Wall clock time and date at job start Mon Mar 30 2020 02:36:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 119.99974 * 2 1 4 4 H 1.48500 * 109.47246 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.47047 * 299.99833 * 3 2 1 6 6 H 1.48498 * 109.47428 * 60.00001 * 3 2 1 7 7 C 1.37876 * 119.99729 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99587 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00302 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47116 * 179.97438 * 9 7 2 11 11 C 1.50706 * 113.00106 * 294.82984 * 10 9 7 12 12 C 1.38240 * 119.99607 * 282.61619 * 11 10 9 13 13 C 1.38233 * 119.99630 * 179.97438 * 12 11 10 14 14 C 1.38240 * 120.00270 * 0.27547 * 13 12 11 15 15 C 1.38246 * 119.99674 * 359.53352 * 14 13 12 16 16 C 1.38228 * 120.00167 * 102.63375 * 11 10 9 17 17 C 1.54032 * 113.92564 * 66.76418 * 10 9 7 18 18 O 1.44174 * 85.51779 * 91.65928 * 17 10 9 19 19 C 1.44172 * 93.34202 * 24.19384 * 18 17 10 20 20 H 0.97000 * 119.99869 * 0.02562 * 1 2 3 21 21 H 1.09003 * 109.46635 * 60.00510 * 9 7 2 22 22 H 1.08990 * 109.47331 * 300.00289 * 9 7 2 23 23 H 1.07997 * 120.00206 * 359.97438 * 12 11 10 24 24 H 1.08003 * 120.00281 * 179.97438 * 13 12 11 25 25 H 1.07994 * 120.00468 * 179.72461 * 14 13 12 26 26 H 1.07988 * 119.99997 * 180.21008 * 15 14 13 27 27 H 1.08001 * 119.99847 * 0.02562 * 16 11 10 28 28 H 1.09000 * 113.86256 * 205.80715 * 17 10 9 29 29 H 1.08997 * 113.86438 * 337.50681 * 17 10 9 30 30 H 1.09006 * 113.86767 * 221.66146 * 19 18 17 31 31 H 1.08997 * 113.86562 * 89.95567 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8905 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0017 10 6 2.2453 -3.6620 0.0015 11 6 3.0697 -3.7316 -1.2582 12 6 2.5176 -4.2420 -2.4182 13 6 3.2737 -4.3054 -3.5737 14 6 4.5836 -3.8637 -3.5678 15 6 5.1344 -3.3496 -2.4087 16 6 4.3780 -3.2855 -1.2534 17 6 3.0744 -3.7753 1.2946 18 8 2.0304 -4.6579 1.7525 19 6 1.6255 -5.0104 0.4145 20 1 -0.4850 0.8401 -0.0004 21 1 0.6241 -2.5574 -0.8881 22 1 0.6247 -2.5563 0.8918 23 1 1.4957 -4.5912 -2.4217 24 1 2.8426 -4.7045 -4.4800 25 1 5.1757 -3.9173 -4.4694 26 1 6.1566 -3.0014 -2.4049 27 1 4.8095 -2.8874 -0.3469 28 1 4.0384 -4.2656 1.1588 29 1 3.1432 -2.8443 1.8573 30 1 0.5450 -5.0590 0.2790 31 1 2.1470 -5.8778 0.0100 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258545274.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:59 Heat of formation + Delta-G solvation = -14.434781 kcal Electronic energy + Delta-G solvation = -14605.793589 eV Core-core repulsion = 12238.270269 eV Total energy + Delta-G solvation = -2367.523321 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.82932 -39.36141 -35.38246 -33.51759 -31.71634 -30.45916 -28.16050 -27.44858 -24.87988 -23.31884 -23.11221 -19.78060 -18.58702 -17.96294 -17.07034 -16.68484 -16.45629 -16.24998 -15.36079 -15.16681 -14.44884 -14.11757 -14.07605 -13.88434 -13.18990 -13.08702 -12.79038 -12.66641 -12.43948 -12.19477 -11.74882 -11.64489 -11.19516 -11.00616 -10.58484 -10.45564 -9.67568 -9.39312 -8.18166 -6.26095 0.62080 0.64011 1.38401 1.39336 1.51299 2.40347 2.81069 3.06846 3.16884 3.44958 3.89462 4.21235 4.24031 4.28062 4.36048 4.40587 4.51799 4.73339 4.78816 4.85760 5.06193 5.21263 5.23833 5.25527 5.28184 5.44101 5.57239 5.72246 5.74340 5.80376 5.90254 6.23245 6.27198 6.86868 7.41436 8.94282 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.022315 B = 0.011812 C = 0.009254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.445629 B = 2369.802290 C = 3025.097476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.000 4.000 3 Si 0.956 3.044 4 H -0.259 1.259 5 H -0.282 1.282 6 H -0.281 1.281 7 C -0.515 4.515 8 H 0.065 0.935 9 C 0.060 3.940 10 C -0.077 4.077 11 C -0.059 4.059 12 C -0.134 4.134 13 C -0.123 4.123 14 C -0.135 4.135 15 C -0.124 4.124 16 C -0.128 4.128 17 C 0.050 3.950 18 O -0.404 6.404 19 C 0.045 3.955 20 H 0.261 0.739 21 H -0.004 1.004 22 H -0.007 1.007 23 H 0.116 0.884 24 H 0.142 0.858 25 H 0.147 0.853 26 H 0.142 0.858 27 H 0.118 0.882 28 H 0.098 0.902 29 H 0.081 0.919 30 H 0.086 0.914 31 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.343 -8.402 -5.465 13.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.197 4.197 3 Si 0.781 3.219 4 H -0.183 1.183 5 H -0.208 1.208 6 H -0.207 1.207 7 C -0.553 4.553 8 H 0.083 0.917 9 C 0.024 3.976 10 C -0.077 4.077 11 C -0.059 4.059 12 C -0.152 4.152 13 C -0.141 4.141 14 C -0.152 4.152 15 C -0.142 4.142 16 C -0.146 4.146 17 C -0.026 4.026 18 O -0.323 6.323 19 C -0.032 4.032 20 H 0.070 0.930 21 H 0.014 0.986 22 H 0.012 0.988 23 H 0.134 0.866 24 H 0.160 0.840 25 H 0.165 0.835 26 H 0.159 0.841 27 H 0.136 0.864 28 H 0.115 0.885 29 H 0.100 0.900 30 H 0.104 0.896 31 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 9.113 -8.372 -5.199 13.423 hybrid contribution -0.233 1.206 0.065 1.230 sum 8.880 -7.166 -5.133 12.512 Atomic orbital electron populations 1.70102 1.07719 1.27425 1.52315 1.25869 0.95609 1.02979 0.95230 0.85526 0.79427 0.79453 0.77484 1.18283 1.20842 1.20702 1.21459 0.93480 0.91210 1.49161 0.91698 1.18669 0.92676 0.91472 0.94825 1.22638 0.96209 0.96134 0.92765 1.19729 0.94204 0.97171 0.94801 1.21091 0.99923 1.01182 0.93045 1.21370 0.94782 1.00034 0.97883 1.21412 0.95640 0.99439 0.98750 1.21392 1.00651 0.99496 0.92685 1.21112 0.94044 1.00003 0.99406 1.24133 0.91648 0.93590 0.93219 1.89555 1.50900 1.65105 1.26737 1.24225 1.01031 0.96453 0.81476 0.93011 0.98551 0.98822 0.86556 0.84006 0.83530 0.84063 0.86427 0.88460 0.90029 0.89593 0.88271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.00 13.29 21.45 0.28 -56.71 16 2 C 0.00 0.02 5.46 84.65 0.46 0.49 16 3 Si 0.96 44.38 29.54 68.60 2.03 46.40 16 4 H -0.26 -11.35 7.11 99.48 0.71 -10.65 16 5 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 6 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 7 C -0.52 -28.46 8.13 25.60 0.21 -28.25 16 8 H 0.06 3.43 7.11 -2.91 -0.02 3.41 16 9 C 0.06 3.17 4.39 29.85 0.13 3.30 16 10 C -0.08 -3.15 0.65 -52.23 -0.03 -3.18 16 11 C -0.06 -2.17 4.41 -19.86 -0.09 -2.26 16 12 C -0.13 -4.50 9.40 22.27 0.21 -4.29 16 13 C -0.12 -3.40 10.05 22.27 0.22 -3.18 16 14 C -0.13 -3.44 10.05 22.27 0.22 -3.22 16 15 C -0.12 -3.47 10.05 22.27 0.22 -3.25 16 16 C -0.13 -4.29 8.43 22.27 0.19 -4.11 16 17 C 0.05 1.92 7.23 72.27 0.52 2.44 16 18 O -0.40 -16.44 12.37 -148.98 -1.84 -18.28 16 19 C 0.04 1.59 8.02 72.27 0.58 2.17 16 20 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 21 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 22 H -0.01 -0.38 8.08 -2.39 -0.02 -0.40 16 23 H 0.12 3.75 8.04 -2.91 -0.02 3.73 16 24 H 0.14 3.06 8.06 -2.91 -0.02 3.03 16 25 H 0.15 2.73 8.06 -2.91 -0.02 2.70 16 26 H 0.14 3.09 8.06 -2.92 -0.02 3.07 16 27 H 0.12 3.84 7.04 -2.91 -0.02 3.82 16 28 H 0.10 3.08 7.39 -2.39 -0.02 3.06 16 29 H 0.08 3.35 7.71 -2.39 -0.02 3.33 16 30 H 0.09 3.02 8.10 -2.38 -0.02 3.00 16 31 H 0.10 2.94 8.09 -2.39 -0.02 2.92 16 Total: -1.00 -65.66 264.96 4.42 -61.24 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: 1.10 Total: 10.69 kcal Atomic # 6 Polarization: -46.19 SS G_CDS: 2.85 Total: -43.34 kcal Atomic # 7 Polarization: -57.00 SS G_CDS: 0.28 Total: -56.71 kcal Atomic # 8 Polarization: -16.44 SS G_CDS: -1.84 Total: -18.28 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.40 kcal Total: -65.66 4.42 -61.24 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258545274.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.802 kcal (2) G-P(sol) polarization free energy of solvation -65.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds