02 5.88 16 26 H 0.12 5.09 5.66 -2.91 -0.02 5.07 16 27 H 0.11 3.73 5.53 -2.39 -0.01 3.71 16 28 H 0.10 2.42 8.14 -2.39 -0.02 2.40 16 29 H 0.12 2.37 8.14 -2.39 -0.02 2.35 16 30 H 0.12 2.33 8.14 -2.39 -0.02 2.31 16 31 H 0.10 2.37 8.14 -2.39 -0.02 2.35 16 Total: -1.00 -61.56 265.42 5.25 -56.32 By element: Atomic # 1 Polarization: 23.68 SS G_CDS: 1.12 Total: 24.81 kcal Atomic # 6 Polarization: -67.04 SS G_CDS: 2.70 Total: -64.34 kcal Atomic # 7 Polarization: -45.00 SS G_CDS: 0.24 Total: -44.76 kcal Atomic # 8 Polarization: -12.28 SS G_CDS: -0.85 Total: -13.13 kcal Atomic # 14 Polarization: 39.08 SS G_CDS: 2.03 Total: 41.11 kcal Total: -61.56 5.25 -56.32 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238470347.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.553 kcal (2) G-P(sol) polarization free energy of solvation -61.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds