Wall clock time and date at job start Mon Mar 30 2020 02:42:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86793 * 120.00011 * 2 1 4 4 H 1.48501 * 109.47153 * 269.99753 * 3 2 1 5 5 H 1.48502 * 109.47445 * 29.99466 * 3 2 1 6 6 H 1.48501 * 109.47149 * 149.99815 * 3 2 1 7 7 C 1.37877 * 119.99606 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00495 * 0.02562 * 7 2 1 9 9 C 1.50703 * 119.99715 * 180.02562 * 7 2 1 10 10 C 1.52996 * 109.47175 * 180.02562 * 9 7 2 11 11 H 1.08995 * 109.46790 * 304.99867 * 10 9 7 12 12 C 1.52997 * 109.47255 * 64.99938 * 10 9 7 13 13 C 1.50700 * 109.47098 * 185.00049 * 12 10 9 14 14 O 1.20760 * 120.00024 * 125.00284 * 13 12 10 15 15 C 1.50706 * 109.47030 * 185.00258 * 10 9 7 16 16 C 1.38234 * 120.00196 * 120.00088 * 15 10 9 17 17 C 1.38235 * 119.99814 * 179.97438 * 16 15 10 18 18 C 1.38230 * 120.00326 * 359.97438 * 17 16 15 19 19 C 1.38243 * 120.00092 * 359.97438 * 18 17 16 20 20 C 1.38234 * 119.99618 * 359.97438 * 19 18 17 21 21 H 0.97006 * 120.00273 * 0.02562 * 1 2 3 22 22 H 1.08998 * 109.46904 * 59.99897 * 9 7 2 23 23 H 1.09007 * 109.46937 * 300.00304 * 9 7 2 24 24 H 1.08996 * 109.47075 * 305.00216 * 12 10 9 25 25 H 1.09004 * 109.47144 * 65.00327 * 12 10 9 26 26 H 1.08001 * 120.00027 * 304.99935 * 13 12 10 27 27 H 1.08000 * 119.99516 * 0.24808 * 16 15 10 28 28 H 1.08000 * 119.99297 * 179.97438 * 17 16 15 29 29 H 1.08001 * 120.00350 * 179.97438 * 18 17 16 30 30 H 1.07999 * 120.00235 * 179.97438 * 19 18 17 31 31 H 1.08005 * 119.99804 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4401 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.0214 -2.6366 0.0010 11 1 3.5865 -3.1757 0.8425 12 6 3.6172 -3.3204 -1.3066 13 6 4.0113 -4.7740 -1.2560 14 8 3.1829 -5.6313 -1.4489 15 6 5.5233 -2.6384 0.1255 16 6 6.1273 -3.2679 1.1978 17 6 7.5049 -3.2700 1.3116 18 6 8.2787 -2.6431 0.3529 19 6 7.6748 -2.0144 -0.7200 20 6 6.2972 -2.0132 -0.8344 21 1 -0.4851 0.8401 -0.0004 22 1 3.8744 -0.6801 0.8911 23 1 3.8751 -0.6804 -0.8889 24 1 2.5383 -3.2408 -1.4398 25 1 4.1231 -2.8356 -2.1416 26 1 5.0346 -5.0492 -1.0473 27 1 5.5229 -3.7619 1.9442 28 1 7.9767 -3.7615 2.1496 29 1 9.3550 -2.6443 0.4421 30 1 8.2793 -1.5242 -1.4688 31 1 5.8253 -1.5217 -1.6724 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238621092.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:22 Heat of formation + Delta-G solvation = -45.973292 kcal Electronic energy + Delta-G solvation = -14134.396891 eV Core-core repulsion = 11765.505958 eV Total energy + Delta-G solvation = -2368.890933 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.70312 -39.70010 -36.73929 -34.44186 -31.67902 -30.92559 -30.22692 -26.22160 -23.66410 -23.01333 -22.56266 -20.63528 -19.06001 -17.56196 -17.29347 -16.53328 -16.15574 -15.87189 -15.54550 -15.15629 -14.81225 -14.39910 -14.04466 -14.00079 -13.64853 -13.27997 -12.91930 -12.64542 -12.29103 -12.03925 -11.85620 -11.65724 -11.42661 -11.12871 -10.74868 -10.57705 -9.68945 -9.43052 -8.27377 -6.31101 0.57460 0.62953 1.02670 1.35620 1.38200 1.49587 2.36512 3.01216 3.07766 3.45971 3.85925 3.99260 4.23645 4.29147 4.39277 4.42853 4.44515 4.73830 4.77164 4.90755 4.97611 5.22178 5.26146 5.29742 5.35566 5.47172 5.62861 5.74097 5.76103 5.92605 6.25559 6.29074 6.44069 6.76973 7.32953 8.89339 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.023606 B = 0.009793 C = 0.007586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.855488 B = 2858.492012 C = 3690.174034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.004 3.996 3 Si 0.947 3.053 4 H -0.264 1.264 5 H -0.288 1.288 6 H -0.247 1.247 7 C -0.524 4.524 8 H 0.033 0.967 9 C 0.004 3.996 10 C -0.020 4.020 11 H 0.059 0.941 12 C -0.173 4.173 13 C 0.364 3.636 14 O -0.513 6.513 15 C -0.084 4.084 16 C -0.134 4.134 17 C -0.120 4.120 18 C -0.130 4.130 19 C -0.120 4.120 20 C -0.127 4.127 21 H 0.265 0.735 22 H 0.017 0.983 23 H 0.027 0.973 24 H 0.062 0.938 25 H 0.113 0.887 26 H 0.128 0.872 27 H 0.122 0.878 28 H 0.142 0.858 29 H 0.145 0.855 30 H 0.142 0.858 31 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.424 -3.646 -0.407 19.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.193 4.193 3 Si 0.770 3.230 4 H -0.189 1.189 5 H -0.214 1.214 6 H -0.170 1.170 7 C -0.562 4.562 8 H 0.051 0.949 9 C -0.033 4.033 10 C -0.039 4.039 11 H 0.078 0.922 12 C -0.211 4.211 13 C 0.224 3.776 14 O -0.387 6.387 15 C -0.084 4.084 16 C -0.152 4.152 17 C -0.138 4.138 18 C -0.147 4.147 19 C -0.138 4.138 20 C -0.145 4.145 21 H 0.074 0.926 22 H 0.036 0.964 23 H 0.046 0.954 24 H 0.081 0.919 25 H 0.131 0.869 26 H 0.144 0.856 27 H 0.140 0.860 28 H 0.160 0.840 29 H 0.163 0.837 30 H 0.160 0.840 31 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 18.833 -4.000 -0.508 19.260 hybrid contribution -0.690 0.919 0.088 1.153 sum 18.143 -3.081 -0.420 18.408 Atomic orbital electron populations 1.70082 1.08377 1.28013 1.52899 1.25990 0.95513 1.03436 0.94357 0.85705 0.79492 0.78470 0.79283 1.18909 1.21414 1.17005 1.21458 0.91960 0.92949 1.49868 0.94868 1.19514 0.93632 0.93283 0.96870 1.19771 0.91031 0.97018 0.96065 0.92227 1.22448 1.03102 0.95639 0.99905 1.26474 0.94039 0.89691 0.67424 1.90359 1.56787 1.54267 1.37315 1.19982 0.94299 0.98227 0.95848 1.21263 0.95805 1.00382 0.97713 1.21389 0.93068 0.99567 0.99768 1.21455 1.00969 0.97935 0.94373 1.21414 0.94094 0.99356 0.98961 1.21194 0.94479 0.99577 0.99275 0.92643 0.96433 0.95423 0.91902 0.86918 0.85629 0.86037 0.84029 0.83705 0.84041 0.85940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.08 13.96 21.45 0.30 -59.78 16 2 C 0.00 0.21 5.47 84.65 0.46 0.67 16 3 Si 0.95 43.83 27.47 68.60 1.88 45.71 16 4 H -0.26 -11.62 7.11 99.48 0.71 -10.92 16 5 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 6 H -0.25 -10.59 6.54 99.48 0.65 -9.94 16 7 C -0.52 -29.59 8.89 25.60 0.23 -29.36 16 8 H 0.03 2.09 7.32 -2.91 -0.02 2.07 16 9 C 0.00 0.19 3.26 29.85 0.10 0.29 16 10 C -0.02 -0.73 1.98 -11.54 -0.02 -0.75 16 11 H 0.06 2.31 7.88 -2.39 -0.02 2.29 16 12 C -0.17 -6.02 5.05 29.85 0.15 -5.87 16 13 C 0.36 11.26 10.76 71.24 0.77 12.03 16 14 O -0.51 -20.13 17.90 -1.45 -0.03 -20.16 16 15 C -0.08 -2.42 4.02 -19.86 -0.08 -2.50 16 16 C -0.13 -3.38 9.67 22.27 0.22 -3.16 16 17 C -0.12 -2.42 10.05 22.27 0.22 -2.20 16 18 C -0.13 -2.39 10.05 22.27 0.22 -2.17 16 19 C -0.12 -2.46 10.05 22.27 0.22 -2.24 16 20 C -0.13 -3.26 8.71 22.27 0.19 -3.07 16 21 H 0.26 15.61 8.31 -92.70 -0.77 14.84 16 22 H 0.02 0.79 7.20 -2.39 -0.02 0.77 16 23 H 0.03 1.17 7.00 -2.38 -0.02 1.15 16 24 H 0.06 2.73 6.80 -2.39 -0.02 2.72 16 25 H 0.11 3.37 7.22 -2.38 -0.02 3.35 16 26 H 0.13 2.88 7.77 -2.91 -0.02 2.86 16 27 H 0.12 2.94 7.95 -2.91 -0.02 2.92 16 28 H 0.14 2.11 8.06 -2.91 -0.02 2.09 16 29 H 0.15 1.81 8.06 -2.91 -0.02 1.79 16 30 H 0.14 2.16 8.06 -2.91 -0.02 2.14 16 31 H 0.12 3.08 7.13 -2.91 -0.02 3.06 16 Total: -1.00 -69.83 266.77 5.89 -63.94 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: 1.05 Total: 8.62 kcal Atomic # 6 Polarization: -41.01 SS G_CDS: 2.68 Total: -38.33 kcal Atomic # 7 Polarization: -60.08 SS G_CDS: 0.30 Total: -59.78 kcal Atomic # 8 Polarization: -20.13 SS G_CDS: -0.03 Total: -20.16 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 1.88 Total: 45.71 kcal Total: -69.83 5.89 -63.94 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238621092.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.966 kcal (2) G-P(sol) polarization free energy of solvation -69.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds