Wall clock time and date at job start Mon Mar 30 2020 02:36:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 119.99974 * 2 1 4 4 H 1.48500 * 109.47246 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.47047 * 299.99833 * 3 2 1 6 6 H 1.48498 * 109.47428 * 60.00001 * 3 2 1 7 7 C 1.37876 * 119.99729 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99587 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00302 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47116 * 179.97438 * 9 7 2 11 11 C 1.50706 * 113.00106 * 294.82984 * 10 9 7 12 12 C 1.38240 * 119.99607 * 282.61619 * 11 10 9 13 13 C 1.38233 * 119.99630 * 179.97438 * 12 11 10 14 14 C 1.38240 * 120.00270 * 0.27547 * 13 12 11 15 15 C 1.38246 * 119.99674 * 359.53352 * 14 13 12 16 16 C 1.38228 * 120.00167 * 102.63375 * 11 10 9 17 17 C 1.54032 * 113.92564 * 66.76418 * 10 9 7 18 18 O 1.44174 * 85.51779 * 91.65928 * 17 10 9 19 19 C 1.44172 * 93.34202 * 24.19384 * 18 17 10 20 20 H 0.97000 * 119.99869 * 0.02562 * 1 2 3 21 21 H 1.09003 * 109.46635 * 60.00510 * 9 7 2 22 22 H 1.08990 * 109.47331 * 300.00289 * 9 7 2 23 23 H 1.07997 * 120.00206 * 359.97438 * 12 11 10 24 24 H 1.08003 * 120.00281 * 179.97438 * 13 12 11 25 25 H 1.07994 * 120.00468 * 179.72461 * 14 13 12 26 26 H 1.07988 * 119.99997 * 180.21008 * 15 14 13 27 27 H 1.08001 * 119.99847 * 0.02562 * 16 11 10 28 28 H 1.09000 * 113.86256 * 205.80715 * 17 10 9 29 29 H 1.08997 * 113.86438 * 337.50681 * 17 10 9 30 30 H 1.09006 * 113.86767 * 221.66146 * 19 18 17 31 31 H 1.08997 * 113.86562 * 89.95567 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8905 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0017 10 6 2.2453 -3.6620 0.0015 11 6 3.0697 -3.7316 -1.2582 12 6 2.5176 -4.2420 -2.4182 13 6 3.2737 -4.3054 -3.5737 14 6 4.5836 -3.8637 -3.5678 15 6 5.1344 -3.3496 -2.4087 16 6 4.3780 -3.2855 -1.2534 17 6 3.0744 -3.7753 1.2946 18 8 2.0304 -4.6579 1.7525 19 6 1.6255 -5.0104 0.4145 20 1 -0.4850 0.8401 -0.0004 21 1 0.6241 -2.5574 -0.8881 22 1 0.6247 -2.5563 0.8918 23 1 1.4957 -4.5912 -2.4217 24 1 2.8426 -4.7045 -4.4800 25 1 5.1757 -3.9173 -4.4694 26 1 6.1566 -3.0014 -2.4049 27 1 4.8095 -2.8874 -0.3469 28 1 4.0384 -4.2656 1.1588 29 1 3.1432 -2.8443 1.8573 30 1 0.5450 -5.0590 0.2790 31 1 2.1470 -5.8778 0.0100 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258545274.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:59 Heat of formation + Delta-G solvation = 3.293928 kcal Electronic energy + Delta-G solvation = -14605.024815 eV Core-core repulsion = 12238.270269 eV Total energy + Delta-G solvation = -2366.754546 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.32195 -38.07067 -33.42229 -31.83259 -30.48224 -28.80093 -26.44285 -25.91341 -22.92423 -21.98371 -21.83755 -18.25992 -16.90034 -16.20401 -15.47230 -15.19879 -15.00512 -14.37949 -14.04087 -13.87777 -12.90583 -12.58947 -12.53530 -12.12344 -11.55418 -11.39527 -11.22025 -10.90348 -10.74653 -10.62236 -10.13798 -9.88588 -9.61076 -9.09287 -8.92610 -8.44073 -8.37323 -8.05740 -6.02526 -4.03930 1.87669 1.89259 3.29893 3.37703 3.40924 4.22304 4.41378 4.46530 4.94789 5.27032 5.34833 5.38749 5.45160 5.56325 5.71864 5.77812 5.93007 6.02939 6.08553 6.31045 6.46674 6.51486 6.65481 6.73946 6.86701 6.93300 6.98064 7.17856 7.47474 7.58234 7.70523 7.94523 8.34585 9.00043 9.59556 11.08942 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.022315 B = 0.011812 C = 0.009254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.445629 B = 2369.802290 C = 3025.097476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.889 3.111 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.511 4.511 8 H 0.058 0.942 9 C 0.050 3.950 10 C -0.074 4.074 11 C -0.035 4.035 12 C -0.116 4.116 13 C -0.122 4.122 14 C -0.139 4.139 15 C -0.122 4.122 16 C -0.109 4.109 17 C 0.044 3.956 18 O -0.381 6.381 19 C 0.036 3.964 20 H 0.260 0.740 21 H 0.024 0.976 22 H 0.030 0.970 23 H 0.117 0.883 24 H 0.114 0.886 25 H 0.112 0.888 26 H 0.114 0.886 27 H 0.118 0.882 28 H 0.066 0.934 29 H 0.099 0.901 30 H 0.086 0.914 31 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.093 -8.080 -4.080 11.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.142 4.142 3 Si 0.717 3.283 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.550 4.550 8 H 0.076 0.924 9 C 0.014 3.986 10 C -0.074 4.074 11 C -0.035 4.035 12 C -0.134 4.134 13 C -0.140 4.140 14 C -0.157 4.157 15 C -0.140 4.140 16 C -0.127 4.127 17 C -0.032 4.032 18 O -0.300 6.300 19 C -0.041 4.041 20 H 0.070 0.930 21 H 0.042 0.958 22 H 0.048 0.952 23 H 0.135 0.865 24 H 0.132 0.868 25 H 0.130 0.870 26 H 0.132 0.868 27 H 0.136 0.864 28 H 0.084 0.916 29 H 0.118 0.882 30 H 0.105 0.895 31 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 6.849 -8.038 -3.814 11.228 hybrid contribution 0.469 1.152 -0.311 1.282 sum 7.318 -6.886 -4.125 10.862 Atomic orbital electron populations 1.69966 1.06014 1.26523 1.50830 1.24967 0.94787 0.99134 0.95352 0.86575 0.80175 0.83982 0.77551 1.19699 1.21086 1.21036 1.21107 0.93063 0.90372 1.50412 0.92360 1.18943 0.92281 0.89394 0.98009 1.22928 0.96557 0.97047 0.90872 1.19802 0.93589 0.94965 0.95121 1.20911 0.99449 1.00592 0.92489 1.21004 0.94493 1.00781 0.97719 1.20960 0.95713 1.01244 0.97802 1.21031 0.99540 1.00205 0.93267 1.20963 0.94104 0.99388 0.98280 1.24105 0.90661 0.93992 0.94484 1.89586 1.50241 1.64805 1.25346 1.24118 1.00661 0.96510 0.82833 0.93032 0.95781 0.95187 0.86534 0.86788 0.86976 0.86792 0.86362 0.91618 0.88234 0.89539 0.91378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.51 13.29 55.43 0.74 -25.77 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.89 21.55 29.54 -169.99 -5.02 16.53 16 4 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 7 C -0.51 -13.88 8.13 -34.44 -0.28 -14.16 16 8 H 0.06 1.54 7.11 -52.49 -0.37 1.16 16 9 C 0.05 1.27 4.39 -27.89 -0.12 1.15 16 10 C -0.07 -1.49 0.65 -154.58 -0.10 -1.59 16 11 C -0.03 -0.65 4.41 -104.62 -0.46 -1.11 16 12 C -0.12 -2.02 9.40 -39.58 -0.37 -2.39 16 13 C -0.12 -1.87 10.05 -39.58 -0.40 -2.27 16 14 C -0.14 -2.05 10.05 -39.58 -0.40 -2.45 16 15 C -0.12 -1.91 10.05 -39.58 -0.40 -2.31 16 16 C -0.11 -1.94 8.43 -39.59 -0.33 -2.27 16 17 C 0.04 0.84 7.23 37.61 0.27 1.11 16 18 O -0.38 -7.74 12.37 -35.23 -0.44 -8.18 16 19 C 0.04 0.64 8.02 37.61 0.30 0.94 16 20 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 21 H 0.02 0.64 8.14 -51.93 -0.42 0.22 16 22 H 0.03 0.82 8.08 -51.93 -0.42 0.40 16 23 H 0.12 1.89 8.04 -52.49 -0.42 1.47 16 24 H 0.11 1.44 8.06 -52.48 -0.42 1.02 16 25 H 0.11 1.34 8.06 -52.49 -0.42 0.92 16 26 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 27 H 0.12 2.02 7.04 -52.49 -0.37 1.65 16 28 H 0.07 1.09 7.39 -51.93 -0.38 0.71 16 29 H 0.10 2.01 7.71 -51.93 -0.40 1.61 16 30 H 0.09 1.49 8.10 -51.93 -0.42 1.07 16 31 H 0.07 1.07 8.09 -51.93 -0.42 0.65 16 LS Contribution 264.96 15.07 3.99 3.99 Total: -1.00 -30.14 264.96 -7.15 -37.29 By element: Atomic # 1 Polarization: 3.96 SS G_CDS: -4.04 Total: -0.07 kcal Atomic # 6 Polarization: -21.40 SS G_CDS: -2.39 Total: -23.79 kcal Atomic # 7 Polarization: -26.51 SS G_CDS: 0.74 Total: -25.77 kcal Atomic # 8 Polarization: -7.74 SS G_CDS: -0.44 Total: -8.18 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -30.14 -7.15 -37.29 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258545274.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.584 kcal (2) G-P(sol) polarization free energy of solvation -30.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.290 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds