Wall clock time and date at job start Mon Mar 30 2020 03:02:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37909 * 119.91597 * 2 1 4 4 C 1.39827 * 119.82555 * 179.74884 * 3 2 1 5 5 C 1.47166 * 120.17490 * 180.25245 * 4 3 2 6 6 O 1.21260 * 119.99553 * 0.25399 * 5 4 3 7 7 C 1.39876 * 119.65829 * 0.50792 * 4 3 2 8 8 C 1.50694 * 120.09004 * 179.74742 * 7 4 3 9 9 C 1.50705 * 109.46970 * 85.01782 * 8 7 4 10 10 H 1.07993 * 120.00202 * 0.02562 * 9 8 7 11 11 C 1.37879 * 119.99744 * 180.02562 * 9 8 7 12 12 N 1.31513 * 119.99933 * 180.02562 * 11 9 8 13 13 Si 1.86800 * 120.00220 * 359.97438 * 11 9 8 14 14 H 1.48499 * 109.46821 * 90.00262 * 13 11 9 15 15 H 1.48497 * 109.47393 * 209.99870 * 13 11 9 16 16 H 1.48497 * 109.47340 * 330.00551 * 13 11 9 17 17 C 1.37868 * 119.82272 * 359.76599 * 7 4 3 18 18 C 1.38383 * 119.91056 * 180.27983 * 2 1 3 19 19 C 1.50698 * 119.83100 * 359.97438 * 18 2 1 20 20 H 1.09002 * 109.47152 * 269.72192 * 1 2 3 21 21 H 1.09001 * 109.46980 * 149.72292 * 1 2 3 22 22 H 1.09004 * 109.47113 * 29.72273 * 1 2 3 23 23 H 1.08002 * 120.08552 * 0.02795 * 3 2 1 24 24 H 1.07991 * 120.00388 * 180.25252 * 5 4 3 25 25 H 1.08999 * 109.47162 * 205.01719 * 8 7 4 26 26 H 1.08996 * 109.47374 * 325.02010 * 8 7 4 27 27 H 0.96997 * 120.00625 * 179.97438 * 12 11 9 28 28 H 1.08000 * 119.91526 * 180.02562 * 17 7 4 29 29 H 1.08998 * 109.46994 * 90.00075 * 19 18 2 30 30 H 1.08996 * 109.47271 * 210.00561 * 19 18 2 31 31 H 1.09004 * 109.46776 * 330.00119 * 19 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1948 1.1953 0.0000 4 6 3.5931 1.1931 0.0053 5 6 4.3348 2.4642 0.0110 6 8 3.7333 3.5171 0.0157 7 6 4.2833 -0.0234 -0.0002 8 6 5.7902 -0.0371 -0.0003 9 6 6.2937 0.0753 1.4157 10 1 5.5926 0.1489 2.2339 11 6 7.6494 0.0843 1.6667 12 7 8.0888 0.1819 2.9024 13 14 8.8621 -0.0437 0.2516 14 1 9.1956 1.3177 -0.2390 15 1 10.0996 -0.7181 0.7196 16 1 8.2552 -0.8321 -0.8507 17 6 3.5814 -1.2100 -0.0059 18 6 2.1971 -1.1995 -0.0059 19 6 1.4377 -2.5012 -0.0116 20 1 -0.3633 -0.0050 1.0277 21 1 -0.3633 -0.8875 -0.5181 22 1 -0.3633 0.8925 -0.5095 23 1 1.6548 2.1307 0.0005 24 1 5.4147 2.4593 0.0109 25 1 6.1451 -0.9697 -0.4391 26 1 6.1612 0.8042 -0.5856 27 1 9.0425 0.1878 3.0791 28 1 4.1128 -2.1502 -0.0097 29 1 1.2542 -2.8102 -1.0407 30 1 2.0235 -3.2658 0.4985 31 1 0.4861 -2.3688 0.5032 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238474809.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:11 Heat of formation + Delta-G solvation = -48.513508 kcal Electronic energy + Delta-G solvation = -14119.506990 eV Core-core repulsion = 11750.505904 eV Total energy + Delta-G solvation = -2369.001085 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.03139 -39.33443 -36.07694 -34.30682 -33.15241 -30.97189 -28.78934 -27.37003 -24.67464 -23.90890 -22.43771 -20.36680 -18.97895 -17.73051 -17.12379 -16.38148 -15.73069 -15.67641 -15.38697 -14.81214 -14.73784 -14.63019 -13.91292 -13.86435 -13.55649 -13.18273 -13.11831 -12.79869 -12.51118 -12.31936 -12.15615 -11.81910 -11.67102 -11.51253 -10.81428 -10.62147 -9.68560 -9.26282 -8.29307 -6.36006 -0.27251 0.51397 1.39794 1.41196 1.49278 1.52253 2.35986 2.85991 3.05304 3.43932 3.88345 3.94946 4.03650 4.29241 4.35622 4.43032 4.71133 4.81351 4.86137 4.88321 4.89966 4.95636 5.04119 5.11281 5.26853 5.33433 5.47720 5.54194 5.65096 5.74170 6.08003 6.25206 6.44064 6.71021 7.28002 8.86881 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.030167 B = 0.008963 C = 0.007608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.939729 B = 3123.219666 C = 3679.222430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.126 4.126 3 C -0.067 4.067 4 C -0.220 4.220 5 C 0.394 3.606 6 O -0.507 6.507 7 C -0.004 4.004 8 C 0.011 3.989 9 C -0.519 4.519 10 H 0.028 0.972 11 C 0.013 3.987 12 N -0.947 5.947 13 Si 0.943 3.057 14 H -0.264 1.264 15 H -0.285 1.285 16 H -0.239 1.239 17 C -0.150 4.150 18 C -0.050 4.050 19 C -0.115 4.115 20 H 0.076 0.924 21 H 0.088 0.912 22 H 0.071 0.929 23 H 0.129 0.871 24 H 0.112 0.888 25 H 0.043 0.957 26 H 0.039 0.961 27 H 0.268 0.732 28 H 0.132 0.868 29 H 0.092 0.908 30 H 0.071 0.929 31 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.238 -4.707 -9.281 16.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.126 4.126 3 C -0.085 4.085 4 C -0.221 4.221 5 C 0.258 3.742 6 O -0.384 6.384 7 C -0.004 4.004 8 C -0.026 4.026 9 C -0.557 4.557 10 H 0.046 0.954 11 C -0.185 4.185 12 N -0.587 5.587 13 Si 0.766 3.234 14 H -0.189 1.189 15 H -0.211 1.211 16 H -0.162 1.162 17 C -0.168 4.168 18 C -0.050 4.050 19 C -0.171 4.171 20 H 0.094 0.906 21 H 0.107 0.893 22 H 0.090 0.910 23 H 0.147 0.853 24 H 0.129 0.871 25 H 0.061 0.939 26 H 0.057 0.943 27 H 0.077 0.923 28 H 0.150 0.850 29 H 0.110 0.890 30 H 0.090 0.910 31 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -12.408 -4.155 -9.174 15.981 hybrid contribution 1.219 0.142 0.194 1.242 sum -11.190 -4.013 -8.980 14.898 Atomic orbital electron populations 1.20819 0.88329 1.03987 1.03085 1.20022 0.97967 0.91609 1.03035 1.21368 0.92506 0.98852 0.95804 1.20689 0.95216 0.95284 1.10924 1.24349 0.95915 0.86471 0.67515 1.90387 1.74566 1.35215 1.38246 1.20406 0.96536 0.92489 0.90994 1.18810 0.88919 0.98684 0.96142 1.21019 0.91980 1.50931 0.91730 0.95384 1.25934 1.00397 0.93851 0.98306 1.70048 1.15244 1.51658 1.21701 0.85756 0.78037 0.79700 0.79896 1.18879 1.21123 1.16240 1.21129 0.94192 0.97770 1.03667 1.20417 0.93159 0.96612 0.94833 1.20959 1.00242 0.92113 1.03812 0.90578 0.89280 0.91019 0.85273 0.87129 0.93860 0.94276 0.92308 0.84996 0.88994 0.90974 0.89452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.04 9.18 71.24 0.65 -1.38 16 2 C -0.13 -3.59 5.87 -19.91 -0.12 -3.71 16 3 C -0.07 -2.29 9.24 22.58 0.21 -2.08 16 4 C -0.22 -8.68 5.87 -20.15 -0.12 -8.80 16 5 C 0.39 16.10 10.89 70.17 0.76 16.86 16 6 O -0.51 -21.95 17.17 -2.97 -0.05 -22.00 16 7 C 0.00 -0.15 5.11 -19.56 -0.10 -0.25 16 8 C 0.01 0.51 3.55 29.10 0.10 0.61 16 9 C -0.52 -28.59 9.65 25.60 0.25 -28.35 16 10 H 0.03 1.76 7.98 -2.91 -0.02 1.73 16 11 C 0.01 0.72 5.47 84.66 0.46 1.18 16 12 N -0.95 -57.83 13.96 21.45 0.30 -57.54 16 13 Si 0.94 41.63 27.47 68.60 1.88 43.51 16 14 H -0.26 -11.18 7.11 99.48 0.71 -10.48 16 15 H -0.29 -12.54 7.11 99.48 0.71 -11.84 16 16 H -0.24 -9.55 6.54 99.48 0.65 -8.90 16 17 C -0.15 -5.21 9.31 22.23 0.21 -5.00 16 18 C -0.05 -1.43 5.89 -19.78 -0.12 -1.55 16 19 C -0.12 -2.20 9.18 71.24 0.65 -1.55 16 20 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 21 H 0.09 1.31 6.68 -2.39 -0.02 1.29 16 22 H 0.07 1.27 8.08 -2.38 -0.02 1.25 16 23 H 0.13 4.18 7.65 -2.91 -0.02 4.16 16 24 H 0.11 4.47 6.47 -2.91 -0.02 4.45 16 25 H 0.04 1.83 7.11 -2.39 -0.02 1.82 16 26 H 0.04 1.64 6.04 -2.39 -0.01 1.62 16 27 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 28 H 0.13 4.27 8.06 -2.91 -0.02 4.25 16 29 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.07 1.36 8.08 -2.39 -0.02 1.34 16 31 H 0.09 1.35 6.68 -2.38 -0.02 1.34 16 Total: -1.00 -66.82 265.99 6.05 -60.77 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: 1.07 Total: 9.27 kcal Atomic # 6 Polarization: -36.87 SS G_CDS: 2.85 Total: -34.02 kcal Atomic # 7 Polarization: -57.83 SS G_CDS: 0.30 Total: -57.54 kcal Atomic # 8 Polarization: -21.95 SS G_CDS: -0.05 Total: -22.00 kcal Atomic # 14 Polarization: 41.63 SS G_CDS: 1.88 Total: 43.51 kcal Total: -66.82 6.05 -60.77 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238474809.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.261 kcal (2) G-P(sol) polarization free energy of solvation -66.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds