Wall clock time and date at job start Mon Mar 30 2020 03:18:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50705 * 119.99792 * 2 1 4 4 C 1.50695 * 109.46948 * 125.00547 * 3 2 1 5 5 C 1.38166 * 120.03164 * 100.31813 * 4 3 2 6 6 C 1.38250 * 120.05415 * 180.24713 * 5 4 3 7 7 C 1.50700 * 119.94114 * 179.72726 * 6 5 4 8 8 C 1.50702 * 109.46869 * 269.72405 * 7 6 5 9 9 H 1.08002 * 120.00299 * 0.02562 * 8 7 6 10 10 C 1.37884 * 119.99942 * 179.72213 * 8 7 6 11 11 N 1.31514 * 119.99698 * 0.28408 * 10 8 7 12 12 Si 1.86794 * 119.99837 * 180.27476 * 10 8 7 13 13 H 1.48504 * 109.47196 * 60.00645 * 12 10 8 14 14 H 1.48504 * 109.46887 * 180.02562 * 12 10 8 15 15 H 1.48502 * 109.47679 * 300.00280 * 12 10 8 16 16 C 1.38282 * 120.11435 * 359.45086 * 6 5 4 17 17 C 1.38126 * 120.05162 * 0.25013 * 16 6 5 18 18 C 1.38714 * 120.02694 * 279.99264 * 4 3 2 19 19 O 1.35897 * 120.05516 * 0.02562 * 18 4 3 20 20 H 1.08001 * 120.00030 * 359.97438 * 1 2 3 21 21 H 1.08003 * 119.99850 * 180.02562 * 1 2 3 22 22 H 1.08000 * 120.00542 * 180.02562 * 2 1 3 23 23 H 1.08991 * 109.47212 * 4.99859 * 3 2 1 24 24 H 1.09006 * 109.46787 * 244.99799 * 3 2 1 25 25 H 1.08001 * 119.97568 * 359.97438 * 5 4 3 26 26 H 1.09004 * 109.47210 * 149.72698 * 7 6 5 27 27 H 1.08994 * 109.47551 * 29.72350 * 7 6 5 28 28 H 0.97005 * 119.99651 * 179.97438 * 11 10 8 29 29 H 1.08000 * 119.97271 * 180.27446 * 16 6 5 30 30 H 1.08000 * 120.02070 * 179.97438 * 17 16 6 31 31 H 0.96699 * 114.00033 * 270.02008 * 19 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 3.0204 1.3327 1.1638 5 6 4.3599 1.0588 0.9642 6 6 5.2374 1.0789 2.0323 7 6 6.6967 0.7737 1.8128 8 6 6.9312 -0.7055 1.9801 9 1 6.1060 -1.3593 2.2209 10 6 8.1983 -1.2252 1.8196 11 7 9.2031 -0.4291 1.5260 12 14 8.4875 -3.0597 2.0194 13 1 7.6676 -3.8011 1.0277 14 1 9.9248 -3.3612 1.7983 15 1 8.1005 -3.4755 3.3915 16 6 4.7793 1.3841 3.3009 17 6 3.4422 1.6647 3.5046 18 6 2.5585 1.6396 2.4352 19 8 1.2426 1.9154 2.6331 20 1 -0.5400 0.9353 0.0004 21 1 -0.5400 -0.9353 0.0004 22 1 1.8501 -0.9353 -0.0004 23 1 1.3586 2.1316 0.0895 24 1 2.6213 1.4026 -0.9314 25 1 4.7210 0.8245 -0.0263 26 1 7.2959 1.3211 2.5404 27 1 6.9835 1.0753 0.8054 28 1 10.0946 -0.7946 1.4135 29 1 5.4675 1.4034 4.1329 30 1 3.0849 1.9026 4.4956 31 1 1.0186 2.8515 2.5403 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238715626.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:28 Heat of formation + Delta-G solvation = -37.173923 kcal Electronic energy + Delta-G solvation = -13899.039628 eV Core-core repulsion = 11530.530264 eV Total energy + Delta-G solvation = -2368.509364 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.83428 -37.80894 -36.12311 -35.10224 -32.36580 -32.06252 -28.58141 -27.16343 -25.10411 -23.15104 -21.68834 -20.48430 -19.14548 -18.52175 -16.93302 -16.83325 -16.32143 -15.95248 -15.46017 -14.68333 -14.50953 -14.33438 -13.99835 -13.53864 -13.47772 -13.06565 -12.84521 -12.64295 -12.40820 -12.24145 -12.00298 -11.52105 -11.38842 -11.30470 -10.61939 -10.17043 -9.66034 -9.17038 -8.21680 -6.35324 0.44727 0.49490 1.38200 1.40565 1.48888 1.50114 2.37737 2.84403 3.08645 3.41329 3.95360 4.02194 4.19054 4.24803 4.37548 4.55318 4.64520 4.80993 4.87122 5.05808 5.12423 5.14266 5.32621 5.36893 5.51079 5.59941 5.72626 5.79688 5.93624 6.03348 6.04761 6.18587 6.76879 6.98062 7.33191 8.87067 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.033333 B = 0.007111 C = 0.006477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.816333 B = 3936.766255 C = 4322.072955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.162 4.162 3 C -0.040 4.040 4 C -0.105 4.105 5 C -0.118 4.118 6 C -0.070 4.070 7 C 0.058 3.942 8 C -0.531 4.531 9 H 0.052 0.948 10 C 0.007 3.993 11 N -0.929 5.929 12 Si 0.963 3.037 13 H -0.269 1.269 14 H -0.278 1.278 15 H -0.268 1.268 16 C -0.124 4.124 17 C -0.141 4.141 18 C 0.090 3.910 19 O -0.494 6.494 20 H 0.111 0.889 21 H 0.103 0.897 22 H 0.090 0.910 23 H 0.095 0.905 24 H 0.081 0.919 25 H 0.116 0.884 26 H 0.005 0.995 27 H 0.005 0.995 28 H 0.266 0.734 29 H 0.119 0.881 30 H 0.145 0.855 31 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.609 4.716 -0.721 16.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.180 4.180 3 C -0.077 4.077 4 C -0.105 4.105 5 C -0.136 4.136 6 C -0.070 4.070 7 C 0.021 3.979 8 C -0.569 4.569 9 H 0.070 0.930 10 C -0.192 4.192 11 N -0.568 5.568 12 Si 0.787 3.213 13 H -0.194 1.194 14 H -0.203 1.203 15 H -0.193 1.193 16 C -0.142 4.142 17 C -0.159 4.159 18 C 0.045 3.955 19 O -0.306 6.306 20 H 0.129 0.871 21 H 0.121 0.879 22 H 0.108 0.892 23 H 0.113 0.887 24 H 0.100 0.900 25 H 0.134 0.866 26 H 0.024 0.976 27 H 0.023 0.977 28 H 0.075 0.925 29 H 0.137 0.863 30 H 0.163 0.837 31 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -15.477 4.129 -0.665 16.032 hybrid contribution 0.934 -0.452 0.054 1.039 sum -14.543 3.677 -0.611 15.013 Atomic orbital electron populations 1.23915 0.95086 1.02672 0.99717 1.22777 0.96530 0.97588 1.01132 1.19595 0.96489 0.96576 0.95015 1.20222 0.93602 1.01458 0.95264 1.20903 0.92632 1.01280 0.98782 1.20416 0.97096 0.95503 0.93952 1.18087 0.88240 0.95788 0.95822 1.21344 0.94044 0.93237 1.48282 0.93017 1.25899 0.95725 1.02989 0.94576 1.70066 1.00709 1.37140 1.48925 0.85531 0.77313 0.79339 0.79087 1.19374 1.20311 1.19344 1.20995 0.95849 1.00840 0.96507 1.21512 0.92342 1.02194 0.99880 1.18122 0.83712 1.02301 0.91356 1.84794 1.20271 1.32413 1.93148 0.87079 0.87904 0.89153 0.88712 0.90021 0.86632 0.97641 0.97710 0.92486 0.86320 0.83689 0.74030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.75 14.32 67.78 0.97 -2.78 16 2 C -0.16 -4.20 9.49 25.65 0.24 -3.96 16 3 C -0.04 -1.02 5.45 29.10 0.16 -0.86 16 4 C -0.10 -3.41 5.13 -19.77 -0.10 -3.51 16 5 C -0.12 -4.66 9.32 22.26 0.21 -4.46 16 6 C -0.07 -3.12 5.07 -19.85 -0.10 -3.22 16 7 C 0.06 3.12 5.10 29.10 0.15 3.26 16 8 C -0.53 -30.82 9.09 25.60 0.23 -30.59 16 9 H 0.05 2.98 7.74 -2.91 -0.02 2.95 16 10 C 0.01 0.37 5.46 84.66 0.46 0.84 16 11 N -0.93 -56.22 13.29 21.45 0.28 -55.93 16 12 Si 0.96 44.73 29.54 68.60 2.03 46.75 16 13 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 14 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 15 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 16 C -0.12 -4.88 9.69 22.25 0.22 -4.67 16 17 C -0.14 -4.58 9.99 22.37 0.22 -4.36 16 18 C 0.09 2.74 6.67 22.51 0.15 2.89 16 19 O -0.49 -11.83 12.74 -92.39 -1.18 -13.01 16 20 H 0.11 1.95 7.84 -2.91 -0.02 1.93 16 21 H 0.10 1.95 8.06 -2.91 -0.02 1.93 16 22 H 0.09 2.61 8.06 -2.91 -0.02 2.59 16 23 H 0.09 1.93 7.51 -2.39 -0.02 1.91 16 24 H 0.08 1.99 8.00 -2.38 -0.02 1.97 16 25 H 0.12 4.57 8.03 -2.91 -0.02 4.54 16 26 H 0.01 0.30 8.08 -2.38 -0.02 0.28 16 27 H 0.00 0.26 8.08 -2.39 -0.02 0.24 16 28 H 0.27 15.11 8.31 -92.70 -0.77 14.34 16 29 H 0.12 4.61 8.06 -2.91 -0.02 4.58 16 30 H 0.15 3.85 8.06 -2.91 -0.02 3.82 16 31 H 0.40 5.42 9.06 -74.06 -0.67 4.75 16 Total: -1.00 -66.61 276.57 4.39 -62.22 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: 0.44 Total: 11.36 kcal Atomic # 6 Polarization: -54.21 SS G_CDS: 2.81 Total: -51.40 kcal Atomic # 7 Polarization: -56.22 SS G_CDS: 0.28 Total: -55.93 kcal Atomic # 8 Polarization: -11.83 SS G_CDS: -1.18 Total: -13.01 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.75 kcal Total: -66.61 4.39 -62.22 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238715626.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.049 kcal (2) G-P(sol) polarization free energy of solvation -66.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds