Wall clock time and date at job start Mon Mar 30 2020 02:42:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86793 * 120.00011 * 2 1 4 4 H 1.48501 * 109.47153 * 269.99753 * 3 2 1 5 5 H 1.48502 * 109.47445 * 29.99466 * 3 2 1 6 6 H 1.48501 * 109.47149 * 149.99815 * 3 2 1 7 7 C 1.37877 * 119.99606 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00495 * 0.02562 * 7 2 1 9 9 C 1.50703 * 119.99715 * 180.02562 * 7 2 1 10 10 C 1.52996 * 109.47175 * 180.02562 * 9 7 2 11 11 H 1.08995 * 109.46790 * 304.99867 * 10 9 7 12 12 C 1.52997 * 109.47255 * 64.99938 * 10 9 7 13 13 C 1.50700 * 109.47098 * 185.00049 * 12 10 9 14 14 O 1.20760 * 120.00024 * 125.00284 * 13 12 10 15 15 C 1.50706 * 109.47030 * 185.00258 * 10 9 7 16 16 C 1.38234 * 120.00196 * 120.00088 * 15 10 9 17 17 C 1.38235 * 119.99814 * 179.97438 * 16 15 10 18 18 C 1.38230 * 120.00326 * 359.97438 * 17 16 15 19 19 C 1.38243 * 120.00092 * 359.97438 * 18 17 16 20 20 C 1.38234 * 119.99618 * 359.97438 * 19 18 17 21 21 H 0.97006 * 120.00273 * 0.02562 * 1 2 3 22 22 H 1.08998 * 109.46904 * 59.99897 * 9 7 2 23 23 H 1.09007 * 109.46937 * 300.00304 * 9 7 2 24 24 H 1.08996 * 109.47075 * 305.00216 * 12 10 9 25 25 H 1.09004 * 109.47144 * 65.00327 * 12 10 9 26 26 H 1.08001 * 120.00027 * 304.99935 * 13 12 10 27 27 H 1.08000 * 119.99516 * 0.24808 * 16 15 10 28 28 H 1.08000 * 119.99297 * 179.97438 * 17 16 15 29 29 H 1.08001 * 120.00350 * 179.97438 * 18 17 16 30 30 H 1.07999 * 120.00235 * 179.97438 * 19 18 17 31 31 H 1.08005 * 119.99804 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4401 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.0214 -2.6366 0.0010 11 1 3.5865 -3.1757 0.8425 12 6 3.6172 -3.3204 -1.3066 13 6 4.0113 -4.7740 -1.2560 14 8 3.1829 -5.6313 -1.4489 15 6 5.5233 -2.6384 0.1255 16 6 6.1273 -3.2679 1.1978 17 6 7.5049 -3.2700 1.3116 18 6 8.2787 -2.6431 0.3529 19 6 7.6748 -2.0144 -0.7200 20 6 6.2972 -2.0132 -0.8344 21 1 -0.4851 0.8401 -0.0004 22 1 3.8744 -0.6801 0.8911 23 1 3.8751 -0.6804 -0.8889 24 1 2.5383 -3.2408 -1.4398 25 1 4.1231 -2.8356 -2.1416 26 1 5.0346 -5.0492 -1.0473 27 1 5.5229 -3.7619 1.9442 28 1 7.9767 -3.7615 2.1496 29 1 9.3550 -2.6443 0.4421 30 1 8.2793 -1.5242 -1.4688 31 1 5.8253 -1.5217 -1.6724 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238621092.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:22 Heat of formation + Delta-G solvation = -27.695399 kcal Electronic energy + Delta-G solvation = -14133.604302 eV Core-core repulsion = 11765.505958 eV Total energy + Delta-G solvation = -2368.098344 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.49207 -38.41605 -35.26384 -32.41658 -30.70836 -29.63913 -28.54394 -24.58154 -22.53521 -21.76135 -21.07249 -19.28206 -17.14489 -16.33386 -16.00307 -14.96900 -14.91648 -14.34380 -14.20272 -13.77067 -13.33791 -13.08817 -12.68932 -12.49165 -12.24422 -11.56998 -11.56218 -11.08198 -10.90594 -10.68220 -10.17385 -10.01996 -9.76722 -9.25008 -9.15281 -8.72023 -8.57947 -8.32374 -6.08046 -4.07120 1.58964 1.60050 2.34395 3.27217 3.35837 3.39079 4.01156 4.41133 4.73500 5.04543 5.08763 5.17451 5.25705 5.33799 5.54849 5.66859 5.76254 5.77760 5.84872 6.18217 6.22962 6.38368 6.61512 6.63388 6.68055 6.79651 6.92883 7.15374 7.22531 7.30363 7.71521 7.75252 8.47215 8.96305 9.53447 11.04908 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.023606 B = 0.009793 C = 0.007586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.855488 B = 2858.492012 C = 3690.174034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.069 3.931 3 Si 0.876 3.124 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.523 4.523 8 H 0.076 0.924 9 C -0.001 4.001 10 C -0.030 4.030 11 H 0.076 0.924 12 C -0.175 4.175 13 C 0.346 3.654 14 O -0.473 6.473 15 C -0.066 4.066 16 C -0.123 4.123 17 C -0.121 4.121 18 C -0.136 4.136 19 C -0.121 4.121 20 C -0.115 4.115 21 H 0.263 0.737 22 H 0.021 0.979 23 H 0.016 0.984 24 H 0.107 0.893 25 H 0.091 0.909 26 H 0.081 0.919 27 H 0.120 0.880 28 H 0.116 0.884 29 H 0.114 0.886 30 H 0.117 0.883 31 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.489 -4.219 -0.417 16.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.133 4.133 3 Si 0.703 3.297 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.189 1.189 7 C -0.561 4.561 8 H 0.094 0.906 9 C -0.038 4.038 10 C -0.049 4.049 11 H 0.094 0.906 12 C -0.212 4.212 13 C 0.203 3.797 14 O -0.345 6.345 15 C -0.066 4.066 16 C -0.141 4.141 17 C -0.139 4.139 18 C -0.154 4.154 19 C -0.139 4.139 20 C -0.133 4.133 21 H 0.073 0.927 22 H 0.039 0.961 23 H 0.034 0.966 24 H 0.125 0.875 25 H 0.109 0.891 26 H 0.098 0.902 27 H 0.138 0.862 28 H 0.134 0.866 29 H 0.133 0.867 30 H 0.135 0.865 31 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 14.870 -4.564 -0.519 15.564 hybrid contribution 0.503 1.165 0.069 1.271 sum 15.373 -3.400 -0.450 15.751 Atomic orbital electron populations 1.69913 1.06285 1.26923 1.50739 1.25002 0.94686 0.99072 0.94513 0.86837 0.80464 0.83834 0.78542 1.20273 1.21383 1.18934 1.21119 0.89145 0.94587 1.51210 0.90641 1.19614 0.97226 0.90131 0.96845 1.20059 0.88430 0.99968 0.96422 0.90555 1.22514 1.05701 0.93735 0.99269 1.26212 0.92884 0.91253 0.69369 1.90357 1.55288 1.53663 1.35242 1.20314 0.96618 0.95609 0.94033 1.21144 0.94609 1.00218 0.98126 1.21078 0.93946 0.99978 0.98902 1.21037 0.99343 0.99622 0.95387 1.21111 0.94848 0.99735 0.98190 1.21104 0.93409 0.99335 0.99482 0.92680 0.96051 0.96565 0.87493 0.89083 0.90239 0.86181 0.86570 0.86748 0.86523 0.85852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.29 13.96 55.43 0.77 -26.52 16 2 C 0.07 1.95 5.47 -17.82 -0.10 1.86 16 3 Si 0.88 21.20 27.47 -169.99 -4.67 16.53 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.26 -6.18 6.54 56.52 0.37 -5.81 16 7 C -0.52 -14.18 8.89 -34.44 -0.31 -14.48 16 8 H 0.08 2.21 7.32 -52.49 -0.38 1.83 16 9 C 0.00 -0.02 3.26 -27.88 -0.09 -0.11 16 10 C -0.03 -0.55 1.98 -91.77 -0.18 -0.73 16 11 H 0.08 1.43 7.88 -51.93 -0.41 1.02 16 12 C -0.17 -2.99 5.05 -27.88 -0.14 -3.13 16 13 C 0.35 5.46 10.76 36.01 0.39 5.85 16 14 O -0.47 -9.19 17.90 6.00 0.11 -9.09 16 15 C -0.07 -1.02 4.02 -104.62 -0.42 -1.44 16 16 C -0.12 -1.71 9.67 -39.58 -0.38 -2.09 16 17 C -0.12 -1.47 10.05 -39.59 -0.40 -1.87 16 18 C -0.14 -1.59 10.05 -39.58 -0.40 -1.99 16 19 C -0.12 -1.50 10.05 -39.58 -0.40 -1.90 16 20 C -0.12 -1.65 8.71 -39.58 -0.34 -2.00 16 21 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 22 H 0.02 0.49 7.20 -51.93 -0.37 0.12 16 23 H 0.02 0.35 7.00 -51.92 -0.36 -0.01 16 24 H 0.11 2.17 6.80 -51.93 -0.35 1.82 16 25 H 0.09 1.39 7.22 -51.93 -0.37 1.02 16 26 H 0.08 1.03 7.77 -52.49 -0.41 0.63 16 27 H 0.12 1.55 7.95 -52.49 -0.42 1.13 16 28 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 29 H 0.11 1.06 8.06 -52.49 -0.42 0.64 16 30 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 31 H 0.12 1.71 7.13 -52.48 -0.37 1.34 16 LS Contribution 266.77 15.07 4.02 4.02 Total: -1.00 -31.04 266.77 -6.43 -37.47 By element: Atomic # 1 Polarization: 3.50 SS G_CDS: -3.89 Total: -0.39 kcal Atomic # 6 Polarization: -19.26 SS G_CDS: -2.77 Total: -22.03 kcal Atomic # 7 Polarization: -27.29 SS G_CDS: 0.77 Total: -26.52 kcal Atomic # 8 Polarization: -9.19 SS G_CDS: 0.11 Total: -9.09 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -4.67 Total: 16.53 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -31.04 -6.43 -37.47 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238621092.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.778 kcal (2) G-P(sol) polarization free energy of solvation -31.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds